Wall clock time and date at job start Wed Apr 1 2020 00:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 H 1.09002 * 109.46695 * 59.99734 * 8 7 6 10 10 O 1.42895 * 109.47503 * 179.97438 * 8 7 6 11 11 C 1.42902 * 114.00204 * 270.00275 * 10 8 7 12 12 C 1.50702 * 109.46940 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00068 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99595 * 179.97438 * 12 11 10 15 15 C 1.46494 * 119.99495 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46723 * 179.97438 * 15 14 12 17 17 N 1.46899 * 109.47111 * 180.02562 * 16 15 14 18 18 C 1.46897 * 111.00080 * 179.97438 * 17 16 15 19 19 C 1.50707 * 109.47302 * 180.02562 * 18 17 16 20 20 O 1.21290 * 119.99602 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00138 * 180.02562 * 19 18 17 22 22 C 1.37093 * 119.99715 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00486 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99721 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00091 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00040 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47165 * 59.99924 * 26 24 22 28 28 H 1.48503 * 109.47384 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47119 * 300.00043 * 26 24 22 30 30 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 32 32 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 35 35 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 36 36 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 37 37 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 38 38 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 39 39 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 40 40 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 41 41 H 1.08993 * 109.46902 * 299.99728 * 11 10 8 42 42 H 1.09003 * 109.46738 * 59.99580 * 11 10 8 43 43 H 0.96996 * 119.99960 * 359.97438 * 14 12 11 44 44 H 1.08993 * 109.47530 * 299.99887 * 15 14 12 45 45 H 1.09003 * 109.47420 * 60.00542 * 15 14 12 46 46 H 1.09004 * 109.47409 * 299.99894 * 16 15 14 47 47 H 1.08996 * 109.46984 * 60.00353 * 16 15 14 48 48 H 1.00900 * 111.00077 * 303.95807 * 17 16 15 49 49 H 1.08996 * 109.47356 * 299.99484 * 18 17 16 50 50 H 1.08995 * 109.47034 * 60.00245 * 18 17 16 51 51 H 0.96995 * 119.99656 * 359.97438 * 21 19 18 52 52 H 0.97001 * 120.00283 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5694 -0.7222 1.2496 8 6 2.0394 -0.7216 1.2493 9 1 1.6758 -1.7491 1.2491 10 8 1.5631 -0.0485 2.4163 11 6 1.3688 -0.9056 3.5431 12 6 0.8686 -0.0946 4.7107 13 8 0.6960 1.0997 4.5900 14 7 0.6131 -0.6968 5.8892 15 6 0.1275 0.0916 7.0244 16 6 -0.0819 -0.8263 8.2304 17 7 -0.5695 -0.0359 9.3686 18 6 -0.7829 -0.8863 10.5472 19 6 -1.2824 -0.0426 11.6917 20 8 -1.4442 1.1499 11.5404 21 7 -1.5483 -0.6130 12.8835 22 6 -2.0022 0.1547 13.9247 23 1 -2.1471 1.2164 13.7899 24 6 -2.2769 -0.4335 15.1533 25 7 -2.1011 -1.7254 15.3173 26 14 -2.8961 0.6123 16.5719 27 1 -4.1774 1.2578 16.1886 28 1 -3.1112 -0.2472 17.7636 29 1 -1.8912 1.6580 16.8913 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6765 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.9333 -1.2354 -2.1390 36 1 3.9337 0.3056 -1.2487 37 1 5.1695 -1.4435 0.0008 38 1 3.7157 -2.4710 0.0001 39 1 3.9331 0.3054 1.2498 40 1 3.9321 -1.2365 2.1396 41 1 0.6367 -1.6735 3.2935 42 1 2.3149 -1.3778 3.8078 43 1 0.7508 -1.6521 5.9856 44 1 0.8603 0.8587 7.2741 45 1 -0.8182 0.5649 6.7600 46 1 -0.8151 -1.5932 7.9805 47 1 0.8635 -1.2999 8.4949 48 1 0.0618 0.7225 9.5790 49 1 -1.5208 -1.6535 10.3129 50 1 0.1575 -1.3604 10.8282 51 1 -1.4185 -1.5666 13.0045 52 1 -2.2932 -2.1360 16.1748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134631278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:48 Heat of formation + Delta-G solvation = -168.575249 kcal Electronic energy + Delta-G solvation = -28522.511764 eV Core-core repulsion = 24326.813623 eV Total energy + Delta-G solvation = -4195.698141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00179 -40.21005 -40.05787 -37.64398 -37.15974 -35.99425 -35.22638 -33.50618 -33.26942 -31.45685 -30.67648 -28.81998 -27.39224 -26.89443 -25.42622 -23.36028 -23.06081 -22.24239 -21.72962 -21.09655 -20.77539 -19.91888 -18.39984 -18.03139 -17.61285 -17.31714 -16.95040 -16.81427 -16.49704 -16.10213 -15.91517 -15.75346 -15.43256 -15.25613 -15.09556 -14.91289 -14.76115 -14.35807 -14.10972 -14.05443 -13.81723 -13.52295 -13.45405 -13.30542 -13.13522 -12.93158 -12.78537 -12.59650 -12.47947 -12.43124 -12.38817 -12.12097 -12.00402 -11.77370 -11.50451 -11.50305 -11.33936 -11.19224 -10.90474 -10.38910 -10.36375 -10.16841 -10.01472 -9.37829 -8.46657 -5.95279 1.40063 1.42272 1.52789 1.55087 1.72214 2.05645 2.29938 2.81578 3.11625 3.20882 3.54258 3.68232 3.76667 3.80430 3.92527 4.00317 4.10650 4.15300 4.22186 4.27675 4.30009 4.32231 4.33746 4.46585 4.50298 4.51259 4.53889 4.56638 4.62099 4.76365 4.89422 4.90896 4.94436 4.98698 5.05670 5.13605 5.18303 5.28946 5.30783 5.32051 5.37955 5.41049 5.41674 5.54126 5.85027 6.07433 6.17577 6.32046 6.54762 6.60605 7.12912 7.21985 7.56430 8.12363 8.70362 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.001238 C = 0.001225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.463761 B =22607.913250 C =22852.917080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.057 0.943 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.113 4.113 7 C -0.142 4.142 8 C 0.092 3.908 9 H 0.082 0.918 10 O -0.388 6.388 11 C 0.048 3.952 12 C 0.506 3.494 13 O -0.578 6.578 14 N -0.709 5.709 15 C 0.128 3.872 16 C 0.060 3.940 17 N -0.688 5.688 18 C 0.069 3.931 19 C 0.434 3.566 20 O -0.626 6.626 21 N -0.571 5.571 22 C -0.338 4.338 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.918 5.918 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.421 0.579 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.345 0.655 49 H 0.110 0.890 50 H 0.074 0.926 51 H 0.398 0.602 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.706 -10.518 -32.885 36.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.151 4.151 7 C -0.180 4.180 8 C 0.035 3.965 9 H 0.100 0.900 10 O -0.307 6.307 11 C -0.031 4.031 12 C 0.293 3.707 13 O -0.456 6.456 14 N -0.364 5.364 15 C 0.004 3.996 16 C -0.069 4.069 17 N -0.321 5.321 18 C -0.063 4.063 19 C 0.221 3.779 20 O -0.513 6.513 21 N -0.208 5.208 22 C -0.467 4.467 23 H 0.095 0.905 24 C -0.210 4.210 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.193 1.193 29 H -0.198 1.198 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.259 0.741 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.078 0.922 48 H 0.164 0.836 49 H 0.128 0.872 50 H 0.092 0.908 51 H 0.232 0.768 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.753 -8.849 -33.094 36.217 hybrid contribution 0.617 -0.299 1.480 1.631 sum 12.370 -9.149 -31.614 35.159 Atomic orbital electron populations 1.21746 0.94834 1.02123 1.01377 1.21210 0.96085 0.99681 0.93814 0.92406 1.21563 0.95661 1.01061 0.96161 1.21595 0.95391 1.00770 0.98402 1.21488 1.00846 0.99567 0.93160 1.22057 0.95255 1.01231 0.99453 1.22367 0.93537 0.96396 0.84177 0.90035 1.88029 1.86929 1.35516 1.20273 1.22352 1.03274 0.92325 0.85184 1.20998 0.77088 0.88010 0.84573 1.90741 1.53084 1.17813 1.84006 1.45572 1.67537 1.13132 1.10199 1.21039 0.99158 0.94086 0.85351 1.22068 1.00440 0.95507 0.88900 1.59887 1.54356 1.12460 1.05392 1.21521 1.01850 0.94701 0.88249 1.20967 0.83315 0.88862 0.84728 1.90505 1.59076 1.17906 1.83801 1.41896 1.58445 1.10977 1.09511 1.19634 1.42725 0.93604 0.90750 0.90485 1.25991 0.97109 0.97268 1.00582 1.69652 1.48786 1.10653 1.26821 0.85022 0.78681 0.77826 0.77010 1.19852 1.19340 1.19771 0.91752 0.94177 0.92171 0.90644 0.90986 0.90548 0.92703 0.91141 0.90654 0.92867 0.91090 0.87213 0.87423 0.74110 0.92784 0.92591 0.88600 0.92235 0.83608 0.87207 0.90832 0.76821 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.05 71.98 0.65 -1.33 16 2 C -0.09 -1.17 2.46 -10.79 -0.03 -1.20 16 3 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -0.89 5.20 30.59 0.16 -0.73 16 5 C -0.12 -0.95 5.92 30.59 0.18 -0.77 16 6 C -0.11 -0.82 5.92 30.60 0.18 -0.64 16 7 C -0.14 -1.57 5.54 30.60 0.17 -1.40 16 8 C 0.09 1.17 2.04 30.59 0.06 1.23 16 9 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 10 O -0.39 -7.61 8.85 -129.94 -1.15 -8.76 16 11 C 0.05 0.63 6.23 71.24 0.44 1.08 16 12 C 0.51 10.97 7.91 87.66 0.69 11.66 16 13 O -0.58 -19.71 16.50 16.00 0.26 -19.44 16 14 N -0.71 -11.31 5.56 -463.06 -2.57 -13.88 16 15 C 0.13 2.82 5.93 86.38 0.51 3.33 16 16 C 0.06 1.17 5.80 86.31 0.50 1.67 16 17 N -0.69 -20.70 6.12 -517.93 -3.17 -23.87 16 18 C 0.07 2.21 6.17 85.56 0.53 2.74 16 19 C 0.43 20.43 7.82 87.66 0.69 21.11 16 20 O -0.63 -35.06 15.78 -3.06 -0.05 -35.11 16 21 N -0.57 -28.96 5.29 -306.98 -1.62 -30.58 16 22 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 23 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 24 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 25 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 26 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.04 0.77 7.68 -2.39 -0.02 0.75 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.66 7.87 -2.39 -0.02 0.65 16 41 H 0.11 0.77 8.08 -2.39 -0.02 0.75 16 42 H 0.11 0.77 7.87 -2.39 -0.02 0.75 16 43 H 0.42 3.06 8.47 -92.71 -0.79 2.28 16 44 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.35 11.23 8.43 -89.69 -0.76 10.47 16 49 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 50 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 51 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 52 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -79.63 423.02 -1.32 -80.95 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -1.35 Total: 36.16 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.02 Total: 18.33 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -7.08 Total: -117.03 kcal Atomic # 8 Polarization: -62.38 SS G_CDS: -0.93 Total: -63.32 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -79.63 -1.32 -80.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134631278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.622 kcal (2) G-P(sol) polarization free energy of solvation -79.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds