Wall clock time and date at job start Wed Apr 1 2020 00:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47374 * 2 1 4 4 O 1.42901 * 109.47448 * 120.00489 * 2 1 3 5 5 C 1.42903 * 114.00396 * 89.99221 * 4 2 1 6 6 C 1.50699 * 109.47323 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99681 * 0.28404 * 6 5 4 8 8 N 1.34776 * 119.99702 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99572 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47186 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47316 * 175.39957 * 10 9 8 12 12 C 1.53007 * 115.54772 * 279.48297 * 11 10 9 13 13 N 1.46900 * 109.47502 * 296.02527 * 12 11 10 14 14 C 1.46890 * 111.00225 * 185.24258 * 13 12 11 15 15 C 1.50702 * 109.47415 * 179.97438 * 14 13 12 16 16 O 1.21291 * 119.99598 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00293 * 179.97438 * 15 14 13 18 18 C 1.37098 * 119.99820 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00274 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99526 * 180.02562 * 18 17 15 21 21 N 1.31418 * 119.99695 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00206 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47121 * 89.99971 * 22 20 18 24 24 H 1.48501 * 109.46908 * 209.99870 * 22 20 18 25 25 H 1.48493 * 109.47111 * 329.99676 * 22 20 18 26 26 C 1.53000 * 117.50236 * 133.78182 * 11 10 9 27 27 C 1.52998 * 117.50068 * 65.15199 * 11 10 9 28 28 H 1.09004 * 109.47002 * 59.99551 * 1 2 3 29 29 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46710 * 299.99588 * 1 2 3 31 31 H 1.09003 * 109.47039 * 239.99978 * 2 1 3 32 32 H 1.09007 * 109.47084 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47415 * 300.00006 * 3 2 1 34 34 H 1.09003 * 109.46865 * 60.00507 * 3 2 1 35 35 H 1.09001 * 109.46868 * 60.00313 * 5 4 2 36 36 H 1.09005 * 109.47130 * 300.00822 * 5 4 2 37 37 H 0.96997 * 120.00481 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.47881 * 300.00444 * 9 8 6 39 39 H 1.09002 * 109.46927 * 60.01155 * 9 8 6 40 40 H 1.09003 * 109.47161 * 295.40180 * 10 9 8 41 41 H 1.09003 * 109.46908 * 55.39702 * 10 9 8 42 42 H 1.09005 * 109.46697 * 56.02612 * 12 11 10 43 43 H 1.09001 * 109.47012 * 176.02220 * 12 11 10 44 44 H 1.00901 * 110.99792 * 61.28383 * 13 12 11 45 45 H 1.09000 * 109.47448 * 300.00315 * 14 13 12 46 46 H 1.09002 * 109.47322 * 59.99868 * 14 13 12 47 47 H 0.96999 * 119.99796 * 0.02562 * 17 15 14 48 48 H 0.96995 * 119.99588 * 180.02562 * 21 20 18 49 49 H 1.09006 * 117.49510 * 359.97438 * 26 11 10 50 50 H 1.08992 * 117.50453 * 145.02124 * 26 11 10 51 51 H 1.09000 * 117.50013 * 214.97991 * 27 11 10 52 52 H 1.08991 * 117.50029 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9886 6 6 2.7003 -2.6836 2.2748 7 8 2.8690 -1.9822 3.2496 8 7 2.9542 -4.0054 2.3434 9 6 3.4411 -4.5937 3.5937 10 6 3.6483 -6.0976 3.4030 11 6 4.2644 -6.6924 4.6708 12 6 5.7761 -6.5085 4.8187 13 7 6.4650 -7.2286 3.7394 14 6 7.9220 -7.1784 3.9193 15 6 8.5930 -7.9264 2.7962 16 8 7.9232 -8.4495 1.9308 17 7 9.9372 -8.0133 2.7529 18 6 10.5475 -8.6934 1.7308 19 1 9.9512 -9.1591 0.9602 20 6 11.9334 -8.7833 1.6865 21 7 12.5185 -9.4357 0.7071 22 14 12.9649 -7.9784 3.0197 23 1 13.1856 -8.9444 4.1257 24 1 14.2743 -7.5678 2.4523 25 1 12.2546 -6.7830 3.5410 26 6 3.6532 -7.9857 5.2136 27 6 3.4209 -6.6631 5.9470 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8901 35 1 2.9319 -2.2468 0.1985 36 1 1.2537 -2.5434 0.7124 37 1 2.8154 -4.5671 1.5649 38 1 4.3876 -4.1291 3.8696 39 1 2.7094 -4.4249 4.3838 40 1 2.6880 -6.5748 3.2073 41 1 4.3172 -6.2681 2.5594 42 1 6.0204 -5.4477 4.7615 43 1 6.0977 -6.9039 5.7823 44 1 6.1995 -6.8661 2.8360 45 1 8.2533 -6.1399 3.9136 46 1 8.1867 -7.6389 4.8712 47 1 10.4728 -7.5946 3.4448 48 1 13.4859 -9.4988 0.6763 49 1 2.8119 -8.4127 4.6677 50 1 4.3280 -8.7059 5.6762 51 1 3.9430 -6.5132 6.8920 52 1 2.4270 -6.2204 5.8833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163699277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:59 Heat of formation + Delta-G solvation = -98.201308 kcal Electronic energy + Delta-G solvation = -29001.551280 eV Core-core repulsion = 24808.904782 eV Total energy + Delta-G solvation = -4192.646498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.14828 -39.07428 -38.40127 -38.13773 -35.20108 -34.70682 -33.79118 -33.20494 -31.66233 -30.84285 -28.39161 -27.87747 -27.45345 -25.14908 -23.72253 -23.20967 -22.23339 -21.75830 -21.00326 -19.49393 -19.01899 -18.28274 -17.46221 -17.39376 -16.56900 -16.31581 -16.06404 -15.71091 -15.38859 -15.12859 -14.99878 -14.81140 -14.55576 -14.12071 -13.94435 -13.66944 -13.44802 -13.27811 -13.17251 -12.95003 -12.81206 -12.61739 -12.43334 -12.40657 -12.26056 -11.95161 -11.89809 -11.75360 -11.72662 -11.50399 -11.18645 -11.16431 -11.09768 -10.59980 -10.33030 -10.11041 -10.06550 -9.98077 -9.85832 -9.57627 -9.36419 -8.58660 -8.19324 -8.10741 -6.31765 -3.83113 2.33411 2.45532 3.02443 3.06833 3.14882 3.50855 3.59859 3.74128 4.09561 4.19854 4.31215 4.49778 4.52717 4.55846 4.62006 4.68321 4.70990 4.73489 4.79651 4.81492 4.94756 5.11044 5.13796 5.15806 5.22453 5.26621 5.34394 5.35674 5.40972 5.49982 5.53924 5.57292 5.66260 5.73291 5.78798 5.80562 5.83397 5.85171 5.91566 5.94302 6.04473 6.08603 6.14852 6.68148 7.09893 7.17507 7.56994 7.58797 7.93224 8.13906 8.59378 8.94374 9.42034 9.82363 10.81354 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.001926 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.928430 B =14531.691536 C =16518.448755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.358 6.358 5 C 0.043 3.957 6 C 0.512 3.488 7 O -0.519 6.519 8 N -0.730 5.730 9 C 0.124 3.876 10 C -0.094 4.094 11 C -0.116 4.116 12 C 0.094 3.906 13 N -0.663 5.663 14 C 0.047 3.953 15 C 0.451 3.549 16 O -0.565 6.565 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.153 4.153 27 C -0.176 4.176 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.348 0.652 45 H 0.044 0.956 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.094 0.906 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.340 15.599 3.936 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.276 6.276 5 C -0.037 4.037 6 C 0.297 3.703 7 O -0.394 6.394 8 N -0.384 5.384 9 C 0.001 3.999 10 C -0.132 4.132 11 C -0.117 4.117 12 C -0.035 4.035 13 N -0.296 5.296 14 C -0.086 4.086 15 C 0.236 3.764 16 O -0.447 6.447 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.190 4.190 27 C -0.214 4.214 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.168 0.832 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.110 0.890 50 H 0.117 0.883 51 H 0.112 0.888 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.484 15.184 4.427 28.313 hybrid contribution 1.132 0.992 0.089 1.508 sum -22.352 16.176 4.516 27.959 Atomic orbital electron populations 1.22316 0.95800 1.02396 1.02854 1.22192 0.93791 0.94129 0.87825 1.21857 1.02074 0.94146 1.02655 1.88069 1.86618 1.17617 1.35335 1.22236 1.01255 0.84314 0.95871 1.20255 0.78053 0.82143 0.89821 1.90742 1.50581 1.60521 1.37529 1.45920 1.68680 1.08223 1.15601 1.21376 0.99970 0.92967 0.85636 1.21303 1.01394 0.93162 0.97371 1.21182 0.93722 1.02587 0.94165 1.21458 0.90517 0.95708 0.95808 1.60005 1.04780 1.59207 1.05628 1.21710 0.88737 0.98702 0.99414 1.19706 0.82525 0.85829 0.88315 1.90557 1.63416 1.49993 1.40706 1.42211 1.05533 1.49932 1.25366 1.19428 0.90748 1.29385 1.03799 0.86291 1.25043 0.96471 0.97415 0.97256 1.69624 1.10521 1.40998 1.31009 0.86666 0.80901 0.79707 0.82083 1.19594 1.20191 1.19535 1.22958 1.02486 0.90648 1.02876 1.23048 1.00770 1.01968 0.95572 0.91437 0.92512 0.91566 0.91920 0.91781 0.91066 0.91594 0.90092 0.90342 0.76396 0.91320 0.91294 0.90932 0.90155 0.95025 0.90835 0.83159 0.93851 0.89498 0.79688 0.91623 0.88964 0.88331 0.88767 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 9.53 37.16 0.35 -0.66 16 2 C 0.08 0.55 3.34 -26.73 -0.09 0.46 16 3 C -0.15 -0.96 9.56 37.16 0.36 -0.61 16 4 O -0.36 -3.71 9.52 -55.14 -0.52 -4.23 16 5 C 0.04 0.34 6.23 36.01 0.22 0.56 16 6 C 0.51 5.55 7.91 -10.99 -0.09 5.46 16 7 O -0.52 -8.13 16.50 -14.35 -0.24 -8.37 16 8 N -0.73 -6.05 5.56 -60.29 -0.33 -6.38 16 9 C 0.12 1.14 5.51 -4.04 -0.02 1.12 16 10 C -0.09 -0.81 5.24 -26.73 -0.14 -0.95 16 11 C -0.12 -1.12 1.73 -154.51 -0.27 -1.39 16 12 C 0.09 1.08 5.55 -3.82 -0.02 1.06 16 13 N -0.66 -9.91 6.09 -115.06 -0.70 -10.61 16 14 C 0.05 0.77 6.16 -4.98 -0.03 0.74 16 15 C 0.45 10.16 7.82 -10.99 -0.09 10.07 16 16 O -0.56 -14.99 15.78 5.55 0.09 -14.90 16 17 N -0.59 -14.06 5.09 -10.96 -0.06 -14.12 16 18 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 21 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 22 Si 0.88 19.40 27.74 -169.99 -4.71 14.69 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.43 6.52 56.52 0.37 -5.07 16 26 C -0.15 -1.46 9.90 -26.73 -0.26 -1.73 16 27 C -0.18 -1.48 9.58 -26.73 -0.26 -1.74 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.34 7.79 -51.93 -0.40 -0.07 16 32 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 37 H 0.40 2.17 8.47 -40.82 -0.35 1.82 16 38 H 0.07 0.75 7.69 -51.93 -0.40 0.35 16 39 H 0.07 0.67 7.82 -51.93 -0.41 0.26 16 40 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 41 H 0.08 0.76 6.73 -51.93 -0.35 0.41 16 42 H 0.03 0.35 7.69 -51.93 -0.40 -0.05 16 43 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 44 H 0.35 5.37 7.06 -39.29 -0.28 5.09 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.37 7.75 5.76 -40.82 -0.24 7.52 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.09 0.82 8.08 -51.93 -0.42 0.40 16 50 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 52 H 0.09 0.71 7.99 -51.93 -0.41 0.30 16 LS Contribution 428.59 15.07 6.46 6.46 Total: -1.00 -36.25 428.59 -8.91 -45.16 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -9.08 Total: 12.59 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.58 Total: 4.66 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.32 Total: -56.06 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.67 Total: -27.50 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -36.25 -8.91 -45.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163699277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.041 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds