Wall clock time and date at job start Wed Apr 1 2020 00:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.47140 * 2 1 4 4 O 1.21289 * 119.99931 * 359.97438 * 3 2 1 5 5 N 1.34766 * 120.00178 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00313 * 180.27331 * 5 3 2 7 7 C 1.52995 * 109.47487 * 179.72424 * 6 5 3 8 8 C 1.53004 * 109.52199 * 59.87441 * 7 6 5 9 9 O 1.42901 * 109.47315 * 300.00116 * 8 7 6 10 10 C 1.42897 * 114.00319 * 180.02562 * 9 8 7 11 11 C 1.53119 * 109.52434 * 299.68650 * 7 6 5 12 12 C 1.53039 * 109.27433 * 297.74547 * 11 7 6 13 13 N 1.46839 * 109.52853 * 300.82079 * 12 11 7 14 14 C 1.46898 * 111.00249 * 185.84255 * 13 12 11 15 15 C 1.50700 * 109.47077 * 169.43377 * 14 13 12 16 16 O 1.21293 * 120.00074 * 353.78006 * 15 14 13 17 17 N 1.34780 * 119.99985 * 173.78164 * 15 14 13 18 18 C 1.37096 * 119.99868 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00610 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99533 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00302 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99511 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47360 * 60.00271 * 22 20 18 24 24 H 1.48506 * 109.47003 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47396 * 300.00043 * 22 20 18 26 26 C 1.46848 * 111.19962 * 61.74011 * 13 12 11 27 27 C 1.53043 * 109.52318 * 298.26346 * 26 13 12 28 28 H 1.09005 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46972 * 300.00068 * 1 2 3 30 30 H 1.08997 * 109.47189 * 60.00435 * 1 2 3 31 31 H 1.09001 * 109.46972 * 239.99932 * 2 1 3 32 32 H 1.08997 * 109.46770 * 119.99901 * 2 1 3 33 33 H 0.97003 * 119.99791 * 0.02562 * 5 3 2 34 34 H 1.09004 * 109.46952 * 299.72612 * 6 5 3 35 35 H 1.08999 * 109.47250 * 59.72511 * 6 5 3 36 36 H 1.08997 * 109.47137 * 60.00189 * 8 7 6 37 37 H 1.08998 * 109.47137 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.47496 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.46618 * 300.00292 * 10 9 8 40 40 H 1.09001 * 109.47116 * 59.99352 * 10 9 8 41 41 H 1.09001 * 109.50274 * 57.68621 * 11 7 6 42 42 H 1.09000 * 109.50713 * 177.80717 * 11 7 6 43 43 H 1.09002 * 109.46088 * 180.80425 * 12 11 7 44 44 H 1.08998 * 109.46118 * 60.84204 * 12 11 7 45 45 H 1.09002 * 109.47011 * 289.43072 * 14 13 12 46 46 H 1.08993 * 109.47343 * 49.43085 * 14 13 12 47 47 H 0.96997 * 119.99730 * 0.02562 * 17 15 14 48 48 H 0.97004 * 119.99887 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.46593 * 178.24697 * 26 13 12 50 50 H 1.09003 * 109.46018 * 58.27404 * 26 13 12 51 51 H 1.09003 * 109.49925 * 299.23521 * 27 26 13 52 52 H 1.08994 * 109.50264 * 179.11958 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0055 7 6 5.3757 3.0483 0.0105 8 6 5.8910 2.3286 -1.2375 9 8 5.4153 0.9811 -1.2408 10 6 5.8423 0.2167 -2.3702 11 6 5.8834 2.3295 1.2636 12 6 5.4143 3.0891 2.5066 13 7 5.9302 4.4633 2.4659 14 6 5.6161 5.1806 3.7088 15 6 6.3738 6.4828 3.7424 16 8 7.1881 6.7332 2.8789 17 7 6.1466 7.3693 4.7318 18 6 6.8363 8.5538 4.7627 19 1 7.5613 8.7768 3.9939 20 6 6.6016 9.4679 5.7825 21 7 5.7191 9.1969 6.7177 22 14 7.5408 11.0821 5.8241 23 1 7.2619 11.8493 4.5836 24 1 7.1107 11.8747 7.0041 25 1 8.9968 10.8055 5.9182 26 6 5.4182 5.1883 1.2960 27 6 5.8874 4.4914 0.0168 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9298 -0.0013 34 1 3.4853 3.5650 -0.8840 35 1 3.4796 3.5592 0.8960 36 1 5.5311 2.8432 -2.1283 37 1 6.9810 2.3295 -1.2333 38 1 5.4393 -0.7935 -2.2986 39 1 5.4817 0.6875 -3.2848 40 1 6.9313 0.1735 -2.3889 41 1 5.4873 1.3143 1.2864 42 1 6.9727 2.2955 1.2474 43 1 5.7861 2.5879 3.4003 44 1 4.3248 3.1107 2.5293 45 1 4.5457 5.3818 3.7515 46 1 5.9054 4.5698 4.5639 47 1 5.4957 7.1689 5.4225 48 1 5.5556 9.8350 7.4298 49 1 5.7929 6.2117 1.3104 50 1 4.3286 5.2001 1.3244 51 1 6.9769 4.4914 -0.0189 52 1 5.4943 5.0208 -0.8511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162032108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:49 Heat of formation + Delta-G solvation = -118.508311 kcal Electronic energy + Delta-G solvation = -31378.729431 eV Core-core repulsion = 27185.202355 eV Total energy + Delta-G solvation = -4193.527076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62206 -39.20556 -38.35130 -37.40084 -35.12001 -33.85104 -33.27737 -32.76151 -31.19633 -30.76444 -28.95080 -27.28664 -26.52276 -25.56515 -24.02240 -23.84325 -23.06498 -21.58581 -20.28655 -19.14351 -18.75445 -17.82739 -17.23132 -16.58364 -16.27834 -16.09760 -15.89908 -15.69186 -15.63120 -14.98144 -14.82793 -14.56500 -14.25424 -14.13354 -13.88419 -13.66682 -13.46597 -13.31771 -13.11379 -12.78713 -12.41485 -12.35594 -12.23092 -12.04064 -11.94892 -11.81683 -11.74626 -11.47996 -11.36442 -11.29587 -11.06770 -10.99337 -10.63267 -10.42790 -10.37340 -10.34667 -10.18108 -9.97478 -9.81372 -9.43163 -8.98719 -8.38242 -7.93766 -7.78405 -6.38612 -3.79346 2.64266 3.05167 3.21857 3.27409 3.31616 3.49448 3.94820 4.01525 4.26412 4.44938 4.54772 4.69124 4.73145 4.88316 4.88804 4.97092 5.00682 5.06142 5.07020 5.22302 5.26423 5.27991 5.29367 5.35008 5.37636 5.41878 5.51815 5.56179 5.63779 5.67157 5.71988 5.73435 5.83969 5.88515 5.95225 6.00788 6.02845 6.07341 6.18607 6.30652 6.36703 6.44818 6.53926 6.76260 7.33193 7.45920 7.57690 7.61762 8.09489 8.28103 8.65450 9.21220 9.58307 10.10282 10.79165 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.002387 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.863818 B =11726.617291 C =12782.508753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.504 3.496 4 O -0.551 6.551 5 N -0.715 5.715 6 C 0.129 3.871 7 C -0.069 4.069 8 C 0.073 3.927 9 O -0.394 6.394 10 C 0.034 3.966 11 C -0.097 4.097 12 C 0.052 3.948 13 N -0.512 5.512 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.054 3.946 27 C -0.097 4.097 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.409 0.591 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.032 0.968 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.101 0.899 50 H 0.027 0.973 51 H 0.082 0.918 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.402 -21.700 -14.890 26.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.290 3.710 4 O -0.429 6.429 5 N -0.372 5.372 6 C 0.005 3.995 7 C -0.070 4.070 8 C -0.003 4.003 9 O -0.313 6.313 10 C -0.063 4.063 11 C -0.135 4.135 12 C -0.076 4.076 13 N -0.237 5.237 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.074 4.074 27 C -0.136 4.136 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.119 0.881 50 H 0.045 0.955 51 H 0.101 0.899 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.055 -20.855 -15.202 26.124 hybrid contribution -0.321 0.474 0.396 0.696 sum -4.376 -20.381 -14.806 25.568 Atomic orbital electron populations 1.21520 0.93229 1.01315 1.03349 1.21596 0.98441 0.94191 1.04063 1.20772 0.82433 0.91691 0.76113 1.90702 1.55617 1.46585 1.49995 1.46311 1.07051 1.09395 1.74447 1.21414 0.92378 0.83436 1.02251 1.20989 0.94392 0.96727 0.94846 1.22654 0.98234 0.81880 0.97534 1.87511 1.74623 1.23957 1.45212 1.22725 0.99153 0.95938 0.88489 1.21538 1.01727 0.97875 0.92364 1.22148 0.97157 0.89931 0.98403 1.61513 1.59489 1.00944 1.01731 1.21849 0.98021 0.95774 0.92917 1.19750 0.86974 0.85609 0.84705 1.90494 1.37729 1.78237 1.39635 1.41882 1.37772 1.16434 1.24143 1.19635 1.19583 0.93189 1.10377 0.87996 1.25255 0.97262 0.99909 0.95554 1.69605 1.33805 1.37273 1.13702 0.85930 0.79630 0.81108 0.77609 1.19940 1.21016 1.19924 1.22199 0.96243 0.99959 0.88974 1.21513 1.02337 0.91857 0.97866 0.92293 0.91985 0.92117 0.89234 0.89177 0.74907 0.91951 0.91035 0.93003 0.92459 0.89730 0.94157 0.93902 0.91242 0.90615 0.90787 0.95017 0.93638 0.89346 0.77519 0.91852 0.88115 0.95511 0.89929 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.20 37.16 0.34 -0.79 16 2 C -0.14 -1.12 6.42 -27.88 -0.18 -1.30 16 3 C 0.50 5.93 7.83 -10.99 -0.09 5.84 16 4 O -0.55 -8.88 15.98 5.55 0.09 -8.80 16 5 N -0.71 -7.43 4.60 -60.30 -0.28 -7.71 16 6 C 0.13 1.51 3.98 -4.05 -0.02 1.49 16 7 C -0.07 -0.71 0.51 -154.39 -0.08 -0.79 16 8 C 0.07 0.63 4.81 37.16 0.18 0.80 16 9 O -0.39 -3.06 6.80 -35.23 -0.24 -3.30 16 10 C 0.03 0.18 11.01 101.05 1.11 1.30 16 11 C -0.10 -1.04 4.57 -26.65 -0.12 -1.16 16 12 C 0.05 0.67 5.21 -3.84 -0.02 0.65 16 13 N -0.51 -8.36 4.35 -236.12 -1.03 -9.39 16 14 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 15 C 0.44 10.47 7.31 -10.98 -0.08 10.39 16 16 O -0.58 -15.35 14.28 5.55 0.08 -15.27 16 17 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 18 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.80 13.05 55.50 0.72 -24.07 16 22 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 26 C 0.05 0.85 4.87 -3.83 -0.02 0.83 16 27 C -0.10 -1.20 4.88 -26.65 -0.13 -1.33 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.41 3.61 4.69 -40.82 -0.19 3.42 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.99 4.92 -51.93 -0.26 0.73 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.07 0.65 6.53 -51.93 -0.34 0.31 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.90 8.01 -51.93 -0.42 0.49 16 44 H 0.03 0.42 6.51 -51.93 -0.34 0.08 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.46 7.98 -51.93 -0.41 1.04 16 47 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.10 1.96 6.05 -51.93 -0.31 1.64 16 50 H 0.03 0.42 6.51 -51.93 -0.34 0.08 16 51 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 52 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 403.06 15.07 6.07 6.07 Total: -1.00 -33.15 403.06 -7.80 -40.95 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -8.78 Total: 11.07 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 0.63 Total: 8.74 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.64 Total: -55.65 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.07 Total: -27.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.15 -7.80 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162032108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.559 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds