Wall clock time and date at job start Wed Apr 1 2020 01:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.53006 * 109.46846 * 185.00166 * 4 2 1 6 6 C 1.53000 * 109.46846 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46846 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46859 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99753 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.46816 * 179.97438 * 9 8 7 11 11 O 1.21294 * 120.00415 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99919 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00583 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99331 * 359.97438 * 13 12 10 15 15 C 1.38945 * 120.00620 * 180.02562 * 13 12 10 16 16 N 1.31417 * 119.99805 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00312 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47211 * 60.00056 * 17 15 13 19 19 H 1.48504 * 109.47310 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47152 * 300.00168 * 17 15 13 21 21 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 22 22 C 1.34777 * 120.00075 * 84.99755 * 21 2 1 23 23 O 1.21287 * 119.99865 * 0.02562 * 22 21 2 24 24 C 1.50699 * 120.00179 * 179.97438 * 22 21 2 25 25 H 1.09002 * 109.86820 * 303.99376 * 24 22 21 26 26 C 1.54100 * 109.87915 * 65.00243 * 24 22 21 27 27 C 1.54810 * 104.18731 * 121.45147 * 26 24 22 28 28 C 1.54997 * 102.09195 * 20.88229 * 27 26 24 29 29 O 1.43740 * 109.87913 * 182.83492 * 24 22 21 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 34 34 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 35 35 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 36 36 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 37 37 H 1.09002 * 109.47069 * 299.99434 * 6 5 4 38 38 H 1.09001 * 109.47624 * 59.99715 * 6 5 4 39 39 H 1.09002 * 109.46824 * 299.99583 * 7 6 5 40 40 H 1.09001 * 109.47241 * 59.99481 * 7 6 5 41 41 H 1.00898 * 110.99625 * 303.95078 * 8 7 6 42 42 H 1.08995 * 109.46721 * 299.99926 * 9 8 7 43 43 H 1.08996 * 109.47149 * 59.99910 * 9 8 7 44 44 H 0.97006 * 119.99989 * 0.02562 * 12 10 9 45 45 H 0.96996 * 119.99691 * 180.02562 * 16 15 13 46 46 H 0.96997 * 120.00274 * 264.99726 * 21 2 1 47 47 H 1.09001 * 110.48815 * 240.13064 * 26 24 22 48 48 H 1.09006 * 110.48330 * 2.64714 * 26 24 22 49 49 H 1.09007 * 110.90119 * 139.07901 * 27 26 24 50 50 H 1.09000 * 110.90883 * 262.68274 * 27 26 24 51 51 H 1.08999 * 110.61657 * 81.47508 * 28 27 26 52 52 H 1.08995 * 110.61750 * 204.31388 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5997 -1.2266 2.6273 8 7 6.0894 -1.9192 3.8267 9 6 7.5531 -1.8371 3.9212 10 6 8.0174 -2.5564 5.1613 11 8 7.2086 -3.0859 5.8941 12 7 9.3314 -2.6124 5.4558 13 6 9.7540 -3.2673 6.5837 14 1 9.0337 -3.7380 7.2365 15 6 11.1086 -3.3246 6.8875 16 7 11.9848 -2.7505 6.0939 17 14 11.6842 -4.2162 8.4246 18 1 11.2719 -5.6411 8.3541 19 1 13.1638 -4.1327 8.5206 20 1 11.0746 -3.5832 9.6216 21 7 2.0183 -0.6906 -1.1962 22 6 2.1469 -0.0183 -2.3572 23 8 1.8589 1.1587 -2.4115 24 6 2.6498 -0.7285 -3.5875 25 1 3.6188 -1.1836 -3.3825 26 6 1.6417 -1.8126 -4.0155 27 6 1.2529 -1.4194 -5.4615 28 6 2.4423 -0.5201 -5.8845 29 8 2.7644 0.2024 -4.6767 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.6054 -0.2618 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4259 36 1 3.8532 0.4370 1.3573 37 1 3.6402 -0.8741 3.4507 38 1 3.7864 -2.3844 2.5200 39 1 6.0340 -1.6868 1.7397 40 1 5.8885 -0.1764 2.6702 41 1 5.6519 -1.5536 4.6592 42 1 8.0004 -2.3014 3.0424 43 1 7.8557 -0.7913 3.9735 44 1 9.9782 -2.1894 4.8696 45 1 12.9305 -2.7909 6.3058 46 1 2.2490 -1.6317 -1.1527 47 1 2.1104 -2.7966 -4.0006 48 1 0.7667 -1.7977 -3.3656 49 1 1.1854 -2.3008 -6.0994 50 1 0.3179 -0.8592 -5.4742 51 1 3.2882 -1.1282 -6.2051 52 1 2.1422 0.1658 -6.6766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168961104.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:03 Heat of formation + Delta-G solvation = -140.623118 kcal Electronic energy + Delta-G solvation = -28709.828524 eV Core-core repulsion = 24515.342479 eV Total energy + Delta-G solvation = -4194.486046 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80244 -39.05310 -38.30482 -37.13784 -35.84720 -33.99547 -33.47715 -32.67480 -31.64240 -31.18827 -29.68685 -28.64872 -26.19418 -24.55695 -24.09068 -22.70242 -22.28393 -21.31433 -21.23727 -20.73693 -19.18956 -18.01332 -17.86493 -17.12752 -16.83156 -16.21759 -15.89463 -15.59655 -15.47341 -14.93910 -14.91167 -14.48430 -14.43242 -14.21785 -14.08842 -13.89567 -13.73047 -13.45516 -13.20532 -13.16290 -12.57270 -12.37141 -12.34035 -12.23122 -12.16440 -11.81422 -11.68543 -11.59658 -11.50885 -11.48383 -11.34383 -11.12719 -11.01351 -10.82164 -10.67738 -10.57958 -10.43649 -10.20421 -9.83223 -9.49265 -9.44857 -8.44620 -8.03403 -7.94726 -6.40795 -3.81747 2.23939 2.52320 3.20709 3.26240 3.30718 3.49917 3.90387 3.92083 4.04869 4.15881 4.23271 4.26341 4.42409 4.54731 4.62466 4.65216 4.68542 4.81255 4.97453 5.02842 5.06372 5.12946 5.13658 5.19276 5.21424 5.24809 5.30278 5.30463 5.36112 5.45634 5.49082 5.52026 5.63286 5.67899 5.75950 5.80863 5.84148 5.90171 6.01013 6.09580 6.17654 6.22099 6.27102 6.30406 7.10859 7.25725 7.55719 7.69766 7.86865 8.07132 8.62390 9.18606 9.55328 10.06984 10.76899 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.001410 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.322434 B =19860.335980 C =20819.923178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.089 0.911 4 C -0.126 4.126 5 C -0.118 4.118 6 C -0.117 4.117 7 C 0.058 3.942 8 N -0.671 5.671 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.301 4.301 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 N -0.722 5.722 22 C 0.514 3.486 23 O -0.520 6.520 24 C 0.058 3.942 25 H 0.096 0.904 26 C -0.148 4.148 27 C -0.154 4.154 28 C 0.043 3.957 29 O -0.347 6.347 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.348 0.652 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.400 0.600 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.065 0.935 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 3.534 -23.087 31.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.200 5.200 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 N -0.376 5.376 22 C 0.299 3.701 23 O -0.394 6.394 24 C -0.003 4.003 25 H 0.114 0.886 26 C -0.186 4.186 27 C -0.192 4.192 28 C -0.033 4.033 29 O -0.265 6.265 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.167 0.833 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.235 0.765 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.083 0.917 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.324 3.677 -22.889 32.184 hybrid contribution 1.070 0.045 0.610 1.232 sum -21.254 3.721 -22.279 31.015 Atomic orbital electron populations 1.22178 0.95243 1.02139 1.02640 1.21036 0.93889 0.97725 0.83603 0.89310 1.21919 0.96390 1.01179 0.96937 1.21560 0.94572 1.01048 0.98388 1.21554 0.94939 1.01448 0.97510 1.21978 0.95025 0.95841 0.94265 1.60082 1.04858 1.60025 1.05344 1.21664 0.89030 0.98702 0.98819 1.19831 0.83397 0.86114 0.88058 1.90516 1.53420 1.50527 1.52357 1.41863 1.05429 1.48940 1.23816 1.19664 0.91986 1.30376 1.00998 0.87975 1.25262 0.95605 0.97804 0.99252 1.69608 1.02543 1.44243 1.37951 0.85908 0.77229 0.79794 0.81221 1.19887 1.20979 1.19929 1.46037 1.68008 1.14113 1.09475 1.20451 0.77964 0.87473 0.84244 1.90730 1.48436 1.15670 1.84587 1.22654 0.99797 0.89890 0.87975 0.88620 1.22955 0.99391 0.98578 0.97636 1.23146 0.99773 1.00626 0.95635 1.23655 0.96143 0.95186 0.88355 1.89024 1.90161 1.33039 1.14286 0.92413 0.91426 0.92226 0.90082 0.91106 0.91876 0.91924 0.91985 0.90938 0.91337 0.95749 0.83267 0.89692 0.93969 0.77454 0.91831 0.76530 0.89333 0.89903 0.89621 0.90208 0.91663 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.48 37.16 0.35 -0.73 16 2 C 0.14 1.01 2.57 -67.93 -0.17 0.83 16 3 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 4 C -0.13 -0.78 4.75 -26.73 -0.13 -0.91 16 5 C -0.12 -0.90 5.10 -26.73 -0.14 -1.04 16 6 C -0.12 -1.13 5.47 -26.73 -0.15 -1.28 16 7 C 0.06 0.71 5.69 -3.82 -0.02 0.69 16 8 N -0.67 -11.00 6.13 -115.06 -0.70 -11.70 16 9 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 10 C 0.44 10.58 7.82 -10.99 -0.09 10.50 16 11 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 12 N -0.56 -14.48 5.29 -10.96 -0.06 -14.54 16 13 C -0.30 -8.47 9.68 -14.94 -0.14 -8.62 16 14 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 17 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 N -0.72 -4.76 4.50 -53.81 -0.24 -5.01 16 22 C 0.51 4.89 6.92 -10.99 -0.08 4.81 16 23 O -0.52 -7.40 16.19 -14.02 -0.23 -7.63 16 24 C 0.06 0.43 3.84 -27.31 -0.10 0.32 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 C -0.15 -0.65 6.61 -25.20 -0.17 -0.82 16 27 C -0.15 -0.67 7.15 -24.72 -0.18 -0.85 16 28 C 0.04 0.25 7.72 38.21 0.29 0.54 16 29 O -0.35 -3.47 10.73 -54.81 -0.59 -4.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.47 7.75 -51.93 -0.40 0.06 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.35 5.88 8.43 -39.29 -0.33 5.54 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.40 1.63 8.60 -40.82 -0.35 1.28 16 47 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.08 0.37 7.69 -51.93 -0.40 -0.03 16 49 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 52 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 427.00 15.07 6.43 6.43 Total: -1.00 -35.53 427.00 -9.76 -45.29 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -9.32 Total: 10.19 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.84 Total: 4.85 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.28 Total: -55.20 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.73 Total: -27.68 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -35.53 -9.76 -45.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168961104.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.330 kcal (2) G-P(sol) polarization free energy of solvation -35.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds