Wall clock time and date at job start Wed Apr 1 2020 00:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47263 * 2 1 4 4 C 1.53005 * 109.47186 * 120.00332 * 2 1 3 5 5 C 1.52995 * 109.47186 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47228 * 299.99891 * 5 4 2 7 7 C 1.52996 * 109.46882 * 60.00077 * 6 5 4 8 8 H 1.09004 * 109.47210 * 180.02562 * 7 6 5 9 9 O 1.42899 * 109.47393 * 59.99917 * 7 6 5 10 10 C 1.42906 * 113.99530 * 89.99772 * 9 7 6 11 11 C 1.50705 * 109.46938 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99827 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00179 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00011 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46852 * 179.97438 * 14 13 11 16 16 N 1.46907 * 109.47021 * 179.97438 * 15 14 13 17 17 C 1.46895 * 110.99969 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47051 * 180.02562 * 17 16 15 19 19 O 1.21292 * 119.99931 * 0.02562 * 18 17 16 20 20 N 1.34784 * 119.99961 * 180.02562 * 18 17 16 21 21 C 1.37090 * 119.99722 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00228 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99996 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00236 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47174 * 89.99684 * 25 23 21 27 27 H 1.48504 * 109.46913 * 209.99934 * 25 23 21 28 28 H 1.48501 * 109.47062 * 329.99733 * 25 23 21 29 29 C 1.52999 * 109.47439 * 299.99867 * 7 6 5 30 30 H 1.08999 * 109.47326 * 299.99848 * 1 2 3 31 31 H 1.09000 * 109.47138 * 59.99842 * 1 2 3 32 32 H 1.09003 * 109.47246 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46765 * 59.99690 * 4 2 1 34 34 H 1.08999 * 109.46841 * 300.00117 * 4 2 1 35 35 H 1.09000 * 109.47138 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.46988 * 59.99830 * 5 4 2 37 37 H 1.08995 * 109.46816 * 300.00050 * 6 5 4 38 38 H 1.09002 * 109.46997 * 179.97438 * 6 5 4 39 39 H 1.08998 * 109.47138 * 60.00658 * 10 9 7 40 40 H 1.08990 * 109.47622 * 299.99887 * 10 9 7 41 41 H 0.97007 * 119.99960 * 359.97438 * 13 11 10 42 42 H 1.08990 * 109.47256 * 59.99550 * 14 13 11 43 43 H 1.08996 * 109.46789 * 299.99007 * 14 13 11 44 44 H 1.09003 * 109.47314 * 59.99610 * 15 14 13 45 45 H 1.09004 * 109.47259 * 299.99548 * 15 14 13 46 46 H 1.00902 * 110.99728 * 56.04647 * 16 15 14 47 47 H 1.09004 * 109.47210 * 60.00310 * 17 16 15 48 48 H 1.08997 * 109.47605 * 300.00670 * 17 16 15 49 49 H 0.96995 * 120.00015 * 359.72695 * 20 18 17 50 50 H 0.97001 * 119.99781 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.47450 * 180.02562 * 29 7 6 52 52 H 1.09003 * 109.46928 * 300.00442 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 6 3.5695 -0.7222 -1.2495 8 1 3.9320 -1.2365 -2.1396 9 8 4.0462 0.6249 -1.2498 10 6 5.3059 0.7955 -1.9028 11 6 5.7097 2.2462 -1.8441 12 8 4.9900 3.0543 -1.2966 13 7 6.8707 2.6456 -2.4001 14 6 7.2635 4.0557 -2.3426 15 6 8.6120 4.2384 -3.0418 16 7 9.0057 5.6525 -2.9847 17 6 10.2992 5.8661 -3.6473 18 6 10.6694 7.3248 -3.5681 19 8 9.9288 8.1092 -3.0138 20 7 11.8235 7.7577 -4.1133 21 6 12.1600 9.0847 -4.0417 22 1 11.5005 9.7832 -3.5481 23 6 13.3501 9.5310 -4.6033 24 7 13.6729 10.8030 -4.5343 25 14 14.4911 8.3228 -5.4565 26 1 14.1337 8.2359 -6.8952 27 1 15.8948 8.7885 -5.3224 28 1 14.3518 6.9837 -4.8300 29 6 2.0395 -0.7216 -1.2493 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6766 -1.7489 1.2491 34 1 1.6766 -0.2075 2.1392 35 1 3.9333 -1.2354 2.1391 36 1 3.9336 0.3057 1.2487 37 1 3.7157 -2.4710 -0.0002 38 1 5.1695 -1.4435 -0.0008 39 1 5.2204 0.4844 -2.9440 40 1 6.0597 0.1876 -1.4027 41 1 7.4465 1.9991 -2.8377 42 1 7.3494 4.3668 -1.3015 43 1 6.5095 4.6636 -2.8425 44 1 8.5266 3.9271 -4.0830 45 1 9.3660 3.6305 -2.5416 46 1 9.0291 5.9831 -2.0316 47 1 10.2260 5.5657 -4.6926 48 1 11.0647 5.2698 -3.1508 49 1 12.4177 7.1297 -4.5532 50 1 14.5035 11.1146 -4.9267 51 1 1.6761 -0.2081 -2.1395 52 1 1.6758 -1.7492 -1.2491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134619670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:15 Heat of formation + Delta-G solvation = -134.163695 kcal Electronic energy + Delta-G solvation = -28700.441706 eV Core-core repulsion = 24506.235762 eV Total energy + Delta-G solvation = -4194.205944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29148 -39.45220 -38.52363 -36.82034 -36.23629 -34.44395 -33.82483 -32.66622 -31.68938 -30.93712 -29.92172 -27.84920 -26.79645 -25.85473 -23.68840 -22.95145 -22.22456 -21.68105 -20.88567 -19.99539 -19.42531 -18.42161 -17.58069 -16.98990 -16.59240 -16.22838 -15.96449 -15.72142 -15.69224 -15.27441 -14.94821 -14.85925 -14.44446 -14.19588 -13.98882 -13.81430 -13.44666 -13.42295 -13.12964 -13.08361 -12.79236 -12.61481 -12.52524 -12.29639 -12.23176 -12.21488 -11.91717 -11.79780 -11.60885 -11.53125 -11.27959 -11.17093 -10.91451 -10.65970 -10.61695 -10.40392 -10.04126 -9.98802 -9.89185 -9.59347 -9.32739 -8.65166 -8.26543 -8.19206 -6.32433 -3.84075 2.36594 2.43785 3.00024 3.05083 3.13335 3.52993 3.71161 4.07943 4.13592 4.25004 4.27088 4.38689 4.45563 4.64749 4.68206 4.75368 4.77875 4.78296 4.79406 4.87889 5.00679 5.03569 5.09626 5.17854 5.20272 5.28990 5.30127 5.36276 5.43238 5.49392 5.53815 5.56004 5.64505 5.72764 5.75100 5.82209 5.83529 5.89795 5.90511 5.93348 5.96140 6.11597 6.20938 6.69410 6.94648 7.19810 7.45238 7.56200 7.96560 8.12817 8.57854 8.93418 9.40500 9.80309 10.80661 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.001322 C = 0.001301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.263504 B =21169.819796 C =21517.212826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.083 0.917 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.061 0.939 9 O -0.349 6.349 10 C 0.044 3.956 11 C 0.512 3.488 12 O -0.514 6.514 13 N -0.729 5.729 14 C 0.121 3.879 15 C 0.050 3.950 16 N -0.665 5.665 17 C 0.050 3.950 18 C 0.448 3.552 19 O -0.563 6.563 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C -0.108 4.108 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.399 0.601 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.354 0.646 47 H 0.089 0.911 48 H 0.046 0.954 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.069 0.931 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.115 -32.794 5.318 37.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.101 0.899 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.178 4.178 7 C 0.029 3.971 8 H 0.079 0.921 9 O -0.267 6.267 10 C -0.036 4.036 11 C 0.297 3.703 12 O -0.388 6.388 13 N -0.384 5.384 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.234 3.766 19 O -0.445 6.445 20 N -0.229 5.229 21 C -0.435 4.435 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.146 4.146 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.233 0.767 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.174 0.826 47 H 0.107 0.893 48 H 0.064 0.936 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.484 -31.129 5.596 37.148 hybrid contribution 2.294 -1.805 -0.510 2.963 sum -17.190 -32.934 5.085 37.497 Atomic orbital electron populations 1.21837 0.95442 1.01397 1.01809 1.21074 0.95003 1.00889 0.94026 0.89865 1.21575 0.95471 1.00151 0.97776 1.21433 0.95707 1.01632 0.96657 1.22028 1.00610 0.99411 0.95786 1.22190 0.95085 0.82784 0.97011 0.92070 1.88083 1.34201 1.26940 1.77484 1.22218 0.88585 0.94354 0.98477 1.20222 0.81172 0.90094 0.78855 1.90768 1.51449 1.54595 1.41953 1.45786 1.22329 1.10669 1.59609 1.21281 0.96643 0.80771 1.01512 1.22080 0.94827 0.90190 1.00916 1.59926 1.30354 1.15407 1.24190 1.21701 0.90004 0.96180 1.00396 1.19673 0.83175 0.89178 0.84570 1.90581 1.51107 1.56233 1.46541 1.42193 1.19064 1.09562 1.52110 1.19445 1.05756 0.82857 1.35427 0.86242 1.25041 0.97202 0.96109 0.97762 1.69624 1.24461 1.13431 1.44523 0.86663 0.81378 0.80778 0.80482 1.19588 1.20181 1.19581 1.21679 0.92775 1.01041 0.99073 0.92691 0.92695 0.93021 0.92411 0.92034 0.92334 0.90926 0.91075 0.91966 0.90361 0.90482 0.76695 0.91210 0.90012 0.90411 0.94871 0.82578 0.89321 0.93607 0.79691 0.91591 0.91231 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.19 37.15 0.34 -0.58 16 2 C -0.09 -0.67 2.58 -90.62 -0.23 -0.90 16 3 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 4 C -0.11 -0.74 5.20 -26.73 -0.14 -0.87 16 5 C -0.12 -0.81 5.78 -26.73 -0.15 -0.96 16 6 C -0.14 -0.80 5.63 -26.73 -0.15 -0.95 16 7 C 0.09 0.55 2.91 -26.73 -0.08 0.48 16 8 H 0.06 0.28 7.79 -51.93 -0.40 -0.12 16 9 O -0.35 -3.25 8.17 -55.14 -0.45 -3.70 16 10 C 0.04 0.31 6.23 36.01 0.22 0.53 16 11 C 0.51 5.42 7.91 -10.99 -0.09 5.33 16 12 O -0.51 -8.12 16.50 -14.35 -0.24 -8.36 16 13 N -0.73 -6.03 5.56 -60.30 -0.33 -6.36 16 14 C 0.12 1.29 5.93 -4.04 -0.02 1.27 16 15 C 0.05 0.51 5.80 -3.82 -0.02 0.49 16 16 N -0.67 -9.83 6.13 -115.05 -0.70 -10.53 16 17 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 18 C 0.45 10.05 7.82 -10.98 -0.09 9.96 16 19 O -0.56 -15.12 15.78 5.55 0.09 -15.03 16 20 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 21 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 25 Si 0.88 19.12 27.74 -169.99 -4.72 14.40 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.30 6.51 56.52 0.37 -4.93 16 29 C -0.11 -0.68 4.94 -26.73 -0.13 -0.81 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.66 7.68 -51.93 -0.40 0.27 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 39 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 40 H 0.08 0.36 7.87 -51.93 -0.41 -0.04 16 41 H 0.40 1.89 8.47 -40.82 -0.35 1.55 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.35 5.49 8.43 -39.29 -0.33 5.16 16 47 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 50 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 418.86 15.07 6.31 6.31 Total: -1.00 -36.14 418.86 -9.39 -45.54 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -9.25 Total: 10.54 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.82 Total: 6.01 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.32 Total: -55.71 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.60 Total: -27.09 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.72 Total: 14.40 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.14 -9.39 -45.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134619670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.628 kcal (2) G-P(sol) polarization free energy of solvation -36.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds