Wall clock time and date at job start Wed Apr 1 2020 01:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.53006 * 109.46846 * 185.00166 * 4 2 1 6 6 C 1.53000 * 109.46846 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46846 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46859 * 180.02562 * 7 6 5 9 9 C 1.46903 * 110.99753 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.46816 * 179.97438 * 9 8 7 11 11 O 1.21294 * 120.00415 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99919 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00583 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99331 * 359.97438 * 13 12 10 15 15 C 1.38945 * 120.00620 * 180.02562 * 13 12 10 16 16 N 1.31417 * 119.99805 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00312 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47211 * 60.00056 * 17 15 13 19 19 H 1.48504 * 109.47310 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47152 * 300.00168 * 17 15 13 21 21 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 22 22 C 1.34777 * 120.00075 * 84.99755 * 21 2 1 23 23 O 1.21287 * 119.99865 * 0.02562 * 22 21 2 24 24 C 1.50699 * 120.00179 * 179.97438 * 22 21 2 25 25 H 1.09002 * 109.86820 * 303.99376 * 24 22 21 26 26 C 1.54100 * 109.87915 * 65.00243 * 24 22 21 27 27 C 1.54810 * 104.18731 * 121.45147 * 26 24 22 28 28 C 1.54997 * 102.09195 * 20.88229 * 27 26 24 29 29 O 1.43740 * 109.87913 * 182.83492 * 24 22 21 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 34 34 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 35 35 H 1.09002 * 109.46824 * 299.99583 * 5 4 2 36 36 H 1.09001 * 109.47241 * 59.99481 * 5 4 2 37 37 H 1.09002 * 109.47069 * 299.99434 * 6 5 4 38 38 H 1.09001 * 109.47624 * 59.99715 * 6 5 4 39 39 H 1.09002 * 109.46824 * 299.99583 * 7 6 5 40 40 H 1.09001 * 109.47241 * 59.99481 * 7 6 5 41 41 H 1.00898 * 110.99625 * 303.95078 * 8 7 6 42 42 H 1.08995 * 109.46721 * 299.99926 * 9 8 7 43 43 H 1.08996 * 109.47149 * 59.99910 * 9 8 7 44 44 H 0.97006 * 119.99989 * 0.02562 * 12 10 9 45 45 H 0.96996 * 119.99691 * 180.02562 * 16 15 13 46 46 H 0.96997 * 120.00274 * 264.99726 * 21 2 1 47 47 H 1.09001 * 110.48815 * 240.13064 * 26 24 22 48 48 H 1.09006 * 110.48330 * 2.64714 * 26 24 22 49 49 H 1.09007 * 110.90119 * 139.07901 * 27 26 24 50 50 H 1.09000 * 110.90883 * 262.68274 * 27 26 24 51 51 H 1.08999 * 110.61657 * 81.47508 * 28 27 26 52 52 H 1.08995 * 110.61750 * 204.31388 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5997 -1.2266 2.6273 8 7 6.0894 -1.9192 3.8267 9 6 7.5531 -1.8371 3.9212 10 6 8.0174 -2.5564 5.1613 11 8 7.2086 -3.0859 5.8941 12 7 9.3314 -2.6124 5.4558 13 6 9.7540 -3.2673 6.5837 14 1 9.0337 -3.7380 7.2365 15 6 11.1086 -3.3246 6.8875 16 7 11.9848 -2.7505 6.0939 17 14 11.6842 -4.2162 8.4246 18 1 11.2719 -5.6411 8.3541 19 1 13.1638 -4.1327 8.5206 20 1 11.0746 -3.5832 9.6216 21 7 2.0183 -0.6906 -1.1962 22 6 2.1469 -0.0183 -2.3572 23 8 1.8589 1.1587 -2.4115 24 6 2.6498 -0.7285 -3.5875 25 1 3.6188 -1.1836 -3.3825 26 6 1.6417 -1.8126 -4.0155 27 6 1.2529 -1.4194 -5.4615 28 6 2.4423 -0.5201 -5.8845 29 8 2.7644 0.2024 -4.6767 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 1.6054 -0.2618 2.1370 34 1 1.7516 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4259 36 1 3.8532 0.4370 1.3573 37 1 3.6402 -0.8741 3.4507 38 1 3.7864 -2.3844 2.5200 39 1 6.0340 -1.6868 1.7397 40 1 5.8885 -0.1764 2.6702 41 1 5.6519 -1.5536 4.6592 42 1 8.0004 -2.3014 3.0424 43 1 7.8557 -0.7913 3.9735 44 1 9.9782 -2.1894 4.8696 45 1 12.9305 -2.7909 6.3058 46 1 2.2490 -1.6317 -1.1527 47 1 2.1104 -2.7966 -4.0006 48 1 0.7667 -1.7977 -3.3656 49 1 1.1854 -2.3008 -6.0994 50 1 0.3179 -0.8592 -5.4742 51 1 3.2882 -1.1282 -6.2051 52 1 2.1422 0.1658 -6.6766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168961104.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:02 Heat of formation + Delta-G solvation = -166.972197 kcal Electronic energy + Delta-G solvation = -28710.971106 eV Core-core repulsion = 24515.342479 eV Total energy + Delta-G solvation = -4195.628627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42279 -40.16606 -39.62413 -37.99068 -36.92911 -35.91138 -34.42367 -33.32177 -33.17951 -32.26981 -30.23460 -29.62119 -27.63635 -25.86762 -24.91155 -23.65839 -22.69549 -22.09528 -21.88271 -21.38255 -21.02081 -19.90068 -18.59355 -17.85653 -17.66019 -17.37614 -17.12209 -16.55251 -16.29302 -16.11623 -15.97938 -15.78157 -15.56484 -15.23810 -15.13618 -14.61110 -14.56902 -14.53780 -14.37142 -13.96726 -13.64800 -13.48790 -13.33115 -13.14161 -12.95367 -12.78184 -12.77553 -12.67347 -12.43651 -12.31958 -12.20206 -12.14897 -12.11623 -11.87016 -11.82409 -11.58020 -11.50628 -11.40165 -11.13926 -10.49707 -10.35754 -10.10597 -10.02411 -9.32691 -8.46778 -5.96059 1.40285 1.42198 1.53374 1.54861 1.95873 2.04249 2.29426 2.92488 3.03282 3.20246 3.47618 3.51313 3.69019 3.79961 3.88105 4.00372 4.04464 4.05096 4.25732 4.29054 4.31188 4.32651 4.42495 4.47011 4.50459 4.55591 4.62779 4.71739 4.74024 4.77187 4.78754 4.88329 4.89931 4.94770 4.98224 4.99522 5.06056 5.12775 5.20664 5.30063 5.38088 5.40297 5.50088 5.56577 5.79531 5.90101 6.11741 6.41757 6.55108 6.59467 7.11744 7.23651 7.55207 8.10368 8.70333 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.001410 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.322434 B =19860.335980 C =20819.923178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.062 0.938 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.108 4.108 7 C 0.058 3.942 8 N -0.684 5.684 9 C 0.064 3.936 10 C 0.436 3.564 11 O -0.623 6.623 12 N -0.573 5.573 13 C -0.337 4.337 14 H 0.080 0.920 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.995 3.005 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.272 1.272 21 N -0.706 5.706 22 C 0.509 3.491 23 O -0.578 6.578 24 C 0.054 3.946 25 H 0.116 0.884 26 C -0.141 4.141 27 C -0.152 4.152 28 C 0.035 3.965 29 O -0.390 6.390 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.343 0.657 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.416 0.584 47 H 0.118 0.882 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.067 0.933 51 H 0.082 0.918 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.938 2.050 -23.685 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.146 4.146 7 C -0.070 4.070 8 N -0.317 5.317 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.467 4.467 14 H 0.098 0.902 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.197 1.197 21 N -0.360 5.360 22 C 0.295 3.705 23 O -0.457 6.457 24 C -0.007 4.007 25 H 0.133 0.867 26 C -0.179 4.179 27 C -0.189 4.189 28 C -0.041 4.041 29 O -0.309 6.309 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.253 0.747 47 H 0.136 0.864 48 H 0.100 0.900 49 H 0.129 0.871 50 H 0.086 0.914 51 H 0.100 0.900 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.392 2.165 -23.509 32.539 hybrid contribution 1.068 0.529 0.763 1.415 sum -21.324 2.694 -22.746 31.295 Atomic orbital electron populations 1.22122 0.94644 1.02939 1.01946 1.20983 0.94321 0.96681 0.84211 0.91939 1.21839 0.95183 1.02028 0.96366 1.21486 0.95571 1.00248 0.97587 1.21480 0.93172 1.01573 0.98401 1.22101 0.96577 0.95790 0.92562 1.60118 1.03682 1.61322 1.06544 1.21534 0.90361 0.98969 0.95968 1.20889 0.82437 0.85112 0.89167 1.90482 1.54252 1.52085 1.54184 1.41937 1.06305 1.49208 1.23531 1.19661 0.92433 1.32284 1.02315 0.90248 1.26059 0.95116 0.98021 1.02021 1.69671 1.02946 1.44399 1.39068 0.84968 0.77298 0.78479 0.77458 1.19652 1.19462 1.19682 1.45933 1.66736 1.14697 1.08604 1.21012 0.77083 0.86914 0.85458 1.90699 1.51229 1.18190 1.85541 1.22865 1.01453 0.89910 0.86451 0.86677 1.22998 0.98754 0.98800 0.97324 1.23156 0.98526 1.01104 0.96121 1.23880 0.97441 0.95529 0.87235 1.88980 1.90548 1.35253 1.16092 0.90778 0.90621 0.94462 0.89581 0.89423 0.91267 0.92777 0.92120 0.91106 0.90589 0.95119 0.83873 0.87869 0.91929 0.76980 0.91267 0.74672 0.86401 0.90037 0.87120 0.91427 0.89950 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.48 71.98 0.68 -1.28 16 2 C 0.14 1.92 2.57 44.99 0.12 2.04 16 3 H 0.06 1.21 7.58 -2.39 -0.02 1.19 16 4 C -0.12 -1.19 4.75 30.60 0.15 -1.05 16 5 C -0.11 -1.48 5.10 30.60 0.16 -1.32 16 6 C -0.11 -1.89 5.47 30.60 0.17 -1.72 16 7 C 0.06 1.30 5.69 86.30 0.49 1.79 16 8 N -0.68 -21.52 6.13 -517.92 -3.17 -24.70 16 9 C 0.06 2.23 6.17 85.55 0.53 2.76 16 10 C 0.44 21.03 7.82 87.66 0.69 21.71 16 11 O -0.62 -34.88 15.78 -3.07 -0.05 -34.93 16 12 N -0.57 -29.69 5.29 -306.99 -1.62 -31.32 16 13 C -0.34 -19.31 9.68 84.04 0.81 -18.49 16 14 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 15 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 16 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 17 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 N -0.71 -8.51 4.50 -442.53 -1.99 -10.50 16 22 C 0.51 9.70 6.92 87.66 0.61 10.30 16 23 O -0.58 -17.38 16.19 15.67 0.25 -17.13 16 24 C 0.05 0.74 3.84 30.22 0.12 0.86 16 25 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 26 C -0.14 -0.94 6.61 31.58 0.21 -0.73 16 27 C -0.15 -1.08 7.15 31.90 0.23 -0.85 16 28 C 0.03 0.38 7.72 72.67 0.56 0.94 16 29 O -0.39 -7.88 10.73 -130.26 -1.40 -9.28 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.85 7.75 -2.39 -0.02 0.83 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.34 11.34 8.43 -89.70 -0.76 10.58 16 42 H 0.10 3.23 8.14 -2.39 -0.02 3.22 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.40 19.49 7.90 -92.70 -0.73 18.76 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 46 H 0.42 2.38 8.60 -92.71 -0.80 1.59 16 47 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 48 H 0.08 0.58 7.69 -2.38 -0.02 0.56 16 49 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 50 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -79.42 427.00 -1.06 -80.49 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -1.36 Total: 37.19 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.97 Total: 14.75 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -6.51 Total: -116.00 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -1.19 Total: -61.33 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -79.42 -1.06 -80.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168961104.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.487 kcal (2) G-P(sol) polarization free energy of solvation -79.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds