Wall clock time and date at job start Wed Apr 1 2020 00:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47280 * 2 1 4 4 C 1.53002 * 109.46978 * 119.99927 * 2 1 3 5 5 C 1.52997 * 109.46978 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47164 * 299.99874 * 5 4 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.46975 * 239.99465 * 2 1 3 9 9 H 1.09001 * 109.47372 * 300.00372 * 8 2 1 10 10 O 1.42903 * 109.47176 * 60.00332 * 8 2 1 11 11 C 1.42900 * 114.00011 * 209.99840 * 10 8 2 12 12 C 1.50704 * 109.47138 * 179.97438 * 11 10 8 13 13 O 1.21282 * 119.99942 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99977 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99710 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46887 * 180.02562 * 15 14 12 17 17 N 1.46904 * 109.47231 * 179.97438 * 16 15 14 18 18 C 1.46897 * 111.00011 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47121 * 179.97438 * 18 17 16 20 20 O 1.21293 * 119.99667 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00165 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99812 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99795 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99826 * 179.97438 * 22 21 19 25 25 N 1.31418 * 119.99757 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99778 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47079 * 60.00459 * 26 24 22 28 28 H 1.48507 * 109.46685 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47006 * 299.99794 * 26 24 22 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47045 * 300.00240 * 1 2 3 32 32 H 1.09000 * 109.47140 * 60.00147 * 1 2 3 33 33 H 1.09002 * 109.47097 * 299.99801 * 4 2 1 34 34 H 1.09001 * 109.47142 * 59.99766 * 4 2 1 35 35 H 1.09001 * 109.47375 * 59.99908 * 5 4 2 36 36 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 37 37 H 1.08998 * 109.46505 * 299.99708 * 6 5 4 38 38 H 1.08996 * 109.46884 * 180.02562 * 6 5 4 39 39 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 41 41 H 1.08997 * 109.47280 * 299.99898 * 11 10 8 42 42 H 1.09008 * 109.46932 * 60.00239 * 11 10 8 43 43 H 0.97002 * 120.00001 * 0.02562 * 14 12 11 44 44 H 1.08997 * 109.47299 * 300.00237 * 15 14 12 45 45 H 1.08996 * 109.47328 * 60.00530 * 15 14 12 46 46 H 1.08997 * 109.47311 * 300.00188 * 16 15 14 47 47 H 1.09005 * 109.47245 * 59.99849 * 16 15 14 48 48 H 1.00896 * 110.99749 * 56.04510 * 17 16 15 49 49 H 1.08995 * 109.47472 * 299.99955 * 18 17 16 50 50 H 1.09002 * 109.46745 * 60.00391 * 18 17 16 51 51 H 0.97002 * 119.99752 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99405 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 6 3.5704 -0.7205 -1.2489 8 6 2.0399 -0.7214 -1.2492 9 1 1.6765 -1.7490 -1.2491 10 8 1.5636 -0.0478 -2.4160 11 6 1.3699 -0.9044 -3.5433 12 6 0.8686 -0.0933 -4.7103 13 8 0.6948 1.1008 -4.5888 14 7 0.6143 -0.6948 -5.8893 15 6 0.1275 0.0938 -7.0239 16 6 -0.0801 -0.8234 -8.2308 17 7 -0.5688 -0.0327 -9.3684 18 6 -0.7794 -0.8823 -10.5482 19 6 -1.2801 -0.0384 -11.6920 20 8 -1.4448 1.1536 -11.5394 21 7 -1.5449 -0.6081 -12.8843 22 6 -1.9999 0.1597 -13.9250 23 1 -2.1466 1.2210 -13.7891 24 6 -2.2724 -0.4276 -15.1544 25 7 -2.0934 -1.7190 -15.3198 26 14 -2.8931 0.6185 -16.5721 27 1 -1.8904 1.6669 -16.8897 28 1 -3.1053 -0.2402 -17.7650 29 1 -4.1762 1.2604 -16.1889 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6766 -0.2074 2.1393 34 1 1.6766 -1.7489 1.2493 35 1 3.9329 0.3071 1.2498 36 1 3.9332 -1.2341 2.1398 37 1 3.7175 -2.4694 0.0003 38 1 5.1704 -1.4416 0.0008 39 1 3.9338 -1.2343 -2.1389 40 1 3.9335 0.3073 -1.2487 41 1 2.3161 -1.3762 -3.8080 42 1 0.6379 -1.6728 -3.2941 43 1 0.7536 -1.6498 -5.9866 44 1 -0.8189 0.5653 -6.7593 45 1 0.8592 0.8624 -7.2729 46 1 0.8661 -1.2952 -8.4956 47 1 -0.8120 -1.5917 -7.9816 48 1 0.0613 0.7269 -9.5780 49 1 0.1623 -1.3538 -10.8292 50 1 -1.5157 -1.6515 -10.3151 51 1 -1.4134 -1.5615 -13.0061 52 1 -2.2832 -2.1289 -16.1782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134631281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:01 Heat of formation + Delta-G solvation = -142.361578 kcal Electronic energy + Delta-G solvation = -28521.052192 eV Core-core repulsion = 24326.490761 eV Total energy + Delta-G solvation = -4194.561431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.26808 -39.45695 -38.32806 -36.87935 -36.17657 -34.37934 -33.75373 -33.03823 -31.25781 -30.78362 -29.82582 -27.88846 -26.53261 -25.72852 -23.86245 -22.85134 -22.14066 -21.77816 -20.92674 -20.27261 -19.29345 -17.93260 -17.60237 -17.24694 -16.49862 -16.13779 -15.99800 -15.75097 -15.40919 -15.12762 -14.81767 -14.68566 -14.49165 -14.29445 -13.97358 -13.87338 -13.62136 -13.44095 -13.30338 -13.12764 -12.89680 -12.65217 -12.39746 -12.32203 -11.97248 -11.91738 -11.56744 -11.53048 -11.47640 -11.42901 -11.33833 -11.06264 -11.01572 -10.85697 -10.73194 -10.44418 -10.22215 -10.00628 -9.84881 -9.50940 -9.28653 -8.51613 -8.14394 -7.97441 -6.42729 -3.83562 2.39511 2.45841 3.20190 3.25823 3.30472 3.50790 3.89038 4.10313 4.16143 4.20869 4.34654 4.43388 4.46535 4.60718 4.66795 4.72188 4.76232 4.78956 4.86334 4.94147 4.97493 4.99106 5.00619 5.16585 5.21876 5.25121 5.30914 5.36470 5.45939 5.48000 5.57449 5.61652 5.66983 5.70814 5.77106 5.78884 5.80909 5.88801 5.92232 5.93206 6.01245 6.14593 6.24348 6.71851 7.07715 7.24162 7.54387 7.55356 7.99788 8.04922 8.59953 9.16818 9.52653 10.04147 10.74904 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.001238 C = 0.001225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.464980 B =22608.022001 C =22853.826263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.117 4.117 7 C -0.143 4.143 8 C 0.094 3.906 9 H 0.061 0.939 10 O -0.353 6.353 11 C 0.045 3.955 12 C 0.512 3.488 13 O -0.515 6.515 14 N -0.729 5.729 15 C 0.122 3.878 16 C 0.050 3.950 17 N -0.665 5.665 18 C 0.053 3.947 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.400 0.600 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.033 0.967 47 H 0.077 0.923 48 H 0.353 0.647 49 H 0.045 0.955 50 H 0.087 0.913 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.974 -7.534 32.079 35.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.161 4.161 6 C -0.154 4.154 7 C -0.181 4.181 8 C 0.036 3.964 9 H 0.079 0.921 10 O -0.271 6.271 11 C -0.035 4.035 12 C 0.296 3.704 13 O -0.389 6.389 14 N -0.383 5.383 15 C -0.002 4.002 16 C -0.080 4.080 17 N -0.299 5.299 18 C -0.080 4.080 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.233 0.767 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.051 0.949 47 H 0.096 0.904 48 H 0.172 0.828 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.001 -5.776 32.282 34.590 hybrid contribution 0.840 -1.239 -1.284 1.972 sum 11.841 -7.015 30.998 33.916 Atomic orbital electron populations 1.21790 0.94501 1.01660 1.02503 1.21187 0.96365 1.00445 0.92578 0.90214 1.21597 0.95465 1.00726 0.97212 1.21586 0.95649 1.01096 0.97769 1.21493 1.00561 0.99238 0.94143 1.22077 0.95732 1.02086 0.98227 1.22235 0.93124 0.95748 0.85248 0.92064 1.88056 1.86463 1.33625 1.18954 1.22216 1.01124 0.93026 0.87144 1.20217 0.78250 0.88465 0.83422 1.90766 1.50221 1.14957 1.82924 1.45790 1.68802 1.12301 1.11427 1.21290 1.00724 0.93853 0.84327 1.22076 0.98745 0.96088 0.91121 1.59938 1.53396 1.11769 1.04768 1.21668 1.00263 0.95705 0.90368 1.19776 0.85136 0.88743 0.83892 1.90537 1.57623 1.15536 1.82895 1.41843 1.57912 1.10954 1.09211 1.19673 1.40304 0.94153 0.88898 0.87928 1.25259 0.97619 0.96063 0.98901 1.69607 1.48979 1.09851 1.25919 0.85912 0.79458 0.79158 0.79666 1.19900 1.20972 1.19844 0.93090 0.92643 0.91473 0.91301 0.91833 0.91704 0.91794 0.91945 0.91603 0.91808 0.90822 0.90435 0.90321 0.76662 0.90062 0.91244 0.94906 0.90437 0.82766 0.93711 0.89464 0.77460 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.05 37.16 0.34 -0.70 16 2 C -0.09 -0.59 2.46 -90.62 -0.22 -0.81 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -0.55 5.20 -26.73 -0.14 -0.69 16 5 C -0.12 -0.57 5.92 -26.73 -0.16 -0.72 16 6 C -0.12 -0.54 5.92 -26.73 -0.16 -0.70 16 7 C -0.14 -0.88 5.54 -26.71 -0.15 -1.03 16 8 C 0.09 0.66 2.05 -26.71 -0.05 0.60 16 9 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 10 O -0.35 -3.53 8.85 -55.14 -0.49 -4.01 16 11 C 0.05 0.34 6.23 36.01 0.22 0.57 16 12 C 0.51 5.69 7.91 -10.98 -0.09 5.61 16 13 O -0.51 -8.40 16.50 -14.35 -0.24 -8.64 16 14 N -0.73 -6.44 5.56 -60.29 -0.33 -6.77 16 15 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 16 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 17 N -0.67 -10.41 6.13 -115.06 -0.70 -11.12 16 18 C 0.05 0.90 6.17 -4.98 -0.03 0.86 16 19 C 0.44 10.31 7.82 -10.99 -0.09 10.22 16 20 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 21 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 22 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 25 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.61 7.68 -51.93 -0.40 0.21 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 42 H 0.08 0.41 8.09 -51.92 -0.42 -0.01 16 43 H 0.40 2.13 8.47 -40.82 -0.35 1.79 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 49 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 51 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 52 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 423.04 15.07 6.38 6.38 Total: -1.00 -34.89 423.04 -9.79 -44.68 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -9.32 Total: 10.08 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.81 Total: 7.07 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.37 Total: -55.77 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.64 Total: -28.44 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -34.89 -9.79 -44.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134631281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.685 kcal (2) G-P(sol) polarization free energy of solvation -34.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds