Wall clock time and date at job start Wed Apr 1 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47380 * 2 1 4 4 C 1.53000 * 109.46724 * 240.00125 * 2 1 3 5 5 C 1.53002 * 109.47081 * 174.99816 * 4 2 1 6 6 C 1.53000 * 109.47081 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46794 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.46662 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99686 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47072 * 179.97438 * 9 8 7 11 11 O 1.21291 * 119.99851 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00084 * 180.02562 * 10 9 8 13 13 C 1.37103 * 120.00301 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99547 * 0.02562 * 13 12 10 15 15 C 1.38954 * 120.00032 * 179.97438 * 13 12 10 16 16 N 1.31409 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99784 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47199 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47365 * 120.00131 * 17 15 13 20 20 H 1.48497 * 109.47132 * 240.00388 * 17 15 13 21 21 N 1.46496 * 109.46862 * 120.00795 * 2 1 3 22 22 C 1.34777 * 119.99785 * 274.99130 * 21 2 1 23 23 O 1.21287 * 120.00138 * 0.02562 * 22 21 2 24 24 C 1.50697 * 120.00408 * 180.02562 * 22 21 2 25 25 H 1.09003 * 110.27351 * 302.91348 * 24 22 21 26 26 C 1.54947 * 110.30950 * 64.99833 * 24 22 21 27 27 C 1.55306 * 100.97824 * 155.34179 * 26 24 22 28 28 C 1.54429 * 102.23000 * 325.92130 * 27 26 24 29 29 O 1.43234 * 107.60919 * 21.29662 * 28 27 26 30 30 H 1.09010 * 109.47006 * 299.99778 * 1 2 3 31 31 H 1.09007 * 109.47314 * 59.99454 * 1 2 3 32 32 H 1.08994 * 109.47822 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47552 * 295.00392 * 4 2 1 34 34 H 1.09000 * 109.46975 * 55.00350 * 4 2 1 35 35 H 1.08995 * 109.47398 * 300.00670 * 5 4 2 36 36 H 1.09000 * 109.46780 * 60.00415 * 5 4 2 37 37 H 1.09001 * 109.47071 * 300.00061 * 6 5 4 38 38 H 1.09000 * 109.46975 * 60.00534 * 6 5 4 39 39 H 1.09001 * 109.46978 * 299.99649 * 7 6 5 40 40 H 1.09000 * 109.47307 * 60.00268 * 7 6 5 41 41 H 1.00900 * 111.00041 * 303.95087 * 8 7 6 42 42 H 1.08997 * 109.47504 * 299.99861 * 9 8 7 43 43 H 1.09008 * 109.47055 * 60.00276 * 9 8 7 44 44 H 0.97007 * 119.99931 * 0.02562 * 12 10 9 45 45 H 0.97000 * 119.99823 * 180.02562 * 16 15 13 46 46 H 0.97002 * 120.00492 * 95.00100 * 21 2 1 47 47 H 1.09002 * 111.12777 * 273.28448 * 26 24 22 48 48 H 1.08995 * 111.12300 * 37.40341 * 26 24 22 49 49 H 1.09001 * 110.84858 * 84.08537 * 27 26 24 50 50 H 1.09006 * 110.84549 * 207.69503 * 27 26 24 51 51 H 1.09007 * 109.79290 * 261.79697 * 28 27 26 52 52 H 1.08999 * 109.92783 * 140.87682 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0747 -1.3351 -2.5628 7 6 5.5996 -1.2276 -2.6269 8 7 6.0891 -1.9201 -3.8264 9 6 7.5527 -1.8371 -3.9217 10 6 8.0171 -2.5574 -5.1613 11 8 7.2083 -3.0874 -5.8935 12 7 9.3310 -2.6128 -5.4561 13 6 9.7535 -3.2677 -6.5841 14 1 9.0333 -3.7389 -7.2365 15 6 11.1081 -3.3242 -6.8884 16 7 11.9843 -2.7504 -6.0948 17 14 11.6836 -4.2160 -8.4256 18 1 10.5091 -4.7729 -9.1438 19 1 12.4002 -3.2635 -9.3114 20 1 12.5990 -5.3210 -8.0434 21 7 2.0182 -0.6908 1.1961 22 6 2.1471 -0.0185 2.3571 23 8 1.8583 1.1582 2.4117 24 6 2.6499 -0.7288 3.5874 25 1 2.0155 -1.5856 3.8146 26 6 4.1166 -1.1848 3.3834 27 6 4.6091 -1.2633 4.8542 28 6 3.8302 -0.1092 5.5221 29 8 2.6896 0.1746 4.7035 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7515 -1.7714 -1.2057 34 1 1.6052 -0.2616 -2.1370 35 1 3.8531 0.4369 -1.3574 36 1 3.9993 -1.0729 -0.4262 37 1 3.7863 -2.3853 -2.5187 38 1 3.6401 -0.8759 -3.4507 39 1 5.8883 -0.1775 -2.6709 40 1 6.0339 -1.6871 -1.7390 41 1 5.7794 -2.8803 -3.8414 42 1 7.8546 -0.7911 -3.9744 43 1 8.0009 -2.3009 -3.0430 44 1 9.9778 -2.1892 -4.8703 45 1 12.9299 -2.7896 -6.3074 46 1 2.2489 -1.6319 1.1525 47 1 4.1610 -2.1615 2.9015 48 1 4.6831 -0.4446 2.8185 49 1 4.3429 -2.2209 5.3019 50 1 5.6840 -1.0920 4.9130 51 1 4.4655 0.7740 5.5902 52 1 3.5050 -0.4083 6.5186 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168961100.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:55 Heat of formation + Delta-G solvation = -167.715032 kcal Electronic energy + Delta-G solvation = -28894.903032 eV Core-core repulsion = 24699.242192 eV Total energy + Delta-G solvation = -4195.660839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.39321 -40.16568 -39.66660 -37.99590 -36.92902 -35.91233 -34.40653 -33.33313 -33.20128 -32.28028 -30.29552 -29.61446 -27.63729 -25.87681 -24.95315 -23.62443 -22.63122 -22.08156 -21.80762 -21.44711 -21.01932 -19.90286 -18.71513 -17.85332 -17.70041 -17.31704 -17.10180 -16.52797 -16.43658 -16.03174 -15.96678 -15.90022 -15.52209 -15.21060 -15.11412 -14.79838 -14.63447 -14.34331 -14.24053 -13.85789 -13.63366 -13.47685 -13.33929 -13.14990 -12.97715 -12.94006 -12.78680 -12.74576 -12.41568 -12.37340 -12.30003 -12.11745 -12.09204 -11.88472 -11.82425 -11.54465 -11.51970 -11.40089 -11.04175 -10.43175 -10.35488 -10.10831 -10.02286 -9.30236 -8.47348 -5.96266 1.36797 1.42254 1.54160 1.56579 1.93143 2.04219 2.29189 2.93220 2.97142 3.19895 3.42737 3.50698 3.67003 3.80147 3.90843 4.00946 4.08518 4.12616 4.13987 4.24066 4.30528 4.33903 4.37489 4.46173 4.53929 4.57074 4.63203 4.74713 4.75149 4.78857 4.79560 4.85842 4.88682 4.95419 4.96488 5.00689 5.08898 5.18010 5.21145 5.30157 5.39916 5.40796 5.51446 5.57046 5.89423 5.90814 6.12895 6.45314 6.55691 6.59410 7.11960 7.23870 7.55401 8.10559 8.70281 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.001545 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.450477 B =18121.011518 C =19628.869636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.117 4.117 5 C -0.110 4.110 6 C -0.109 4.109 7 C 0.059 3.941 8 N -0.687 5.687 9 C 0.065 3.935 10 C 0.437 3.563 11 O -0.623 6.623 12 N -0.574 5.574 13 C -0.334 4.334 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.270 1.270 21 N -0.704 5.704 22 C 0.509 3.491 23 O -0.578 6.578 24 C 0.060 3.940 25 H 0.123 0.877 26 C -0.141 4.141 27 C -0.147 4.147 28 C 0.038 3.962 29 O -0.395 6.395 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.345 0.655 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.416 0.584 47 H 0.123 0.877 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.065 0.935 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.657 1.087 23.505 29.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.069 4.069 8 N -0.320 5.320 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.211 5.211 13 C -0.464 4.464 14 H 0.097 0.903 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.198 1.198 19 H -0.197 1.197 20 H -0.195 1.195 21 N -0.358 5.358 22 C 0.295 3.705 23 O -0.457 6.457 24 C -0.001 4.001 25 H 0.140 0.860 26 C -0.179 4.179 27 C -0.184 4.184 28 C -0.038 4.038 29 O -0.314 6.314 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.163 0.837 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.254 0.746 47 H 0.141 0.859 48 H 0.090 0.910 49 H 0.119 0.881 50 H 0.115 0.885 51 H 0.083 0.917 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.438 2.297 22.678 29.318 hybrid contribution 1.283 -0.866 0.166 1.556 sum -17.155 1.431 22.843 28.604 Atomic orbital electron populations 1.22136 0.94820 1.02923 1.01924 1.20976 0.94211 0.96740 0.84235 0.91880 1.21838 0.95332 1.02008 0.96261 1.21478 0.95418 1.00394 0.97506 1.21483 0.93356 1.01355 0.98487 1.22083 0.96301 0.98932 0.89609 1.60076 1.08475 1.21851 1.41587 1.21528 0.89884 1.01156 0.94198 1.20911 0.82341 0.84825 0.89497 1.90485 1.54186 1.52124 1.54205 1.41953 1.06323 1.49235 1.23573 1.19722 0.92376 1.32007 1.02301 0.90288 1.26062 0.95162 0.98103 1.02017 1.69677 1.02937 1.44529 1.38996 0.84851 0.78047 0.78001 0.77309 1.19769 1.19667 1.19497 1.45910 1.66614 1.14685 1.08576 1.20992 0.77058 0.86956 0.85472 1.90706 1.51154 1.18330 1.85540 1.23070 0.99771 0.92224 0.85002 0.85992 1.23294 0.91771 1.04202 0.98643 1.23152 1.01911 0.99439 0.93913 1.23424 0.86782 0.98774 0.94851 1.88499 1.47467 1.57936 1.37481 0.94521 0.90632 0.90818 0.89371 0.89757 0.92766 0.91012 0.91262 0.92118 0.91367 0.94199 0.83679 0.88199 0.91534 0.76966 0.91278 0.74630 0.85868 0.91049 0.88116 0.88465 0.91680 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 71.98 0.68 -1.37 16 2 C 0.14 1.90 2.57 44.99 0.12 2.01 16 3 H 0.06 1.20 7.58 -2.39 -0.02 1.19 16 4 C -0.12 -1.15 4.75 30.60 0.15 -1.00 16 5 C -0.11 -1.36 5.10 30.60 0.16 -1.20 16 6 C -0.11 -1.81 5.47 30.60 0.17 -1.64 16 7 C 0.06 1.27 5.69 86.30 0.49 1.76 16 8 N -0.69 -21.12 6.13 -517.91 -3.17 -24.30 16 9 C 0.06 2.20 6.17 85.56 0.53 2.73 16 10 C 0.44 20.81 7.82 87.66 0.69 21.50 16 11 O -0.62 -34.64 15.78 -3.06 -0.05 -34.69 16 12 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 13 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 14 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 15 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 16 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 17 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 N -0.70 -8.07 4.51 -442.55 -2.00 -10.07 16 22 C 0.51 9.49 7.15 87.66 0.63 10.12 16 23 O -0.58 -17.33 16.21 15.45 0.25 -17.08 16 24 C 0.06 0.79 3.86 30.51 0.12 0.91 16 25 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 26 C -0.14 -1.07 6.54 32.05 0.21 -0.86 16 27 C -0.15 -0.93 7.02 31.87 0.22 -0.70 16 28 C 0.04 0.46 7.79 72.47 0.56 1.02 16 29 O -0.39 -7.99 10.61 -130.48 -1.38 -9.37 16 30 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.74 7.75 -2.39 -0.02 0.72 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.34 10.91 8.43 -89.69 -0.76 10.15 16 42 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.40 19.29 7.90 -92.70 -0.73 18.56 16 45 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 46 H 0.42 1.95 8.60 -92.71 -0.80 1.16 16 47 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.07 0.77 8.05 -2.39 -0.02 0.75 16 49 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 51 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 52 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -79.61 427.40 -1.03 -80.64 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -1.36 Total: 35.64 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 6.00 Total: 14.78 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -6.51 Total: -114.67 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -1.18 Total: -61.14 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -79.61 -1.03 -80.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168961100.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.075 kcal (2) G-P(sol) polarization free energy of solvation -79.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds