Wall clock time and date at job start Wed Apr 1 2020 00:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 H 1.09002 * 109.46695 * 59.99734 * 8 7 6 10 10 O 1.42895 * 109.47503 * 179.97438 * 8 7 6 11 11 C 1.42902 * 114.00204 * 270.00275 * 10 8 7 12 12 C 1.50702 * 109.46940 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00068 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99595 * 179.97438 * 12 11 10 15 15 C 1.46494 * 119.99495 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46723 * 179.97438 * 15 14 12 17 17 N 1.46899 * 109.47111 * 180.02562 * 16 15 14 18 18 C 1.46897 * 111.00080 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47302 * 180.02562 * 18 17 16 20 20 O 1.21290 * 119.99602 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00138 * 180.02562 * 19 18 17 22 22 C 1.37093 * 119.99715 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00486 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99721 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00091 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00040 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47165 * 59.99924 * 26 24 22 28 28 H 1.48503 * 109.47384 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47119 * 300.00043 * 26 24 22 30 30 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 32 32 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 37 37 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 39 39 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 40 40 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 41 41 H 1.08993 * 109.46902 * 299.99728 * 11 10 8 42 42 H 1.09003 * 109.46738 * 59.99580 * 11 10 8 43 43 H 0.96996 * 119.99960 * 359.97438 * 14 12 11 44 44 H 1.08993 * 109.47530 * 299.99887 * 15 14 12 45 45 H 1.09003 * 109.47420 * 60.00542 * 15 14 12 46 46 H 1.09004 * 109.47409 * 299.99894 * 16 15 14 47 47 H 1.08996 * 109.46984 * 60.00353 * 16 15 14 48 48 H 1.00900 * 111.00077 * 303.95807 * 17 16 15 49 49 H 1.08996 * 109.47356 * 299.99484 * 18 17 16 50 50 H 1.08995 * 109.47034 * 60.00245 * 18 17 16 51 51 H 0.96995 * 119.99656 * 359.97438 * 21 19 18 52 52 H 0.97001 * 120.00283 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2496 8 6 2.0394 -0.7216 1.2493 9 1 1.6758 -1.7491 1.2491 10 8 1.5631 -0.0485 2.4163 11 6 1.3688 -0.9056 3.5431 12 6 0.8686 -0.0946 4.7107 13 8 0.6960 1.0997 4.5900 14 7 0.6131 -0.6968 5.8892 15 6 0.1275 0.0916 7.0244 16 6 -0.0819 -0.8263 8.2304 17 7 -0.5695 -0.0359 9.3686 18 6 -0.7829 -0.8863 10.5472 19 6 -1.2824 -0.0426 11.6917 20 8 -1.4442 1.1499 11.5404 21 7 -1.5483 -0.6130 12.8835 22 6 -2.0022 0.1547 13.9247 23 1 -2.1471 1.2164 13.7899 24 6 -2.2769 -0.4335 15.1533 25 7 -2.1011 -1.7254 15.3173 26 14 -2.8961 0.6123 16.5719 27 1 -4.1774 1.2578 16.1886 28 1 -3.1112 -0.2472 17.7636 29 1 -1.8912 1.6580 16.8913 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6765 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.9333 -1.2354 -2.1390 36 1 3.9337 0.3056 -1.2487 37 1 5.1695 -1.4435 0.0008 38 1 3.7157 -2.4710 0.0001 39 1 3.9331 0.3054 1.2498 40 1 3.9321 -1.2365 2.1396 41 1 0.6367 -1.6735 3.2935 42 1 2.3149 -1.3778 3.8078 43 1 0.7508 -1.6521 5.9856 44 1 0.8603 0.8587 7.2741 45 1 -0.8182 0.5649 6.7600 46 1 -0.8151 -1.5932 7.9805 47 1 0.8635 -1.2999 8.4949 48 1 0.0618 0.7225 9.5790 49 1 -1.5208 -1.6535 10.3129 50 1 0.1575 -1.3604 10.8282 51 1 -1.4185 -1.5666 13.0045 52 1 -2.2932 -2.1360 16.1748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134631278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:49 Heat of formation + Delta-G solvation = -142.340791 kcal Electronic energy + Delta-G solvation = -28521.374153 eV Core-core repulsion = 24326.813623 eV Total energy + Delta-G solvation = -4194.560530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.26961 -39.45815 -38.32818 -36.87995 -36.17681 -34.37980 -33.75466 -33.03854 -31.25896 -30.78528 -29.82613 -27.88889 -26.53282 -25.72854 -23.86259 -22.85058 -22.14057 -21.77923 -20.92692 -20.27255 -19.29370 -17.93296 -17.60295 -17.24747 -16.49868 -16.13773 -15.99849 -15.75078 -15.40977 -15.12766 -14.81787 -14.68555 -14.49180 -14.29481 -13.97384 -13.87367 -13.62206 -13.44147 -13.30345 -13.12787 -12.89760 -12.65227 -12.39734 -12.32179 -11.97239 -11.91742 -11.56668 -11.53073 -11.47670 -11.42901 -11.33906 -11.06285 -11.01574 -10.85693 -10.73153 -10.44430 -10.22227 -10.00663 -9.84930 -9.50976 -9.28633 -8.51555 -8.14321 -7.97490 -6.42696 -3.83540 2.39483 2.45840 3.20180 3.25839 3.30475 3.50745 3.89061 4.10302 4.16124 4.20924 4.34640 4.43407 4.46534 4.60727 4.66751 4.72182 4.76299 4.78948 4.86359 4.94164 4.97497 4.99111 5.00626 5.16588 5.21881 5.25141 5.30896 5.36485 5.45918 5.47994 5.57410 5.61646 5.67000 5.70851 5.77075 5.78901 5.80926 5.88824 5.92229 5.93229 6.01246 6.14633 6.24384 6.71858 7.07778 7.24172 7.54364 7.55454 7.99778 8.04899 8.59984 9.16829 9.52672 10.04176 10.74933 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.001238 C = 0.001225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.463761 B =22607.913250 C =22852.917080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.117 4.117 7 C -0.144 4.144 8 C 0.094 3.906 9 H 0.061 0.939 10 O -0.353 6.353 11 C 0.045 3.955 12 C 0.512 3.488 13 O -0.515 6.515 14 N -0.729 5.729 15 C 0.122 3.878 16 C 0.050 3.950 17 N -0.666 5.666 18 C 0.053 3.947 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.562 5.562 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.400 0.600 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.033 0.967 48 H 0.353 0.647 49 H 0.087 0.913 50 H 0.045 0.955 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -7.527 -32.083 35.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.181 4.181 8 C 0.036 3.964 9 H 0.079 0.921 10 O -0.271 6.271 11 C -0.035 4.035 12 C 0.296 3.704 13 O -0.389 6.389 14 N -0.383 5.383 15 C -0.002 4.002 16 C -0.080 4.080 17 N -0.299 5.299 18 C -0.080 4.080 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.233 0.767 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.051 0.949 48 H 0.172 0.828 49 H 0.105 0.895 50 H 0.063 0.937 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.003 -5.767 -32.283 34.591 hybrid contribution 0.837 -1.242 1.284 1.972 sum 11.840 -7.009 -30.999 33.916 Atomic orbital electron populations 1.21791 0.94501 1.01661 1.02503 1.21187 0.96366 1.00442 0.92573 0.90212 1.21597 0.95465 1.00725 0.97213 1.21584 0.95653 1.01094 0.97770 1.21495 1.00562 0.99236 0.94139 1.22070 0.95743 1.02087 0.98234 1.22223 0.93128 0.95751 0.85250 0.92078 1.88054 1.86457 1.33618 1.18970 1.22215 1.01130 0.93019 0.87145 1.20217 0.78242 0.88467 0.83425 1.90766 1.50224 1.14946 1.82927 1.45788 1.68828 1.12258 1.11447 1.21291 1.00732 0.93855 0.84319 1.22075 0.98752 0.96076 0.91118 1.59921 1.53342 1.11849 1.04784 1.21666 1.00264 0.95684 0.90377 1.19777 0.85132 0.88745 0.83895 1.90536 1.57652 1.15494 1.82909 1.41840 1.57940 1.10920 1.09218 1.19672 1.40333 0.94119 0.88911 0.87928 1.25255 0.97616 0.96056 0.98906 1.69600 1.48963 1.09802 1.25990 0.85914 0.79456 0.79158 0.79675 1.19845 1.20972 1.19900 0.93088 0.91479 0.92638 0.91838 0.91294 0.91793 0.91706 0.91601 0.91940 0.90824 0.91807 0.90314 0.90442 0.76663 0.91244 0.90062 0.90438 0.94908 0.82756 0.89465 0.93714 0.77461 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.05 37.16 0.34 -0.70 16 2 C -0.09 -0.59 2.46 -90.62 -0.22 -0.81 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -0.55 5.20 -26.73 -0.14 -0.69 16 5 C -0.12 -0.57 5.92 -26.73 -0.16 -0.72 16 6 C -0.12 -0.54 5.92 -26.73 -0.16 -0.70 16 7 C -0.14 -0.88 5.54 -26.73 -0.15 -1.03 16 8 C 0.09 0.66 2.04 -26.73 -0.05 0.60 16 9 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 10 O -0.35 -3.53 8.85 -55.14 -0.49 -4.01 16 11 C 0.05 0.34 6.23 36.01 0.22 0.57 16 12 C 0.51 5.69 7.91 -10.98 -0.09 5.61 16 13 O -0.51 -8.40 16.50 -14.35 -0.24 -8.64 16 14 N -0.73 -6.44 5.56 -60.29 -0.33 -6.77 16 15 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 16 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 17 N -0.67 -10.42 6.12 -115.06 -0.70 -11.12 16 18 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 19 C 0.44 10.31 7.82 -10.98 -0.09 10.22 16 20 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 21 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 22 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 25 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.61 7.68 -51.93 -0.40 0.21 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 41 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 43 H 0.40 2.13 8.47 -40.82 -0.35 1.79 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 49 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 52 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 423.02 15.07 6.37 6.37 Total: -1.00 -34.89 423.02 -9.79 -44.67 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -9.31 Total: 10.07 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.81 Total: 7.08 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.37 Total: -55.77 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.64 Total: -28.44 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.89 -9.79 -44.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134631278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.666 kcal (2) G-P(sol) polarization free energy of solvation -34.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds