Wall clock time and date at job start Wed Apr 1 2020 00:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47107 * 2 1 4 4 O 1.21277 * 119.99895 * 0.02562 * 3 2 1 5 5 N 1.34775 * 120.00253 * 179.97438 * 3 2 1 6 6 C 1.46498 * 120.00251 * 174.67962 * 5 3 2 7 7 C 1.52996 * 109.52165 * 304.38103 * 6 5 3 8 8 C 1.53007 * 109.47269 * 304.20432 * 7 6 5 9 9 O 1.42900 * 109.46963 * 184.91492 * 8 7 6 10 10 C 1.42907 * 113.99764 * 179.97438 * 9 8 7 11 11 C 1.53115 * 109.52164 * 184.19183 * 6 5 3 12 12 C 1.53043 * 109.28050 * 297.74595 * 11 6 5 13 13 N 1.46839 * 109.52111 * 300.82457 * 12 11 6 14 14 C 1.46904 * 110.99802 * 185.83589 * 13 12 11 15 15 C 1.50705 * 109.47266 * 168.50045 * 14 13 12 16 16 O 1.21289 * 119.99641 * 3.96460 * 15 14 13 17 17 N 1.34772 * 119.99810 * 183.95751 * 15 14 13 18 18 C 1.37106 * 119.99812 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38941 * 119.99908 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00421 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47128 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47286 * 119.99826 * 22 20 18 25 25 H 1.48504 * 109.47320 * 240.00322 * 22 20 18 26 26 C 1.46848 * 111.20179 * 61.74059 * 13 12 11 27 27 C 1.53040 * 109.52254 * 298.25531 * 26 13 12 28 28 H 1.09000 * 109.47239 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47235 * 299.99985 * 1 2 3 30 30 H 1.09007 * 109.46908 * 59.99877 * 1 2 3 31 31 H 1.08997 * 109.47235 * 240.00015 * 2 1 3 32 32 H 1.08994 * 109.47023 * 119.99947 * 2 1 3 33 33 H 0.97010 * 119.99679 * 354.95382 * 5 3 2 34 34 H 1.08997 * 109.47209 * 64.19842 * 7 6 5 35 35 H 1.08996 * 109.47246 * 184.20404 * 7 6 5 36 36 H 1.09009 * 109.46530 * 304.90968 * 8 7 6 37 37 H 1.08998 * 109.47313 * 64.91026 * 8 7 6 38 38 H 1.08998 * 109.46689 * 299.99608 * 10 9 8 39 39 H 1.08999 * 109.46647 * 59.99589 * 10 9 8 40 40 H 1.08994 * 109.47121 * 179.97438 * 10 9 8 41 41 H 1.08997 * 109.50515 * 57.69002 * 11 6 5 42 42 H 1.09003 * 109.50358 * 177.80898 * 11 6 5 43 43 H 1.08998 * 109.46075 * 180.80491 * 12 11 6 44 44 H 1.09005 * 109.45544 * 60.83934 * 12 11 6 45 45 H 1.09002 * 109.47289 * 288.50141 * 14 13 12 46 46 H 1.09001 * 109.46845 * 48.50450 * 14 13 12 47 47 H 0.97001 * 120.00245 * 0.02562 * 17 15 14 48 48 H 0.97004 * 120.00893 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.46201 * 178.23947 * 26 13 12 50 50 H 1.09001 * 109.45213 * 58.26957 * 26 13 12 51 51 H 1.08999 * 109.50496 * 299.23923 * 27 26 13 52 52 H 1.08996 * 109.49883 * 179.11775 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8467 3.0430 -0.1171 7 6 3.2708 3.6842 -1.3812 8 6 3.6228 2.8228 -2.5958 9 8 3.1849 3.4783 -3.7877 10 6 3.4672 2.7539 -4.9867 11 6 5.3759 3.0372 -0.1959 12 6 5.9462 2.4497 1.0971 13 7 5.5001 3.2555 2.2408 14 6 6.1395 2.8041 3.4840 15 6 5.8859 3.8132 4.5743 16 8 5.1771 4.7735 4.3589 17 7 6.4467 3.6483 5.7887 18 6 6.2157 4.5660 6.7808 19 1 5.5846 5.4212 6.5889 20 6 6.7943 4.3964 8.0325 21 7 7.5625 3.3561 8.2658 22 14 6.4789 5.6463 9.3844 23 1 5.5861 6.7162 8.8709 24 1 5.8323 4.9735 10.5397 25 1 7.7679 6.2434 9.8171 26 6 4.0370 3.2372 2.3648 27 6 3.4097 3.8482 1.1097 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9871 0.9330 0.0748 34 1 2.1872 3.7578 -1.2899 35 1 3.6934 4.6809 -1.5080 36 1 4.7022 2.6768 -2.6371 37 1 3.1282 1.8552 -2.5106 38 1 4.5435 2.6069 -5.0774 39 1 2.9698 1.7848 -4.9513 40 1 3.1035 3.3175 -5.8458 41 1 5.6943 2.4298 -1.0430 42 1 5.7376 4.0576 -0.3225 43 1 7.0351 2.4574 1.0501 44 1 5.5951 1.4246 1.2160 45 1 5.7237 1.8402 3.7773 46 1 7.2130 2.7035 3.3246 47 1 7.0139 2.8804 5.9608 48 1 7.9668 3.2378 9.1396 49 1 3.7393 3.8169 3.2386 50 1 3.6951 2.2084 2.4778 51 1 3.7405 4.8814 1.0036 52 1 2.3235 3.8202 1.1954 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150889050.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:33 Heat of formation + Delta-G solvation = -144.287996 kcal Electronic energy + Delta-G solvation = -31494.454931 eV Core-core repulsion = 27299.809965 eV Total energy + Delta-G solvation = -4194.644967 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86543 -40.31193 -39.16625 -38.67335 -36.48595 -35.75458 -34.00569 -33.28596 -32.65543 -31.93313 -31.47333 -28.63183 -27.27986 -26.25240 -25.42247 -24.84225 -23.84325 -22.22441 -21.42275 -21.01759 -20.10407 -19.85738 -18.29176 -17.74277 -17.58943 -17.04528 -16.83103 -16.60122 -16.41119 -16.37212 -16.03383 -15.71795 -15.50327 -15.30316 -15.26840 -15.09179 -14.50835 -14.26945 -14.00312 -13.94417 -13.71741 -13.49674 -13.27708 -13.13133 -12.96245 -12.88267 -12.68293 -12.61519 -12.40495 -12.37410 -12.30396 -12.16590 -12.13127 -12.07835 -11.97258 -11.60752 -11.48343 -11.35551 -10.63956 -10.43841 -10.28002 -10.00897 -9.93020 -9.11479 -8.46218 -5.94178 1.35580 1.40681 1.54604 1.74291 2.07727 2.24182 2.28899 2.79733 2.80648 3.20818 3.40651 3.60910 3.76519 3.88830 3.96476 4.14227 4.19925 4.22720 4.23145 4.28100 4.34295 4.37756 4.45615 4.50210 4.50703 4.54740 4.55972 4.57405 4.63312 4.77237 4.84215 4.86978 4.93197 4.97033 4.97881 5.00509 5.07032 5.10265 5.18875 5.24478 5.30291 5.35375 5.41807 5.65197 5.92363 6.11348 6.26031 6.31676 6.62602 6.67208 7.14896 7.38746 7.58786 8.15728 8.71383 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017049 B = 0.002414 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.887826 B =11596.979411 C =12338.162021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.504 3.496 4 O -0.575 6.575 5 N -0.713 5.713 6 C 0.194 3.806 7 C -0.125 4.125 8 C 0.074 3.926 9 O -0.423 6.423 10 C 0.026 3.974 11 C -0.112 4.112 12 C 0.053 3.947 13 N -0.533 5.533 14 C 0.060 3.940 15 C 0.440 3.560 16 O -0.616 6.616 17 N -0.576 5.576 18 C -0.329 4.329 19 H 0.075 0.925 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.276 1.276 24 H -0.271 1.271 25 H -0.270 1.270 26 C 0.071 3.929 27 C -0.112 4.112 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.413 0.587 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.051 0.949 50 H 0.029 0.971 51 H 0.058 0.942 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 -13.635 -23.730 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.292 3.708 4 O -0.454 6.454 5 N -0.367 5.367 6 C 0.108 3.892 7 C -0.163 4.163 8 C -0.002 4.002 9 O -0.343 6.343 10 C -0.070 4.070 11 C -0.150 4.150 12 C -0.074 4.074 13 N -0.258 5.258 14 C -0.071 4.071 15 C 0.227 3.773 16 O -0.502 6.502 17 N -0.214 5.214 18 C -0.459 4.459 19 H 0.093 0.907 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.201 1.201 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.057 4.057 27 C -0.151 4.151 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.251 0.749 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.128 0.872 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.133 0.867 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.069 0.931 50 H 0.047 0.953 51 H 0.077 0.923 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.458 -11.753 -23.808 26.923 hybrid contribution 0.095 -0.682 1.424 1.582 sum -4.363 -12.434 -22.384 25.975 Atomic orbital electron populations 1.21513 0.93967 1.02357 1.01612 1.21699 0.97864 0.91944 1.06364 1.21408 0.82136 0.92742 0.74498 1.90666 1.56511 1.47857 1.50368 1.46106 1.07144 1.08652 1.74762 1.20102 0.94568 0.81803 0.92730 1.21785 1.02362 0.99658 0.92494 1.22490 0.99138 0.94957 0.83633 1.87855 1.82578 1.48335 1.15516 1.22909 1.00787 0.96853 0.86416 1.21949 0.91219 1.03955 0.97831 1.22270 1.01407 0.94653 0.89079 1.61445 1.06647 1.55012 1.02732 1.21705 1.01763 0.94757 0.88882 1.20923 0.83431 0.88873 0.84070 1.90476 1.42685 1.34875 1.82155 1.41939 1.44955 1.24565 1.09908 1.19637 1.29439 1.05311 0.91500 0.90695 1.25980 0.95876 0.99371 1.00048 1.69664 1.32392 1.29267 1.24806 0.84918 0.78287 0.77830 0.77583 1.20117 1.19595 1.19494 1.21895 0.87161 0.98194 0.98434 1.21795 1.00068 0.99333 0.93863 0.89856 0.94199 0.93453 0.86156 0.87225 0.74892 0.91853 0.90987 0.91111 0.93250 0.92634 0.93386 0.88956 0.87243 0.90086 0.88606 0.93004 0.91572 0.86716 0.76988 0.91346 0.93058 0.95279 0.92282 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.20 71.98 0.66 -1.47 16 2 C -0.14 -1.73 6.42 29.85 0.19 -1.54 16 3 C 0.50 10.34 6.82 87.66 0.60 10.94 16 4 O -0.57 -17.40 12.27 -3.02 -0.04 -17.44 16 5 N -0.71 -11.75 3.44 -422.58 -1.46 -13.21 16 6 C 0.19 4.10 0.35 3.68 0.00 4.10 16 7 C -0.12 -2.85 4.28 30.60 0.13 -2.72 16 8 C 0.07 1.31 5.50 71.98 0.40 1.70 16 9 O -0.42 -9.02 10.70 -148.98 -1.59 -10.61 16 10 C 0.03 0.34 11.01 113.37 1.25 1.59 16 11 C -0.11 -1.86 4.63 30.65 0.14 -1.72 16 12 C 0.05 1.00 5.30 86.33 0.46 1.46 16 13 N -0.53 -16.35 4.40 -900.90 -3.96 -20.31 16 14 C 0.06 2.00 5.45 85.56 0.47 2.46 16 15 C 0.44 21.02 7.53 87.66 0.66 21.68 16 16 O -0.62 -34.68 13.84 -3.06 -0.04 -34.72 16 17 N -0.58 -29.68 5.29 -306.99 -1.62 -31.30 16 18 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 21 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 22 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 C 0.07 2.40 4.96 86.33 0.43 2.83 16 27 C -0.11 -3.43 4.77 30.65 0.15 -3.29 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 30 H 0.05 0.86 8.10 -2.38 -0.02 0.84 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.41 4.06 7.35 -92.70 -0.68 3.38 16 34 H 0.06 1.87 6.19 -2.39 -0.01 1.86 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 0.92 6.39 -2.38 -0.02 0.90 16 37 H 0.05 0.81 7.31 -2.39 -0.02 0.79 16 38 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 1.05 6.58 -2.39 -0.02 1.04 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.54 8.00 -2.39 -0.02 1.52 16 44 H 0.05 0.75 6.94 -2.38 -0.02 0.74 16 45 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 46 H 0.11 3.22 7.96 -2.39 -0.02 3.21 16 47 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.05 2.28 5.78 -2.39 -0.01 2.27 16 50 H 0.03 0.90 7.69 -2.39 -0.02 0.88 16 51 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 52 H 0.06 2.17 6.28 -2.39 -0.02 2.15 16 Total: -1.00 -78.21 402.67 -0.08 -78.29 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.48 Total: 35.42 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 6.81 Total: 17.67 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -6.76 Total: -114.27 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -1.67 Total: -62.78 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -78.21 -0.08 -78.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150889050.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.999 kcal (2) G-P(sol) polarization free energy of solvation -78.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds