Wall clock time and date at job start Wed Apr 1 2020 00:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.47140 * 2 1 4 4 O 1.21289 * 119.99931 * 359.97438 * 3 2 1 5 5 N 1.34766 * 120.00178 * 180.02562 * 3 2 1 6 6 C 1.46497 * 120.00313 * 180.27331 * 5 3 2 7 7 C 1.52995 * 109.47487 * 179.72424 * 6 5 3 8 8 C 1.53004 * 109.52199 * 59.87441 * 7 6 5 9 9 O 1.42901 * 109.47315 * 300.00116 * 8 7 6 10 10 C 1.42897 * 114.00319 * 180.02562 * 9 8 7 11 11 C 1.53119 * 109.52434 * 299.68650 * 7 6 5 12 12 C 1.53039 * 109.27433 * 297.74547 * 11 7 6 13 13 N 1.46839 * 109.52853 * 300.82079 * 12 11 7 14 14 C 1.46898 * 111.00249 * 185.84255 * 13 12 11 15 15 C 1.50700 * 109.47077 * 169.43377 * 14 13 12 16 16 O 1.21293 * 120.00074 * 353.78006 * 15 14 13 17 17 N 1.34780 * 119.99985 * 173.78164 * 15 14 13 18 18 C 1.37096 * 119.99868 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00610 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99533 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00302 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99511 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47360 * 60.00271 * 22 20 18 24 24 H 1.48506 * 109.47003 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47396 * 300.00043 * 22 20 18 26 26 C 1.46848 * 111.19962 * 61.74011 * 13 12 11 27 27 C 1.53043 * 109.52318 * 298.26346 * 26 13 12 28 28 H 1.09005 * 109.46726 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46972 * 300.00068 * 1 2 3 30 30 H 1.08997 * 109.47189 * 60.00435 * 1 2 3 31 31 H 1.09001 * 109.46972 * 239.99932 * 2 1 3 32 32 H 1.08997 * 109.46770 * 119.99901 * 2 1 3 33 33 H 0.97003 * 119.99791 * 0.02562 * 5 3 2 34 34 H 1.09004 * 109.46952 * 299.72612 * 6 5 3 35 35 H 1.08999 * 109.47250 * 59.72511 * 6 5 3 36 36 H 1.08997 * 109.47137 * 60.00189 * 8 7 6 37 37 H 1.08998 * 109.47137 * 179.97438 * 8 7 6 38 38 H 1.08997 * 109.47496 * 180.02562 * 10 9 8 39 39 H 1.09007 * 109.46618 * 300.00292 * 10 9 8 40 40 H 1.09001 * 109.47116 * 59.99352 * 10 9 8 41 41 H 1.09001 * 109.50274 * 57.68621 * 11 7 6 42 42 H 1.09000 * 109.50713 * 177.80717 * 11 7 6 43 43 H 1.09002 * 109.46088 * 180.80425 * 12 11 7 44 44 H 1.08998 * 109.46118 * 60.84204 * 12 11 7 45 45 H 1.09002 * 109.47011 * 289.43072 * 14 13 12 46 46 H 1.08993 * 109.47343 * 49.43085 * 14 13 12 47 47 H 0.96997 * 119.99730 * 0.02562 * 17 15 14 48 48 H 0.97004 * 119.99887 * 179.97438 * 21 20 18 49 49 H 1.08996 * 109.46593 * 178.24697 * 26 13 12 50 50 H 1.09003 * 109.46018 * 58.27404 * 26 13 12 51 51 H 1.09003 * 109.49925 * 299.23521 * 27 26 13 52 52 H 1.08994 * 109.50264 * 179.11958 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0055 7 6 5.3757 3.0483 0.0105 8 6 5.8910 2.3286 -1.2375 9 8 5.4153 0.9811 -1.2408 10 6 5.8423 0.2167 -2.3702 11 6 5.8834 2.3295 1.2636 12 6 5.4143 3.0891 2.5066 13 7 5.9302 4.4633 2.4659 14 6 5.6161 5.1806 3.7088 15 6 6.3738 6.4828 3.7424 16 8 7.1881 6.7332 2.8789 17 7 6.1466 7.3693 4.7318 18 6 6.8363 8.5538 4.7627 19 1 7.5613 8.7768 3.9939 20 6 6.6016 9.4679 5.7825 21 7 5.7191 9.1969 6.7177 22 14 7.5408 11.0821 5.8241 23 1 7.2619 11.8493 4.5836 24 1 7.1107 11.8747 7.0041 25 1 8.9968 10.8055 5.9182 26 6 5.4182 5.1883 1.2960 27 6 5.8874 4.4914 0.0168 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9298 -0.0013 34 1 3.4853 3.5650 -0.8840 35 1 3.4796 3.5592 0.8960 36 1 5.5311 2.8432 -2.1283 37 1 6.9810 2.3295 -1.2333 38 1 5.4393 -0.7935 -2.2986 39 1 5.4817 0.6875 -3.2848 40 1 6.9313 0.1735 -2.3889 41 1 5.4873 1.3143 1.2864 42 1 6.9727 2.2955 1.2474 43 1 5.7861 2.5879 3.4003 44 1 4.3248 3.1107 2.5293 45 1 4.5457 5.3818 3.7515 46 1 5.9054 4.5698 4.5639 47 1 5.4957 7.1689 5.4225 48 1 5.5556 9.8350 7.4298 49 1 5.7929 6.2117 1.3104 50 1 4.3286 5.2001 1.3244 51 1 6.9769 4.4914 -0.0189 52 1 5.4943 5.0208 -0.8511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162032108.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:48 Heat of formation + Delta-G solvation = -143.266731 kcal Electronic energy + Delta-G solvation = -31379.803036 eV Core-core repulsion = 27185.202355 eV Total energy + Delta-G solvation = -4194.600681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60317 -40.40282 -39.74725 -38.40027 -36.31196 -35.74627 -34.31879 -33.50420 -33.23211 -31.83573 -30.11338 -28.06352 -27.67315 -26.68293 -25.53646 -24.63185 -24.10630 -22.70683 -21.17295 -21.00359 -19.87735 -19.68822 -18.11941 -17.73378 -17.22877 -17.00938 -16.92743 -16.74913 -16.50372 -16.38148 -16.25746 -15.93449 -15.44885 -15.29219 -15.27804 -14.94106 -14.66373 -14.22587 -14.16350 -13.97830 -13.66999 -13.45781 -13.20497 -13.10035 -13.00201 -12.94937 -12.82189 -12.69155 -12.60808 -12.42809 -12.21726 -12.14839 -12.11715 -11.99885 -11.58848 -11.57004 -11.35646 -11.27830 -10.80031 -10.54118 -10.25726 -9.99463 -9.94095 -9.15436 -8.45726 -5.94415 1.39637 1.40916 1.52126 1.75300 2.06483 2.26886 2.28699 2.75189 2.82815 3.20976 3.38237 3.59433 3.70555 3.81512 3.97326 4.09300 4.21812 4.26213 4.28038 4.29391 4.30789 4.37046 4.45716 4.49201 4.51793 4.57014 4.63855 4.67087 4.68868 4.70794 4.72823 4.81041 4.95305 4.97158 4.99033 5.02865 5.06706 5.09474 5.18149 5.20223 5.34464 5.35710 5.41096 5.63262 5.90035 6.09098 6.20523 6.25015 6.61457 6.78439 7.13568 7.43784 7.57460 8.13078 8.71688 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.002387 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.863818 B =11726.617291 C =12782.508753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.496 3.504 4 O -0.603 6.603 5 N -0.701 5.701 6 C 0.134 3.866 7 C -0.058 4.058 8 C 0.079 3.921 9 O -0.402 6.402 10 C 0.029 3.971 11 C -0.090 4.090 12 C 0.052 3.948 13 N -0.524 5.524 14 C 0.056 3.944 15 C 0.443 3.557 16 O -0.610 6.610 17 N -0.577 5.577 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.015 4.015 21 N -0.923 5.923 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.057 3.943 27 C -0.091 4.091 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.420 0.580 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.030 0.970 45 H 0.056 0.944 46 H 0.111 0.889 47 H 0.394 0.606 48 H 0.277 0.723 49 H 0.058 0.942 50 H 0.025 0.975 51 H 0.077 0.923 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.038 -24.258 -15.502 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C 0.284 3.716 4 O -0.485 6.485 5 N -0.359 5.359 6 C 0.010 3.990 7 C -0.059 4.059 8 C 0.003 3.997 9 O -0.321 6.321 10 C -0.067 4.067 11 C -0.128 4.128 12 C -0.075 4.075 13 N -0.249 5.249 14 C -0.075 4.075 15 C 0.231 3.769 16 O -0.496 6.496 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.098 0.902 20 C -0.215 4.215 21 N -0.564 5.564 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.071 4.071 27 C -0.129 4.129 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.129 0.871 47 H 0.228 0.772 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.043 0.957 51 H 0.095 0.905 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.678 -23.468 -15.816 28.538 hybrid contribution -0.452 1.213 0.541 1.403 sum -4.129 -22.254 -15.275 27.306 Atomic orbital electron populations 1.21533 0.93837 1.02512 1.01599 1.21658 0.97834 0.91546 1.06464 1.21583 0.82242 0.92952 0.74836 1.90684 1.56853 1.48518 1.52414 1.46235 1.07034 1.09061 1.73540 1.21234 0.93137 0.84068 1.00584 1.20822 0.93294 0.95574 0.96171 1.22492 0.98571 0.82429 0.96218 1.87450 1.74856 1.23389 1.46390 1.22900 0.99731 0.96390 0.87657 1.21520 1.01719 0.98455 0.91116 1.22257 0.97057 0.87937 1.00279 1.61534 1.60191 1.02348 1.00840 1.21733 0.97583 0.93312 0.94918 1.20705 0.86287 0.86749 0.83191 1.90466 1.39234 1.79294 1.40584 1.41963 1.38066 1.16475 1.24937 1.19622 1.20546 0.94997 1.10855 0.90187 1.26056 0.97886 1.02774 0.94760 1.69675 1.34395 1.38376 1.13952 0.84989 0.78347 0.77050 0.77953 1.19728 1.19585 1.19566 1.22076 0.95951 0.98334 0.90747 1.21429 1.01937 0.93272 0.96304 0.89510 0.93973 0.93732 0.86486 0.86765 0.73630 0.93037 0.93457 0.92668 0.91618 0.87887 0.94034 0.93313 0.89106 0.90621 0.89555 0.95218 0.92608 0.87124 0.77205 0.91364 0.92347 0.95673 0.90466 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.20 71.98 0.66 -1.40 16 2 C -0.14 -1.75 6.42 29.85 0.19 -1.55 16 3 C 0.50 11.07 7.83 87.66 0.69 11.75 16 4 O -0.60 -19.72 15.98 -3.06 -0.05 -19.77 16 5 N -0.70 -13.32 4.60 -463.08 -2.13 -15.45 16 6 C 0.13 3.06 3.98 86.38 0.34 3.40 16 7 C -0.06 -1.12 0.51 -52.10 -0.03 -1.15 16 8 C 0.08 1.17 4.81 71.98 0.35 1.51 16 9 O -0.40 -4.96 6.80 -148.98 -1.01 -5.98 16 10 C 0.03 0.22 11.01 113.37 1.25 1.47 16 11 C -0.09 -1.74 4.57 30.65 0.14 -1.60 16 12 C 0.05 1.26 5.21 86.33 0.45 1.71 16 13 N -0.52 -17.09 4.35 -900.94 -3.92 -21.00 16 14 C 0.06 2.03 5.45 85.56 0.47 2.50 16 15 C 0.44 21.56 7.31 87.66 0.64 22.20 16 16 O -0.61 -33.78 14.28 -3.07 -0.04 -33.83 16 17 N -0.58 -30.36 5.29 -306.98 -1.62 -31.98 16 18 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 19 H 0.08 4.88 7.16 -2.91 -0.02 4.85 16 20 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 21 N -0.92 -50.94 13.05 21.66 0.28 -50.65 16 22 Si 0.99 43.64 29.55 68.60 2.03 45.66 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 C 0.06 1.86 4.87 86.33 0.42 2.28 16 27 C -0.09 -2.24 4.88 30.65 0.15 -2.09 16 28 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 30 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.42 6.11 4.69 -92.71 -0.44 5.67 16 34 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.05 1.32 4.92 -2.39 -0.01 1.31 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.04 0.32 8.14 -2.38 -0.02 0.30 16 40 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.09 1.39 6.53 -2.39 -0.02 1.38 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.90 8.01 -2.39 -0.02 1.88 16 44 H 0.03 0.75 6.51 -2.39 -0.02 0.74 16 45 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 46 H 0.11 3.53 7.98 -2.39 -0.02 3.52 16 47 H 0.39 19.91 7.90 -92.71 -0.73 19.18 16 48 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 49 H 0.06 2.41 6.05 -2.39 -0.01 2.39 16 50 H 0.03 0.82 6.51 -2.39 -0.02 0.80 16 51 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -74.95 403.06 0.29 -74.65 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.24 Total: 37.92 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 7.00 Total: 20.42 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -7.39 Total: -119.09 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -1.11 Total: -59.57 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -74.95 0.29 -74.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162032108.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.615 kcal (2) G-P(sol) polarization free energy of solvation -74.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds