Wall clock time and date at job start Wed Apr 1 2020 00:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47280 * 2 1 4 4 C 1.53002 * 109.46978 * 119.99927 * 2 1 3 5 5 C 1.52997 * 109.46978 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47164 * 299.99874 * 5 4 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.46975 * 239.99465 * 2 1 3 9 9 H 1.09001 * 109.47372 * 300.00372 * 8 2 1 10 10 O 1.42903 * 109.47176 * 60.00332 * 8 2 1 11 11 C 1.42900 * 114.00011 * 209.99840 * 10 8 2 12 12 C 1.50704 * 109.47138 * 179.97438 * 11 10 8 13 13 O 1.21282 * 119.99942 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99977 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99710 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46887 * 180.02562 * 15 14 12 17 17 N 1.46904 * 109.47231 * 179.97438 * 16 15 14 18 18 C 1.46897 * 111.00011 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47121 * 179.97438 * 18 17 16 20 20 O 1.21293 * 119.99667 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00165 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99812 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99795 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99826 * 179.97438 * 22 21 19 25 25 N 1.31418 * 119.99757 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99778 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47079 * 60.00459 * 26 24 22 28 28 H 1.48507 * 109.46685 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47006 * 299.99794 * 26 24 22 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47045 * 300.00240 * 1 2 3 32 32 H 1.09000 * 109.47140 * 60.00147 * 1 2 3 33 33 H 1.09002 * 109.47097 * 299.99801 * 4 2 1 34 34 H 1.09001 * 109.47142 * 59.99766 * 4 2 1 35 35 H 1.09001 * 109.47375 * 59.99908 * 5 4 2 36 36 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 37 37 H 1.08998 * 109.46505 * 299.99708 * 6 5 4 38 38 H 1.08996 * 109.46884 * 180.02562 * 6 5 4 39 39 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 40 40 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 41 41 H 1.08997 * 109.47280 * 299.99898 * 11 10 8 42 42 H 1.09008 * 109.46932 * 60.00239 * 11 10 8 43 43 H 0.97002 * 120.00001 * 0.02562 * 14 12 11 44 44 H 1.08997 * 109.47299 * 300.00237 * 15 14 12 45 45 H 1.08996 * 109.47328 * 60.00530 * 15 14 12 46 46 H 1.08997 * 109.47311 * 300.00188 * 16 15 14 47 47 H 1.09005 * 109.47245 * 59.99849 * 16 15 14 48 48 H 1.00896 * 110.99749 * 56.04510 * 17 16 15 49 49 H 1.08995 * 109.47472 * 299.99955 * 18 17 16 50 50 H 1.09002 * 109.46745 * 60.00391 * 18 17 16 51 51 H 0.97002 * 119.99752 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99405 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 6 3.5704 -0.7205 -1.2489 8 6 2.0399 -0.7214 -1.2492 9 1 1.6765 -1.7490 -1.2491 10 8 1.5636 -0.0478 -2.4160 11 6 1.3699 -0.9044 -3.5433 12 6 0.8686 -0.0933 -4.7103 13 8 0.6948 1.1008 -4.5888 14 7 0.6143 -0.6948 -5.8893 15 6 0.1275 0.0938 -7.0239 16 6 -0.0801 -0.8234 -8.2308 17 7 -0.5688 -0.0327 -9.3684 18 6 -0.7794 -0.8823 -10.5482 19 6 -1.2801 -0.0384 -11.6920 20 8 -1.4448 1.1536 -11.5394 21 7 -1.5449 -0.6081 -12.8843 22 6 -1.9999 0.1597 -13.9250 23 1 -2.1466 1.2210 -13.7891 24 6 -2.2724 -0.4276 -15.1544 25 7 -2.0934 -1.7190 -15.3198 26 14 -2.8931 0.6185 -16.5721 27 1 -1.8904 1.6669 -16.8897 28 1 -3.1053 -0.2402 -17.7650 29 1 -4.1762 1.2604 -16.1889 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6766 -0.2074 2.1393 34 1 1.6766 -1.7489 1.2493 35 1 3.9329 0.3071 1.2498 36 1 3.9332 -1.2341 2.1398 37 1 3.7175 -2.4694 0.0003 38 1 5.1704 -1.4416 0.0008 39 1 3.9338 -1.2343 -2.1389 40 1 3.9335 0.3073 -1.2487 41 1 2.3161 -1.3762 -3.8080 42 1 0.6379 -1.6728 -3.2941 43 1 0.7536 -1.6498 -5.9866 44 1 -0.8189 0.5653 -6.7593 45 1 0.8592 0.8624 -7.2729 46 1 0.8661 -1.2952 -8.4956 47 1 -0.8120 -1.5917 -7.9816 48 1 0.0613 0.7269 -9.5780 49 1 0.1623 -1.3538 -10.8292 50 1 -1.5157 -1.6515 -10.3151 51 1 -1.4134 -1.5615 -13.0061 52 1 -2.2832 -2.1289 -16.1782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134631281.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:00 Heat of formation + Delta-G solvation = -168.598612 kcal Electronic energy + Delta-G solvation = -28522.189915 eV Core-core repulsion = 24326.490761 eV Total energy + Delta-G solvation = -4195.699154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.00069 -40.20919 -40.05674 -37.64366 -37.15926 -35.99312 -35.22604 -33.50589 -33.26824 -31.45592 -30.67547 -28.81929 -27.39249 -26.89419 -25.42604 -23.36087 -23.06100 -22.24127 -21.72932 -21.09626 -20.77556 -19.91856 -18.39945 -18.03072 -17.61273 -17.31717 -16.94958 -16.81430 -16.49677 -16.10150 -15.91515 -15.75308 -15.43245 -15.25598 -15.09529 -14.91270 -14.76099 -14.35760 -14.10919 -14.05440 -13.81716 -13.52243 -13.45311 -13.30502 -13.13520 -12.93140 -12.78575 -12.59638 -12.47963 -12.43121 -12.38810 -12.12062 -12.00485 -11.77290 -11.50418 -11.50298 -11.33947 -11.19257 -10.90436 -10.38850 -10.36391 -10.16849 -10.01423 -9.37941 -8.46695 -5.95304 1.40083 1.42260 1.52806 1.55123 1.72213 2.05633 2.29943 2.81623 3.11651 3.20857 3.54294 3.68255 3.76620 3.80435 3.92526 4.00273 4.10628 4.15320 4.22203 4.27708 4.29978 4.32206 4.33760 4.46568 4.50309 4.51244 4.53895 4.56604 4.62048 4.76349 4.89408 4.90888 4.94429 4.98717 5.05670 5.13633 5.18304 5.28927 5.30792 5.32035 5.37940 5.41068 5.41660 5.54143 5.84991 6.07423 6.17582 6.31959 6.54766 6.60574 7.12896 7.22000 7.56410 8.12338 8.70329 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.001238 C = 0.001225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.464980 B =22608.022001 C =22853.826263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.057 0.943 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.113 4.113 7 C -0.142 4.142 8 C 0.092 3.908 9 H 0.082 0.918 10 O -0.388 6.388 11 C 0.048 3.952 12 C 0.506 3.494 13 O -0.578 6.578 14 N -0.709 5.709 15 C 0.128 3.872 16 C 0.060 3.940 17 N -0.688 5.688 18 C 0.069 3.931 19 C 0.434 3.566 20 O -0.626 6.626 21 N -0.571 5.571 22 C -0.337 4.337 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.918 5.918 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.273 1.273 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.421 0.579 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.345 0.655 49 H 0.074 0.926 50 H 0.110 0.890 51 H 0.398 0.602 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.710 -10.526 32.879 36.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.144 4.144 5 C -0.162 4.162 6 C -0.151 4.151 7 C -0.180 4.180 8 C 0.035 3.965 9 H 0.100 0.900 10 O -0.307 6.307 11 C -0.031 4.031 12 C 0.293 3.707 13 O -0.456 6.456 14 N -0.364 5.364 15 C 0.004 3.996 16 C -0.069 4.069 17 N -0.321 5.321 18 C -0.063 4.063 19 C 0.221 3.779 20 O -0.513 6.513 21 N -0.208 5.208 22 C -0.467 4.467 23 H 0.095 0.905 24 C -0.210 4.210 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.199 1.199 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.259 0.741 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.114 0.886 48 H 0.164 0.836 49 H 0.092 0.908 50 H 0.128 0.872 51 H 0.232 0.768 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.754 -8.859 33.090 36.215 hybrid contribution 0.619 -0.297 -1.479 1.631 sum 12.373 -9.155 31.611 35.159 Atomic orbital electron populations 1.21745 0.94835 1.02124 1.01376 1.21209 0.96084 0.99683 0.93821 0.92410 1.21563 0.95662 1.01062 0.96159 1.21597 0.95387 1.00771 0.98401 1.21485 1.00844 0.99571 0.93164 1.22063 0.95244 1.01229 0.99447 1.22379 0.93532 0.96394 0.84173 0.90020 1.88031 1.86935 1.35523 1.20257 1.22353 1.03267 0.92332 0.85184 1.20998 0.77097 0.88007 0.84568 1.90741 1.53081 1.17824 1.84004 1.45574 1.67511 1.13174 1.10180 1.21038 0.99150 0.94083 0.85359 1.22069 1.00433 0.95518 0.88903 1.59905 1.54414 1.12378 1.05374 1.21523 1.01846 0.94721 0.88244 1.20966 0.83323 0.88860 0.84721 1.90506 1.59050 1.17948 1.83786 1.41899 1.58416 1.11011 1.09505 1.19635 1.42696 0.93640 0.90736 0.90485 1.25995 0.97114 0.97275 1.00575 1.69659 1.48803 1.10702 1.26750 0.85020 0.78679 0.77824 0.77006 1.19771 1.19338 1.19850 0.91752 0.92177 0.94171 0.90996 0.90638 0.92701 0.90550 0.90659 0.91143 0.91089 0.92865 0.87413 0.87222 0.74109 0.92589 0.92785 0.92231 0.88600 0.83619 0.90828 0.87207 0.76820 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.05 71.98 0.65 -1.33 16 2 C -0.09 -1.17 2.46 -10.80 -0.03 -1.20 16 3 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -0.89 5.20 30.59 0.16 -0.73 16 5 C -0.12 -0.95 5.92 30.60 0.18 -0.77 16 6 C -0.11 -0.82 5.92 30.60 0.18 -0.64 16 7 C -0.14 -1.57 5.54 30.61 0.17 -1.40 16 8 C 0.09 1.17 2.05 30.61 0.06 1.23 16 9 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 10 O -0.39 -7.61 8.85 -129.94 -1.15 -8.76 16 11 C 0.05 0.63 6.23 71.24 0.44 1.08 16 12 C 0.51 10.97 7.91 87.66 0.69 11.66 16 13 O -0.58 -19.71 16.50 16.00 0.26 -19.45 16 14 N -0.71 -11.31 5.56 -463.06 -2.57 -13.88 16 15 C 0.13 2.82 5.93 86.38 0.51 3.33 16 16 C 0.06 1.16 5.80 86.30 0.50 1.66 16 17 N -0.69 -20.69 6.13 -517.93 -3.17 -23.87 16 18 C 0.07 2.21 6.17 85.56 0.53 2.73 16 19 C 0.43 20.43 7.82 87.66 0.69 21.11 16 20 O -0.63 -35.07 15.78 -3.07 -0.05 -35.11 16 21 N -0.57 -28.96 5.29 -306.98 -1.62 -30.59 16 22 C -0.34 -19.19 9.68 84.04 0.81 -18.37 16 23 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 24 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 25 N -0.92 -48.98 13.05 21.67 0.28 -48.70 16 26 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 28 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 0.77 7.68 -2.39 -0.02 0.75 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.07 0.66 7.87 -2.39 -0.02 0.65 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 0.77 7.87 -2.39 -0.02 0.75 16 42 H 0.11 0.76 8.09 -2.38 -0.02 0.75 16 43 H 0.42 3.06 8.47 -92.71 -0.79 2.28 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 48 H 0.35 11.23 8.43 -89.70 -0.76 10.47 16 49 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 51 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 52 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -79.64 423.04 -1.32 -80.96 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -1.35 Total: 36.17 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.02 Total: 18.32 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -7.09 Total: -117.03 kcal Atomic # 8 Polarization: -62.39 SS G_CDS: -0.93 Total: -63.32 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -79.64 -1.32 -80.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134631281.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.637 kcal (2) G-P(sol) polarization free energy of solvation -79.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds