Wall clock time and date at job start Wed Apr 1 2020 01:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47049 * 2 1 4 4 C 1.52999 * 109.47108 * 240.00312 * 2 1 3 5 5 C 1.53003 * 109.47191 * 174.99938 * 4 2 1 6 6 C 1.53000 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46891 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.46902 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99832 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47223 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99919 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00164 * 180.02562 * 10 9 8 13 13 C 1.37092 * 120.00151 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99973 * 179.97438 * 13 12 10 16 16 N 1.31413 * 119.99781 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00055 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47371 * 90.00130 * 17 15 13 19 19 H 1.48503 * 109.46901 * 210.00265 * 17 15 13 20 20 H 1.48500 * 109.46874 * 329.99709 * 17 15 13 21 21 N 1.46495 * 109.47212 * 120.00003 * 2 1 3 22 22 C 1.34780 * 120.00445 * 274.99912 * 21 2 1 23 23 O 1.21281 * 119.99206 * 0.02562 * 22 21 2 24 24 C 1.50690 * 120.00481 * 180.02562 * 22 21 2 25 25 H 1.08997 * 110.42029 * 57.30990 * 24 22 21 26 26 C 1.54479 * 110.37251 * 295.00239 * 24 22 21 27 27 C 1.54517 * 104.06037 * 217.18912 * 26 24 22 28 28 C 1.54481 * 104.06349 * 0.02562 * 27 26 24 29 29 O 1.44422 * 104.80535 * 23.97783 * 28 27 26 30 30 H 1.09004 * 109.47104 * 299.99347 * 1 2 3 31 31 H 1.09000 * 109.47504 * 59.99738 * 1 2 3 32 32 H 1.09004 * 109.47049 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.46765 * 294.99591 * 4 2 1 34 34 H 1.08997 * 109.47326 * 54.99185 * 4 2 1 35 35 H 1.09001 * 109.46747 * 299.99508 * 5 4 2 36 36 H 1.08998 * 109.47186 * 59.99755 * 5 4 2 37 37 H 1.08997 * 109.46988 * 299.99892 * 6 5 4 38 38 H 1.08998 * 109.47214 * 60.00007 * 6 5 4 39 39 H 1.09001 * 109.46747 * 299.99742 * 7 6 5 40 40 H 1.08998 * 109.47186 * 59.99990 * 7 6 5 41 41 H 1.00899 * 111.00092 * 303.95230 * 8 7 6 42 42 H 1.08998 * 109.47265 * 299.99766 * 9 8 7 43 43 H 1.09003 * 109.47268 * 60.00205 * 9 8 7 44 44 H 0.97002 * 119.99809 * 359.97438 * 12 10 9 45 45 H 0.97002 * 119.99958 * 179.97438 * 16 15 13 46 46 H 0.97004 * 120.00186 * 95.00308 * 21 2 1 47 47 H 1.08991 * 110.51153 * 98.54498 * 26 24 22 48 48 H 1.08995 * 110.50884 * 335.83281 * 26 24 22 49 49 H 1.08996 * 110.50794 * 118.64514 * 27 26 24 50 50 H 1.08994 * 110.50968 * 241.35202 * 27 26 24 51 51 H 1.08995 * 110.37274 * 142.81171 * 28 27 26 52 52 H 1.08999 * 110.36722 * 265.03812 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3350 -2.5627 7 6 5.5996 -1.2264 -2.6275 8 7 6.0892 -1.9189 -3.8270 9 6 7.5526 -1.8348 -3.9229 10 6 8.0170 -2.5541 -5.1631 11 8 7.2084 -3.0850 -5.8948 12 7 9.3308 -2.6083 -5.4586 13 6 9.7533 -3.2631 -6.5865 14 1 9.0333 -3.7359 -7.2381 15 6 11.1078 -3.3186 -6.8914 16 7 11.5128 -3.9467 -7.9724 17 14 12.3531 -2.5004 -5.7649 18 1 12.7996 -3.4704 -4.7330 19 1 13.5229 -2.0526 -6.5625 20 1 11.7266 -1.3275 -5.1036 21 7 2.0183 -0.6906 1.1961 22 6 2.1471 -0.0183 2.3572 23 8 1.8582 1.1583 2.4117 24 6 2.6500 -0.7285 3.5874 25 1 3.6296 -1.1677 3.3992 26 6 1.6474 -1.8185 4.0267 27 6 1.6894 -1.7671 5.5704 28 6 2.7119 -0.6516 5.8811 29 8 2.7139 0.1855 4.7042 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 3.8531 0.4371 -1.3574 36 1 3.9995 -1.0727 -0.4261 37 1 3.7865 -2.3852 -2.5186 38 1 3.6402 -0.8758 -3.4506 39 1 5.8875 -0.1761 -2.6718 40 1 6.0346 -1.6853 -1.7396 41 1 5.7801 -2.8793 -3.8416 42 1 7.8538 -0.7886 -3.9759 43 1 8.0016 -2.2980 -3.0442 44 1 9.9775 -2.1841 -4.8732 45 1 12.4583 -3.9851 -8.1855 46 1 2.2491 -1.6318 1.1526 47 1 1.9661 -2.7973 3.6684 48 1 0.6464 -1.5853 3.6638 49 1 0.7091 -1.5084 5.9706 50 1 2.0288 -2.7204 5.9752 51 1 2.3958 -0.0793 6.7533 52 1 3.7009 -1.0789 6.0465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168961102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:00 Heat of formation + Delta-G solvation = -133.491352 kcal Electronic energy + Delta-G solvation = -28750.291169 eV Core-core repulsion = 24556.114380 eV Total energy + Delta-G solvation = -4194.176789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80612 -39.12366 -38.50459 -37.21460 -35.94223 -34.05376 -33.53743 -32.70662 -31.73829 -31.59418 -29.71895 -28.75677 -26.34560 -24.68768 -24.04601 -22.70679 -22.12424 -21.37566 -21.29497 -20.80612 -19.35990 -18.32262 -18.06369 -17.19304 -16.76458 -16.26956 -15.92820 -15.66417 -15.55364 -15.10464 -15.01180 -14.76236 -14.44233 -14.29891 -14.18647 -13.85459 -13.71765 -13.39098 -13.27810 -13.04766 -12.61189 -12.48241 -12.42144 -12.36595 -12.31671 -12.03727 -11.92443 -11.87054 -11.60133 -11.41103 -11.38503 -11.23199 -11.14592 -10.86391 -10.73764 -10.59594 -10.53311 -10.00613 -9.97671 -9.57458 -9.49995 -8.58754 -8.19611 -8.12392 -6.31314 -3.82707 2.18561 2.44931 3.02822 3.06345 3.14816 3.50198 3.74330 3.88452 3.99701 4.09132 4.10407 4.25367 4.37886 4.46448 4.54968 4.59966 4.64297 4.72558 4.87265 4.92663 4.95888 5.01928 5.09412 5.16648 5.19053 5.21251 5.23508 5.28466 5.31781 5.39936 5.43946 5.47944 5.54231 5.63441 5.64340 5.70713 5.77508 5.83275 5.86322 5.94255 6.04072 6.11239 6.18441 6.19718 7.04939 7.12087 7.57930 7.60193 7.81011 8.14464 8.59845 8.94840 9.42394 9.82881 10.81825 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.001507 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.871664 B =18581.325249 C =19758.721944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.670 5.670 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.565 6.565 12 N -0.591 5.591 13 C -0.306 4.306 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.881 5.881 17 Si 0.880 3.120 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.269 1.269 21 N -0.721 5.721 22 C 0.519 3.481 23 O -0.518 6.518 24 C 0.055 3.945 25 H 0.096 0.904 26 C -0.145 4.145 27 C -0.154 4.154 28 C 0.040 3.960 29 O -0.345 6.345 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.349 0.651 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.400 0.600 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.097 0.903 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.419 4.694 28.335 35.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.164 4.164 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.085 4.085 10 C 0.235 3.765 11 O -0.447 6.447 12 N -0.230 5.230 13 C -0.434 4.434 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.521 5.521 17 Si 0.706 3.294 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.195 1.195 21 N -0.375 5.375 22 C 0.304 3.696 23 O -0.393 6.393 24 C -0.006 4.006 25 H 0.114 0.886 26 C -0.183 4.183 27 C -0.192 4.192 28 C -0.036 4.036 29 O -0.262 6.262 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.169 0.831 42 H 0.105 0.895 43 H 0.061 0.939 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.234 0.766 47 H 0.106 0.894 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.101 0.899 51 H 0.115 0.885 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.093 5.916 27.302 35.004 hybrid contribution 1.651 -0.742 1.493 2.346 sum -19.442 5.173 28.795 35.127 Atomic orbital electron populations 1.22182 0.95171 1.02168 1.02711 1.21049 0.93958 0.97742 0.83493 0.89227 1.21922 0.96353 1.01130 0.97031 1.21558 0.94618 1.01265 0.98121 1.21556 0.95015 1.00789 0.98139 1.21981 0.94944 0.99463 0.90669 1.60052 1.09389 1.21846 1.39001 1.21702 0.88934 1.01239 0.96601 1.19732 0.82851 0.85579 0.88293 1.90561 1.52923 1.49298 1.51896 1.42211 1.05986 1.50545 1.24302 1.19440 0.93501 1.30186 1.00309 0.86283 1.25039 0.96982 0.97456 0.96674 1.69623 1.16264 1.41787 1.24469 0.86667 0.81956 0.79778 0.80970 1.19674 1.20145 1.19470 1.46016 1.67982 1.14059 1.09456 1.20179 0.78047 0.87345 0.84022 1.90741 1.48358 1.15649 1.84516 1.22897 0.99776 0.90091 0.87848 0.88641 1.22924 1.00239 0.98703 0.96446 1.22949 1.01013 0.99971 0.95252 1.23515 0.98610 0.92104 0.89417 1.89301 1.95100 1.28262 1.13586 0.92198 0.91343 0.92410 0.91202 0.89891 0.91673 0.92141 0.92008 0.90768 0.91233 0.95806 0.83120 0.89542 0.93875 0.79691 0.91620 0.76579 0.89416 0.90100 0.90272 0.89949 0.88508 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.48 37.16 0.35 -0.69 16 2 C 0.14 0.95 2.57 -67.93 -0.17 0.78 16 3 H 0.09 0.80 7.58 -51.93 -0.39 0.41 16 4 C -0.13 -0.72 4.75 -26.73 -0.13 -0.85 16 5 C -0.12 -0.83 5.10 -26.73 -0.14 -0.96 16 6 C -0.12 -1.06 5.47 -26.73 -0.15 -1.21 16 7 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 8 N -0.67 -10.35 6.12 -115.06 -0.70 -11.06 16 9 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 10 C 0.45 10.30 7.82 -10.98 -0.09 10.22 16 11 O -0.56 -15.29 15.78 5.55 0.09 -15.21 16 12 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 13 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 14 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -25.80 13.96 55.50 0.77 -25.02 16 17 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 21 N -0.72 -4.42 4.51 -53.81 -0.24 -4.67 16 22 C 0.52 4.74 7.04 -10.99 -0.08 4.66 16 23 O -0.52 -7.22 16.21 -13.67 -0.22 -7.44 16 24 C 0.06 0.38 3.71 -27.11 -0.10 0.28 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 26 C -0.15 -0.62 6.61 -25.16 -0.17 -0.78 16 27 C -0.15 -0.59 7.09 -25.16 -0.18 -0.77 16 28 C 0.04 0.22 7.63 37.93 0.29 0.51 16 29 O -0.34 -3.35 10.91 -54.46 -0.59 -3.94 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.40 7.75 -51.93 -0.40 0.00 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.40 1.41 8.60 -40.82 -0.35 1.06 16 47 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.08 0.40 7.86 -51.93 -0.41 -0.01 16 49 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 51 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 424.11 15.07 6.39 6.39 Total: -1.00 -36.77 424.11 -9.42 -46.19 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -9.29 Total: 9.51 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -0.85 Total: 4.80 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.23 Total: -54.98 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.73 Total: -26.59 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -36.77 -9.42 -46.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168961102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.297 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds