Wall clock time and date at job start Wed Apr 1 2020 00:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.46844 * 2 1 4 4 O 1.21273 * 120.00352 * 359.97438 * 3 2 1 5 5 N 1.34786 * 119.99658 * 180.02562 * 3 2 1 6 6 C 1.46494 * 119.99570 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47094 * 180.02562 * 6 5 3 8 8 O 1.21289 * 119.99743 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00581 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00523 * 184.90609 * 9 7 6 11 11 C 1.53002 * 109.44525 * 296.89908 * 10 9 7 12 12 C 1.52999 * 109.47468 * 303.92265 * 11 10 9 13 13 O 1.42897 * 109.47228 * 183.09612 * 12 11 10 14 14 C 1.42905 * 113.99680 * 180.02562 * 13 12 11 15 15 C 1.53044 * 109.46154 * 56.86320 * 10 9 7 16 16 C 1.53187 * 109.30894 * 58.65882 * 15 10 9 17 17 N 1.46923 * 108.77751 * 54.63864 * 16 15 10 18 18 C 1.36938 * 120.63108 * 126.37055 * 17 16 15 19 19 H 1.07995 * 119.99869 * 326.21479 * 18 17 16 20 20 C 1.38810 * 119.99705 * 146.49633 * 18 17 16 21 21 N 1.31625 * 119.99611 * 168.04415 * 20 18 17 22 22 Si 1.86802 * 120.00561 * 348.04083 * 20 18 17 23 23 H 1.48497 * 109.46854 * 85.68780 * 22 20 18 24 24 H 1.48494 * 109.47550 * 205.69586 * 22 20 18 25 25 H 1.48505 * 109.46526 * 325.69668 * 22 20 18 26 26 C 1.46926 * 118.73599 * 306.63530 * 17 16 15 27 27 C 1.52768 * 109.00544 * 53.31623 * 26 17 16 28 28 H 1.08994 * 109.47287 * 299.99921 * 1 2 3 29 29 H 1.08996 * 109.47185 * 60.00077 * 1 2 3 30 30 H 1.08998 * 109.47255 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47045 * 240.00285 * 2 1 3 32 32 H 1.08996 * 109.47185 * 119.99923 * 2 1 3 33 33 H 0.96996 * 120.00005 * 0.02562 * 5 3 2 34 34 H 1.08994 * 109.47785 * 59.99918 * 6 5 3 35 35 H 1.09009 * 109.47412 * 299.99505 * 6 5 3 36 36 H 0.97005 * 119.99572 * 4.90221 * 9 7 6 37 37 H 1.08995 * 109.47325 * 63.92960 * 11 10 9 38 38 H 1.09007 * 109.46984 * 183.92272 * 11 10 9 39 39 H 1.09003 * 109.46759 * 303.09699 * 12 11 10 40 40 H 1.09000 * 109.46815 * 63.08865 * 12 11 10 41 41 H 1.08999 * 109.46965 * 59.99754 * 14 13 12 42 42 H 1.08997 * 109.46810 * 179.97438 * 14 13 12 43 43 H 1.08996 * 109.46874 * 299.99673 * 14 13 12 44 44 H 1.09000 * 109.49306 * 298.70575 * 15 10 9 45 45 H 1.09002 * 109.49747 * 178.61110 * 15 10 9 46 46 H 1.09000 * 109.58623 * 294.84144 * 16 15 10 47 47 H 1.09006 * 109.58631 * 174.42754 * 16 15 10 48 48 H 0.97007 * 119.99969 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.58819 * 173.14357 * 26 17 16 50 50 H 1.08996 * 109.59306 * 293.57432 * 26 17 16 51 51 H 1.09003 * 109.56291 * 185.54937 * 27 26 17 52 52 H 1.08999 * 109.36115 * 65.49645 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0000 7 6 5.3526 3.0484 -0.0013 8 8 5.9591 1.9980 -0.0022 9 7 6.0265 4.2156 -0.0006 10 6 7.4874 4.2181 -0.1104 11 6 8.0907 3.5103 1.1045 12 6 7.5950 4.1840 2.3856 13 8 8.2143 3.5696 3.5173 14 6 7.8170 4.1276 4.7715 15 6 7.9040 3.4840 -1.3871 16 6 7.2699 4.1749 -2.5984 17 7 7.6333 5.5983 -2.5750 18 6 8.2166 6.1875 -3.6648 19 1 8.8894 5.6196 -4.2902 20 6 7.9476 7.5164 -3.9623 21 7 8.6759 8.1511 -4.8563 22 14 6.5520 8.4040 -3.0940 23 1 7.0419 8.9550 -1.8050 24 1 6.0608 9.5124 -3.9515 25 1 5.4438 7.4499 -2.8352 26 6 7.3644 6.3760 -1.3578 27 6 7.9924 5.6618 -0.1622 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9299 -0.0013 34 1 3.4828 3.5617 0.8904 35 1 3.4819 3.5627 -0.8895 36 1 5.5442 5.0540 0.0726 37 1 7.7867 2.4636 1.1033 38 1 9.1780 3.5728 1.0584 39 1 7.8512 5.2433 2.3616 40 1 6.5130 4.0736 2.4588 41 1 6.7398 4.0155 4.8940 42 1 8.3304 3.6068 5.5797 43 1 8.0776 5.1856 4.7972 44 1 7.5643 2.4494 -1.3391 45 1 8.9896 3.5069 -1.4821 46 1 6.1857 4.0736 -2.5508 47 1 7.6416 3.7179 -3.5157 48 1 8.4878 9.0797 -5.0645 49 1 7.7985 7.3709 -1.4565 50 1 6.2881 6.4580 -1.2068 51 1 7.7156 6.1773 0.7575 52 1 9.0772 5.6643 -0.2688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151027426.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:43 Heat of formation + Delta-G solvation = -123.667761 kcal Electronic energy + Delta-G solvation = -31906.596505 eV Core-core repulsion = 27712.845699 eV Total energy + Delta-G solvation = -4193.750806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90797 -40.70033 -39.20865 -38.67674 -36.42839 -35.44762 -33.97095 -33.70934 -33.17114 -32.10119 -30.81521 -29.05064 -27.64029 -26.33924 -24.97159 -24.59885 -24.16802 -22.30727 -21.89955 -21.38872 -20.28559 -19.07402 -18.68399 -17.68631 -17.40546 -17.23829 -17.16203 -16.96132 -16.80430 -16.25644 -16.14388 -15.78247 -15.58205 -15.37573 -15.16781 -15.08883 -14.58261 -14.41152 -14.27805 -14.11170 -14.01316 -13.62931 -13.37007 -13.34046 -13.15584 -13.10780 -12.70807 -12.62659 -12.49296 -12.32180 -12.22739 -12.06066 -12.02242 -12.01558 -11.64566 -11.44158 -11.35990 -11.00811 -10.84173 -10.61866 -10.47354 -10.25014 -10.04571 -8.82225 -8.15055 -5.57521 1.29535 1.42942 1.49694 1.52169 1.62898 1.79691 2.42187 2.46497 2.79040 3.12170 3.30744 3.49228 3.74027 3.83199 3.87195 4.03438 4.15630 4.23490 4.24816 4.29038 4.30881 4.32973 4.36402 4.44797 4.49336 4.51982 4.54977 4.61442 4.66676 4.75469 4.83006 4.90609 4.94887 4.98270 5.01208 5.03187 5.07821 5.10468 5.18276 5.21372 5.26581 5.32826 5.39389 5.58653 5.91810 6.15005 6.24358 6.47340 6.50548 6.93904 7.13255 7.20007 7.61125 8.03060 9.05010 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008273 B = 0.003854 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.508646 B = 7262.859444 C = 9480.948393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.508 3.492 4 O -0.586 6.586 5 N -0.714 5.714 6 C 0.099 3.901 7 C 0.518 3.482 8 O -0.551 6.551 9 N -0.708 5.708 10 C 0.203 3.797 11 C -0.117 4.117 12 C 0.069 3.931 13 O -0.417 6.417 14 C 0.026 3.974 15 C -0.133 4.133 16 C 0.156 3.844 17 N -0.616 5.616 18 C -0.251 4.251 19 H 0.041 0.959 20 C -0.037 4.037 21 N -0.965 5.965 22 Si 0.960 3.040 23 H -0.261 1.261 24 H -0.318 1.318 25 H -0.256 1.256 26 C 0.116 3.884 27 C -0.131 4.131 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.418 0.582 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.411 0.589 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.028 0.972 47 H 0.043 0.957 48 H 0.261 0.739 49 H 0.055 0.945 50 H 0.042 0.958 51 H 0.096 0.904 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 -13.672 19.323 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.297 3.703 4 O -0.466 6.466 5 N -0.369 5.369 6 C -0.028 4.028 7 C 0.304 3.696 8 O -0.430 6.430 9 N -0.360 5.360 10 C 0.118 3.882 11 C -0.156 4.156 12 C -0.007 4.007 13 O -0.337 6.337 14 C -0.070 4.070 15 C -0.172 4.172 16 C 0.031 3.969 17 N -0.341 5.341 18 C -0.380 4.380 19 H 0.059 0.941 20 C -0.231 4.231 21 N -0.611 5.611 22 Si 0.789 3.211 23 H -0.187 1.187 24 H -0.248 1.248 25 H -0.180 1.180 26 C -0.009 4.009 27 C -0.170 4.170 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.257 0.743 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.247 0.753 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.114 0.886 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.115 0.885 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.739 -13.786 19.204 25.965 hybrid contribution -0.186 1.264 -0.407 1.341 sum -10.925 -12.522 18.797 25.090 Atomic orbital electron populations 1.21539 0.93309 1.02684 1.01939 1.21693 0.98209 0.91178 1.06647 1.21505 0.81236 0.93233 0.74374 1.90694 1.56262 1.48126 1.51531 1.45783 1.07729 1.08219 1.75154 1.21057 0.90340 0.86174 1.05253 1.20510 0.89767 0.83927 0.75347 1.90634 1.70002 1.31869 1.50500 1.45999 1.07299 1.08938 1.73770 1.20009 0.78957 0.95383 0.93893 1.21787 1.01025 1.01074 0.91677 1.22519 0.96468 0.96580 0.85161 1.87837 1.69079 1.61450 1.15322 1.22905 1.00104 0.98946 0.85050 1.22238 1.00754 1.00056 0.94197 1.20897 0.96402 0.83192 0.96428 1.44365 1.71783 1.07048 1.10937 1.18782 1.19593 0.95445 1.04227 0.94106 1.26165 1.00518 0.98447 0.98009 1.69931 1.42098 1.11308 1.37787 0.85773 0.80710 0.77275 0.77389 1.18689 1.24755 1.18027 1.21428 0.97810 0.95236 0.86421 1.22236 1.01822 0.94062 0.98927 0.93267 0.93623 0.89631 0.86768 0.86380 0.74328 0.87383 0.88652 0.75265 0.90467 0.90811 0.92129 0.93118 0.93480 0.88594 0.93151 0.89896 0.91996 0.95369 0.93824 0.92981 0.92669 0.94063 0.88536 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.20 71.98 0.66 -1.19 16 2 C -0.14 -1.66 6.42 29.85 0.19 -1.47 16 3 C 0.51 10.26 7.83 87.66 0.69 10.94 16 4 O -0.59 -16.67 15.98 -3.01 -0.05 -16.72 16 5 N -0.71 -13.24 5.53 -466.80 -2.58 -15.82 16 6 C 0.10 1.93 6.16 85.63 0.53 2.45 16 7 C 0.52 11.47 7.21 87.66 0.63 12.10 16 8 O -0.55 -14.50 11.95 -3.06 -0.04 -14.54 16 9 N -0.71 -15.51 3.19 -422.80 -1.35 -16.86 16 10 C 0.20 5.24 0.35 3.63 0.00 5.24 16 11 C -0.12 -2.85 4.40 30.59 0.13 -2.71 16 12 C 0.07 1.45 5.49 71.98 0.40 1.84 16 13 O -0.42 -9.69 10.70 -148.98 -1.59 -11.28 16 14 C 0.03 0.41 11.01 113.37 1.25 1.66 16 15 C -0.13 -4.15 4.62 30.67 0.14 -4.01 16 16 C 0.16 5.89 6.26 86.36 0.54 6.43 16 17 N -0.62 -27.22 2.72 -699.93 -1.91 -29.12 16 18 C -0.25 -13.95 10.04 84.03 0.84 -13.11 16 19 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 20 C -0.04 -2.12 5.34 84.86 0.45 -1.66 16 21 N -0.97 -60.31 13.97 21.65 0.30 -60.01 16 22 Si 0.96 44.47 24.26 68.60 1.66 46.14 16 23 H -0.26 -10.92 6.44 99.48 0.64 -10.28 16 24 H -0.32 -15.40 7.11 99.48 0.71 -14.69 16 25 H -0.26 -11.05 6.64 99.48 0.66 -10.39 16 26 C 0.12 4.23 3.86 86.22 0.33 4.56 16 27 C -0.13 -3.64 4.70 30.53 0.14 -3.50 16 28 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 29 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.42 6.95 7.44 -92.71 -0.69 6.26 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.41 7.64 7.38 -92.70 -0.68 6.96 16 37 H 0.08 2.13 6.34 -2.39 -0.02 2.11 16 38 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.06 1.14 6.36 -2.39 -0.02 1.12 16 40 H 0.05 0.99 7.61 -2.39 -0.02 0.97 16 41 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 2.57 6.16 -2.39 -0.01 2.56 16 45 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.03 1.03 7.64 -2.39 -0.02 1.01 16 47 H 0.04 1.78 7.93 -2.38 -0.02 1.76 16 48 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 49 H 0.06 2.28 4.59 -2.39 -0.01 2.27 16 50 H 0.04 1.37 5.78 -2.39 -0.01 1.36 16 51 H 0.10 2.05 6.40 -2.39 -0.02 2.03 16 52 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -74.68 397.12 0.83 -73.85 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.55 Total: 26.79 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 6.93 Total: 17.58 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.53 Total: -121.81 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -1.68 Total: -42.54 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.66 Total: 46.14 kcal Total: -74.68 0.83 -73.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151027426.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.822 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds