Wall clock time and date at job start Wed Apr 1 2020 00:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47107 * 2 1 4 4 O 1.21277 * 119.99895 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00253 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00251 * 174.67962 * 5 3 2 7 7 C 1.52996 * 109.52165 * 304.38103 * 6 5 3 8 8 C 1.53007 * 109.47269 * 304.20432 * 7 6 5 9 9 O 1.42900 * 109.46963 * 184.91492 * 8 7 6 10 10 C 1.42907 * 113.99764 * 179.97438 * 9 8 7 11 11 C 1.53115 * 109.52164 * 184.19183 * 6 5 3 12 12 C 1.53043 * 109.28050 * 297.74595 * 11 6 5 13 13 N 1.46839 * 109.52111 * 300.82457 * 12 11 6 14 14 C 1.46904 * 110.99802 * 185.83589 * 13 12 11 15 15 C 1.50705 * 109.47266 * 168.50045 * 14 13 12 16 16 O 1.21289 * 119.99641 * 3.96460 * 15 14 13 17 17 N 1.34772 * 119.99810 * 183.95751 * 15 14 13 18 18 C 1.37106 * 119.99812 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99908 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00421 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47128 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47286 * 119.99826 * 22 20 18 25 25 H 1.48504 * 109.47320 * 240.00322 * 22 20 18 26 26 C 1.46848 * 111.20179 * 61.74059 * 13 12 11 27 27 C 1.53040 * 109.52254 * 298.25531 * 26 13 12 28 28 H 1.09000 * 109.47239 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47235 * 299.99985 * 1 2 3 30 30 H 1.09007 * 109.46908 * 59.99877 * 1 2 3 31 31 H 1.08997 * 109.47235 * 240.00015 * 2 1 3 32 32 H 1.08994 * 109.47023 * 119.99947 * 2 1 3 33 33 H 0.97010 * 119.99679 * 354.95382 * 5 3 2 34 34 H 1.08997 * 109.47209 * 64.19842 * 7 6 5 35 35 H 1.08996 * 109.47246 * 184.20404 * 7 6 5 36 36 H 1.09009 * 109.46530 * 304.90968 * 8 7 6 37 37 H 1.08998 * 109.47313 * 64.91026 * 8 7 6 38 38 H 1.08998 * 109.46689 * 299.99608 * 10 9 8 39 39 H 1.08999 * 109.46647 * 59.99589 * 10 9 8 40 40 H 1.08994 * 109.47121 * 179.97438 * 10 9 8 41 41 H 1.08997 * 109.50515 * 57.69002 * 11 6 5 42 42 H 1.09003 * 109.50358 * 177.80898 * 11 6 5 43 43 H 1.08998 * 109.46075 * 180.80491 * 12 11 6 44 44 H 1.09005 * 109.45544 * 60.83934 * 12 11 6 45 45 H 1.09002 * 109.47289 * 288.50141 * 14 13 12 46 46 H 1.09001 * 109.46845 * 48.50450 * 14 13 12 47 47 H 0.97001 * 120.00245 * 0.02562 * 17 15 14 48 48 H 0.97004 * 120.00893 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.46201 * 178.23947 * 26 13 12 50 50 H 1.09001 * 109.45213 * 58.26957 * 26 13 12 51 51 H 1.08999 * 109.50496 * 299.23923 * 27 26 13 52 52 H 1.08996 * 109.49883 * 179.11775 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8467 3.0430 -0.1171 7 6 3.2708 3.6842 -1.3812 8 6 3.6228 2.8228 -2.5958 9 8 3.1849 3.4783 -3.7877 10 6 3.4672 2.7539 -4.9867 11 6 5.3759 3.0372 -0.1959 12 6 5.9462 2.4497 1.0971 13 7 5.5001 3.2555 2.2408 14 6 6.1395 2.8041 3.4840 15 6 5.8859 3.8132 4.5743 16 8 5.1771 4.7735 4.3589 17 7 6.4467 3.6483 5.7887 18 6 6.2157 4.5660 6.7808 19 1 5.5846 5.4212 6.5889 20 6 6.7943 4.3964 8.0325 21 7 7.5625 3.3561 8.2658 22 14 6.4789 5.6463 9.3844 23 1 5.5861 6.7162 8.8709 24 1 5.8323 4.9735 10.5397 25 1 7.7679 6.2434 9.8171 26 6 4.0370 3.2372 2.3648 27 6 3.4097 3.8482 1.1097 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9871 0.9330 0.0748 34 1 2.1872 3.7578 -1.2899 35 1 3.6934 4.6809 -1.5080 36 1 4.7022 2.6768 -2.6371 37 1 3.1282 1.8552 -2.5106 38 1 4.5435 2.6069 -5.0774 39 1 2.9698 1.7848 -4.9513 40 1 3.1035 3.3175 -5.8458 41 1 5.6943 2.4298 -1.0430 42 1 5.7376 4.0576 -0.3225 43 1 7.0351 2.4574 1.0501 44 1 5.5951 1.4246 1.2160 45 1 5.7237 1.8402 3.7773 46 1 7.2130 2.7035 3.3246 47 1 7.0139 2.8804 5.9608 48 1 7.9668 3.2378 9.1396 49 1 3.7393 3.8169 3.2386 50 1 3.6951 2.2084 2.4778 51 1 3.7405 4.8814 1.0036 52 1 2.3235 3.8202 1.1954 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150889050.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:34 Heat of formation + Delta-G solvation = -118.627373 kcal Electronic energy + Delta-G solvation = -31493.342203 eV Core-core repulsion = 27299.809965 eV Total energy + Delta-G solvation = -4193.532239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.91254 -38.81779 -38.14834 -37.55818 -35.26236 -33.82354 -33.21857 -31.88290 -31.29009 -30.77937 -30.41889 -27.43531 -26.26701 -24.96849 -24.37457 -23.69596 -22.80014 -21.20816 -20.57183 -19.23286 -19.08649 -17.84653 -17.47382 -16.79842 -16.33733 -16.04900 -15.75309 -15.63906 -15.26581 -14.92092 -14.79250 -14.57043 -14.25956 -14.12242 -13.82057 -13.73222 -13.50631 -13.37872 -12.97199 -12.72455 -12.52473 -12.37124 -12.04254 -12.00877 -11.92900 -11.79246 -11.48406 -11.47204 -11.36909 -11.32441 -11.22052 -11.02234 -10.95407 -10.49375 -10.40769 -10.31942 -10.21026 -9.88753 -9.53229 -9.46921 -9.11043 -8.40269 -7.95918 -7.80573 -6.40620 -3.81143 2.56109 3.03517 3.17232 3.27803 3.35287 3.51009 3.90180 4.01032 4.25913 4.43163 4.62943 4.73019 4.82794 4.83847 4.86425 4.90697 5.01685 5.04292 5.07798 5.18456 5.22569 5.25915 5.28142 5.30477 5.36022 5.40417 5.55553 5.58982 5.64558 5.70308 5.73771 5.81785 5.83665 5.88292 5.92983 6.01049 6.01960 6.12547 6.17442 6.29381 6.42798 6.57523 6.61122 6.93294 7.31735 7.41332 7.46191 7.56862 8.08394 8.16329 8.63372 9.19903 9.56109 10.08093 10.77269 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.002414 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.887826 B =11596.979411 C =12338.162021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.512 3.488 4 O -0.529 6.529 5 N -0.725 5.725 6 C 0.184 3.816 7 C -0.129 4.129 8 C 0.068 3.932 9 O -0.391 6.391 10 C 0.032 3.968 11 C -0.119 4.119 12 C 0.055 3.945 13 N -0.514 5.514 14 C 0.047 3.953 15 C 0.445 3.555 16 O -0.575 6.575 17 N -0.566 5.566 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.059 3.941 27 C -0.119 4.119 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.396 0.604 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.026 0.974 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.104 0.896 50 H 0.019 0.981 51 H 0.080 0.920 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 -10.843 -22.189 25.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.298 3.702 4 O -0.406 6.406 5 N -0.378 5.378 6 C 0.098 3.902 7 C -0.168 4.168 8 C -0.009 4.009 9 O -0.310 6.310 10 C -0.064 4.064 11 C -0.157 4.157 12 C -0.073 4.073 13 N -0.238 5.238 14 C -0.084 4.084 15 C 0.230 3.770 16 O -0.459 6.459 17 N -0.203 5.203 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.068 4.068 27 C -0.157 4.157 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.044 0.956 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.122 0.878 50 H 0.037 0.963 51 H 0.098 0.902 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.284 -8.903 -22.249 24.774 hybrid contribution 0.712 -1.579 1.002 2.001 sum -5.571 -10.481 -21.246 24.337 Atomic orbital electron populations 1.21513 0.92985 1.01427 1.03461 1.21653 0.98795 0.94180 1.04011 1.20694 0.82161 0.91688 0.75615 1.90663 1.55323 1.46141 1.48423 1.46252 1.07082 1.09019 1.75455 1.20370 0.93408 0.81420 0.94997 1.21915 1.04427 0.99346 0.91078 1.22539 0.97879 0.95633 0.84821 1.87896 1.81980 1.46947 1.14215 1.22712 0.99562 0.96558 0.87593 1.21953 0.93050 1.03669 0.97033 1.22087 1.00173 0.94085 0.90974 1.61525 1.07502 1.52837 1.01959 1.21827 0.99871 0.96414 0.90334 1.19747 0.85291 0.88461 0.83498 1.90488 1.41374 1.32713 1.81358 1.41877 1.44224 1.24667 1.09496 1.19743 1.28263 1.04799 0.89760 0.87874 1.25250 0.96491 0.97660 0.98632 1.69616 1.32379 1.28485 1.23989 0.85813 0.78173 0.80214 0.80232 1.19210 1.20809 1.20772 1.22192 0.86102 0.98647 0.99880 1.21940 1.01672 0.99701 0.92391 0.92292 0.91806 0.92048 0.89337 0.89104 0.76905 0.88757 0.90118 0.93397 0.93893 0.94188 0.94362 0.89732 0.91159 0.89040 0.90518 0.95607 0.93653 0.89501 0.77560 0.91982 0.87822 0.96311 0.90170 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 37.16 0.34 -0.79 16 2 C -0.15 -1.10 6.42 -27.88 -0.18 -1.28 16 3 C 0.51 5.53 6.82 -10.98 -0.07 5.46 16 4 O -0.53 -7.71 12.27 5.56 0.07 -7.64 16 5 N -0.73 -6.82 3.44 -47.50 -0.16 -6.99 16 6 C 0.18 2.03 0.35 -131.70 -0.05 1.99 16 7 C -0.13 -1.49 4.28 -26.73 -0.11 -1.60 16 8 C 0.07 0.67 5.50 37.16 0.20 0.88 16 9 O -0.39 -4.45 10.70 -35.23 -0.38 -4.82 16 10 C 0.03 0.25 11.01 101.05 1.11 1.36 16 11 C -0.12 -1.18 4.63 -26.65 -0.12 -1.30 16 12 C 0.06 0.63 5.30 -3.84 -0.02 0.61 16 13 N -0.51 -8.18 4.40 -236.10 -1.04 -9.22 16 14 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 15 C 0.44 10.41 7.53 -10.99 -0.08 10.32 16 16 O -0.58 -15.41 13.84 5.55 0.08 -15.33 16 17 N -0.57 -14.28 5.29 -10.96 -0.06 -14.33 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.56 13.05 55.49 0.72 -23.84 16 22 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.06 0.98 4.96 -3.83 -0.02 0.96 16 27 C -0.12 -1.73 4.77 -26.65 -0.13 -1.86 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.06 0.56 8.10 -51.92 -0.42 0.14 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.40 2.82 7.35 -40.82 -0.30 2.52 16 34 H 0.09 1.32 6.19 -51.93 -0.32 1.00 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.41 6.39 -51.92 -0.33 0.08 16 37 H 0.04 0.41 7.31 -51.93 -0.38 0.03 16 38 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.53 6.58 -51.93 -0.34 0.19 16 42 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 0.81 8.00 -51.93 -0.42 0.39 16 44 H 0.03 0.26 6.94 -51.93 -0.36 -0.10 16 45 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 46 H 0.09 1.35 7.96 -51.93 -0.41 0.94 16 47 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.10 2.15 5.78 -51.93 -0.30 1.85 16 50 H 0.02 0.29 7.69 -51.93 -0.40 -0.11 16 51 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 52 H 0.08 1.36 6.28 -51.93 -0.33 1.03 16 LS Contribution 402.67 15.07 6.07 6.07 Total: -1.00 -33.30 402.67 -7.91 -41.21 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -8.79 Total: 11.16 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 0.60 Total: 7.60 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.54 Total: -54.38 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.23 Total: -27.80 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.30 -7.91 -41.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150889050.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.420 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds