Wall clock time and date at job start Wed Apr 1 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47049 * 2 1 4 4 C 1.52999 * 109.47108 * 240.00312 * 2 1 3 5 5 C 1.53003 * 109.47191 * 174.99938 * 4 2 1 6 6 C 1.53000 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46891 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.46902 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99832 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47223 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99919 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00164 * 180.02562 * 10 9 8 13 13 C 1.37092 * 120.00151 * 179.97438 * 12 10 9 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99973 * 179.97438 * 13 12 10 16 16 N 1.31413 * 119.99781 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00055 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47371 * 90.00130 * 17 15 13 19 19 H 1.48503 * 109.46901 * 210.00265 * 17 15 13 20 20 H 1.48500 * 109.46874 * 329.99709 * 17 15 13 21 21 N 1.46495 * 109.47212 * 120.00003 * 2 1 3 22 22 C 1.34780 * 120.00445 * 274.99912 * 21 2 1 23 23 O 1.21281 * 119.99206 * 0.02562 * 22 21 2 24 24 C 1.50690 * 120.00481 * 180.02562 * 22 21 2 25 25 H 1.08997 * 110.42029 * 57.30990 * 24 22 21 26 26 C 1.54479 * 110.37251 * 295.00239 * 24 22 21 27 27 C 1.54517 * 104.06037 * 217.18912 * 26 24 22 28 28 C 1.54481 * 104.06349 * 0.02562 * 27 26 24 29 29 O 1.44422 * 104.80535 * 23.97783 * 28 27 26 30 30 H 1.09004 * 109.47104 * 299.99347 * 1 2 3 31 31 H 1.09000 * 109.47504 * 59.99738 * 1 2 3 32 32 H 1.09004 * 109.47049 * 180.02562 * 1 2 3 33 33 H 1.09010 * 109.46765 * 294.99591 * 4 2 1 34 34 H 1.08997 * 109.47326 * 54.99185 * 4 2 1 35 35 H 1.09001 * 109.46747 * 299.99508 * 5 4 2 36 36 H 1.08998 * 109.47186 * 59.99755 * 5 4 2 37 37 H 1.08997 * 109.46988 * 299.99892 * 6 5 4 38 38 H 1.08998 * 109.47214 * 60.00007 * 6 5 4 39 39 H 1.09001 * 109.46747 * 299.99742 * 7 6 5 40 40 H 1.08998 * 109.47186 * 59.99990 * 7 6 5 41 41 H 1.00899 * 111.00092 * 303.95230 * 8 7 6 42 42 H 1.08998 * 109.47265 * 299.99766 * 9 8 7 43 43 H 1.09003 * 109.47268 * 60.00205 * 9 8 7 44 44 H 0.97002 * 119.99809 * 359.97438 * 12 10 9 45 45 H 0.97002 * 119.99958 * 179.97438 * 16 15 13 46 46 H 0.97004 * 120.00186 * 95.00308 * 21 2 1 47 47 H 1.08991 * 110.51153 * 98.54498 * 26 24 22 48 48 H 1.08995 * 110.50884 * 335.83281 * 26 24 22 49 49 H 1.08996 * 110.50794 * 118.64514 * 27 26 24 50 50 H 1.08994 * 110.50968 * 241.35202 * 27 26 24 51 51 H 1.08995 * 110.37274 * 142.81171 * 28 27 26 52 52 H 1.08999 * 110.36722 * 265.03812 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3350 -2.5627 7 6 5.5996 -1.2264 -2.6275 8 7 6.0892 -1.9189 -3.8270 9 6 7.5526 -1.8348 -3.9229 10 6 8.0170 -2.5541 -5.1631 11 8 7.2084 -3.0850 -5.8948 12 7 9.3308 -2.6083 -5.4586 13 6 9.7533 -3.2631 -6.5865 14 1 9.0333 -3.7359 -7.2381 15 6 11.1078 -3.3186 -6.8914 16 7 11.5128 -3.9467 -7.9724 17 14 12.3531 -2.5004 -5.7649 18 1 12.7996 -3.4704 -4.7330 19 1 13.5229 -2.0526 -6.5625 20 1 11.7266 -1.3275 -5.1036 21 7 2.0183 -0.6906 1.1961 22 6 2.1471 -0.0183 2.3572 23 8 1.8582 1.1583 2.4117 24 6 2.6500 -0.7285 3.5874 25 1 3.6296 -1.1677 3.3992 26 6 1.6474 -1.8185 4.0267 27 6 1.6894 -1.7671 5.5704 28 6 2.7119 -0.6516 5.8811 29 8 2.7139 0.1855 4.7042 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2617 -2.1370 35 1 3.8531 0.4371 -1.3574 36 1 3.9995 -1.0727 -0.4261 37 1 3.7865 -2.3852 -2.5186 38 1 3.6402 -0.8758 -3.4506 39 1 5.8875 -0.1761 -2.6718 40 1 6.0346 -1.6853 -1.7396 41 1 5.7801 -2.8793 -3.8416 42 1 7.8538 -0.7886 -3.9759 43 1 8.0016 -2.2980 -3.0442 44 1 9.9775 -2.1841 -4.8732 45 1 12.4583 -3.9851 -8.1855 46 1 2.2491 -1.6318 1.1526 47 1 1.9661 -2.7973 3.6684 48 1 0.6464 -1.5853 3.6638 49 1 0.7091 -1.5084 5.9706 50 1 2.0288 -2.7204 5.9752 51 1 2.3958 -0.0793 6.7533 52 1 3.7009 -1.0789 6.0465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168961102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:59 Heat of formation + Delta-G solvation = -162.351110 kcal Electronic energy + Delta-G solvation = -28751.542622 eV Core-core repulsion = 24556.114380 eV Total energy + Delta-G solvation = -4195.428242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39286 -40.31016 -39.65557 -38.00817 -36.94893 -35.95494 -34.42992 -33.74597 -33.21229 -32.28485 -30.23417 -29.67658 -27.70709 -25.72415 -25.03081 -23.64392 -22.49596 -22.08893 -21.88706 -21.41519 -21.25620 -20.23412 -18.61798 -17.81106 -17.68995 -17.31032 -17.16408 -16.73110 -16.28479 -16.14282 -15.83940 -15.72404 -15.66574 -15.26859 -14.92877 -14.79217 -14.68635 -14.46000 -14.35885 -14.24542 -13.88859 -13.61477 -13.37970 -13.14067 -12.97265 -12.80267 -12.79109 -12.72195 -12.42583 -12.37465 -12.26505 -12.09781 -11.98241 -11.85362 -11.70216 -11.54740 -11.51631 -11.39958 -11.04499 -10.65193 -10.44375 -10.25490 -10.11952 -9.30320 -8.41716 -6.02821 1.30677 1.35326 1.44759 1.53056 1.92173 1.94772 2.22882 2.73087 3.07343 3.14718 3.39470 3.49098 3.67744 3.78248 3.92085 4.01407 4.07955 4.08448 4.14604 4.20606 4.26412 4.34482 4.37981 4.43636 4.50430 4.56971 4.62138 4.66994 4.74768 4.79267 4.79579 4.86054 4.91796 4.95137 4.99879 5.00785 5.08484 5.11899 5.20877 5.29861 5.39644 5.50106 5.53820 5.55735 5.74312 5.91096 6.08365 6.43352 6.53521 6.59443 6.87358 7.22094 7.39074 7.95529 8.75878 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.001507 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.871664 B =18581.325249 C =19758.721944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.117 4.117 5 C -0.110 4.110 6 C -0.110 4.110 7 C 0.060 3.940 8 N -0.691 5.691 9 C 0.062 3.938 10 C 0.447 3.553 11 O -0.615 6.615 12 N -0.591 5.591 13 C -0.331 4.331 14 H 0.055 0.945 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.232 1.232 21 N -0.703 5.703 22 C 0.515 3.485 23 O -0.577 6.577 24 C 0.052 3.948 25 H 0.119 0.881 26 C -0.139 4.139 27 C -0.150 4.150 28 C 0.032 3.968 29 O -0.389 6.389 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.042 0.958 41 H 0.345 0.655 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.416 0.584 47 H 0.118 0.882 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.105 0.895 51 H 0.097 0.903 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.612 4.541 31.336 37.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.155 4.155 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.069 4.069 8 N -0.324 5.324 9 C -0.071 4.071 10 C 0.235 3.765 11 O -0.499 6.499 12 N -0.232 5.232 13 C -0.460 4.460 14 H 0.073 0.927 15 C -0.213 4.213 16 N -0.574 5.574 17 Si 0.785 3.215 18 H -0.180 1.180 19 H -0.200 1.200 20 H -0.156 1.156 21 N -0.357 5.357 22 C 0.301 3.699 23 O -0.456 6.456 24 C -0.009 4.009 25 H 0.136 0.864 26 C -0.177 4.177 27 C -0.188 4.188 28 C -0.044 4.044 29 O -0.308 6.308 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.163 0.837 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.254 0.746 47 H 0.137 0.863 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.124 0.876 51 H 0.116 0.884 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.301 5.734 30.319 36.936 hybrid contribution 1.289 -0.748 0.481 1.566 sum -19.012 4.986 30.800 36.537 Atomic orbital electron populations 1.22132 0.94765 1.02925 1.01927 1.20983 0.94244 0.96747 0.84163 0.91831 1.21844 0.95382 1.01994 0.96270 1.21481 0.95405 1.00461 0.97486 1.21489 0.93613 1.01295 0.98433 1.22079 0.96158 0.99072 0.89555 1.60066 1.08640 1.21926 1.41757 1.21624 0.90016 1.01602 0.93817 1.21023 0.81928 0.84121 0.89410 1.90538 1.54197 1.51110 1.54081 1.42038 1.07051 1.50724 1.23420 1.19026 0.93226 1.32010 1.01780 0.92670 1.26120 0.99081 0.97584 0.98508 1.69805 1.17302 1.43315 1.26987 0.85359 0.77843 0.79788 0.78500 1.17973 1.20030 1.15584 1.45896 1.66665 1.14671 1.08516 1.20733 0.77160 0.86774 0.85238 1.90711 1.51185 1.18229 1.85483 1.23104 1.01502 0.90027 0.86247 0.86358 1.22958 0.99000 0.99086 0.96677 1.22963 1.00439 1.00395 0.95002 1.23733 1.00024 0.92348 0.88287 1.89260 1.95406 1.30669 1.15434 0.94492 0.90662 0.90797 0.89410 0.89748 0.92646 0.91124 0.91371 0.92156 0.91060 0.94007 0.83666 0.87261 0.90473 0.77460 0.91119 0.74623 0.86332 0.91129 0.90655 0.87605 0.88431 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 71.98 0.68 -1.22 16 2 C 0.14 1.79 2.57 44.99 0.12 1.91 16 3 H 0.06 1.17 7.58 -2.38 -0.02 1.15 16 4 C -0.12 -1.08 4.75 30.59 0.15 -0.93 16 5 C -0.11 -1.29 5.10 30.60 0.16 -1.13 16 6 C -0.11 -1.73 5.47 30.60 0.17 -1.57 16 7 C 0.06 1.17 5.69 86.30 0.49 1.66 16 8 N -0.69 -19.89 6.12 -517.93 -3.17 -23.06 16 9 C 0.06 1.88 6.17 85.56 0.53 2.41 16 10 C 0.45 20.26 7.82 87.66 0.69 20.95 16 11 O -0.61 -34.26 15.78 -3.07 -0.05 -34.31 16 12 N -0.59 -27.92 5.09 -306.98 -1.56 -29.48 16 13 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 14 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 15 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 16 N -0.93 -56.26 13.96 21.66 0.30 -55.95 16 17 Si 0.97 38.61 27.74 68.60 1.90 40.51 16 18 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 19 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.23 -7.86 6.52 99.48 0.65 -7.21 16 21 N -0.70 -7.57 4.51 -442.55 -2.00 -9.57 16 22 C 0.51 9.23 7.04 87.65 0.62 9.85 16 23 O -0.58 -16.87 16.21 15.35 0.25 -16.62 16 24 C 0.05 0.65 3.71 30.35 0.11 0.76 16 25 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 26 C -0.14 -0.86 6.61 31.61 0.21 -0.65 16 27 C -0.15 -0.84 7.09 31.61 0.22 -0.61 16 28 C 0.03 0.31 7.63 72.49 0.55 0.87 16 29 O -0.39 -7.51 10.91 -130.59 -1.42 -8.94 16 30 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.70 7.75 -2.39 -0.02 0.68 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.34 10.40 8.43 -89.69 -0.76 9.65 16 42 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.39 15.19 5.76 -92.71 -0.53 14.65 16 45 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 46 H 0.42 1.70 8.60 -92.71 -0.80 0.90 16 47 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.07 0.59 7.86 -2.39 -0.02 0.57 16 49 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.11 0.10 8.14 -2.39 -0.02 0.09 16 51 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -87.85 424.11 -0.97 -88.81 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -1.22 Total: 35.28 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.01 Total: 13.32 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -6.43 Total: -118.06 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -1.22 Total: -59.87 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.51 kcal Total: -87.85 -0.97 -88.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168961102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.540 kcal (2) G-P(sol) polarization free energy of solvation -87.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds