Wall clock time and date at job start Wed Apr 1 2020 01:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 5 5 C 1.52997 * 109.47179 * 174.99859 * 4 2 1 6 6 C 1.52998 * 109.47032 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47368 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47599 * 179.97438 * 7 6 5 9 9 C 1.46895 * 111.00270 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47190 * 179.97438 * 9 8 7 11 11 O 1.21295 * 120.00210 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99953 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99809 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00219 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99793 * 180.02562 * 13 12 10 16 16 N 1.31414 * 120.00274 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47482 * 89.99954 * 17 15 13 19 19 H 1.48505 * 109.47325 * 210.00009 * 17 15 13 20 20 H 1.48500 * 109.47310 * 329.99604 * 17 15 13 21 21 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 22 22 C 1.34773 * 119.99968 * 275.00042 * 21 2 1 23 23 O 1.21283 * 120.00360 * 359.73034 * 22 21 2 24 24 C 1.50706 * 120.00081 * 180.02562 * 22 21 2 25 25 H 1.09003 * 110.45298 * 302.33439 * 24 22 21 26 26 C 1.54510 * 110.51238 * 179.72629 * 24 22 21 27 27 C 1.54480 * 104.06228 * 241.35555 * 26 24 22 28 28 O 1.44422 * 104.80273 * 23.97864 * 27 26 24 29 29 C 1.44424 * 105.27891 * 319.48965 * 28 27 26 30 30 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 32 32 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 33 33 H 1.09001 * 109.47417 * 295.00510 * 4 2 1 34 34 H 1.09007 * 109.46847 * 54.99961 * 4 2 1 35 35 H 1.09005 * 109.47256 * 300.00163 * 5 4 2 36 36 H 1.08997 * 109.47189 * 60.00256 * 5 4 2 37 37 H 1.09001 * 109.47211 * 300.00435 * 6 5 4 38 38 H 1.08997 * 109.47204 * 59.99923 * 6 5 4 39 39 H 1.09005 * 109.46946 * 299.99837 * 7 6 5 40 40 H 1.08997 * 109.47163 * 59.99723 * 7 6 5 41 41 H 1.00902 * 110.99868 * 303.95573 * 8 7 6 42 42 H 1.08998 * 109.47318 * 300.00337 * 9 8 7 43 43 H 1.09004 * 109.46766 * 60.00269 * 9 8 7 44 44 H 0.97005 * 120.00183 * 0.02562 * 12 10 9 45 45 H 0.97001 * 120.00246 * 180.02562 * 16 15 13 46 46 H 0.96998 * 119.99507 * 95.00898 * 21 2 1 47 47 H 1.08995 * 110.50950 * 0.02562 * 26 24 22 48 48 H 1.08997 * 110.50962 * 122.70907 * 26 24 22 49 49 H 1.08996 * 110.37151 * 142.81700 * 27 26 24 50 50 H 1.09003 * 110.36744 * 265.15214 * 27 26 24 51 51 H 1.09011 * 110.37403 * 281.68238 * 29 28 27 52 52 H 1.08993 * 110.37689 * 159.34588 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3134 6 6 4.0750 -1.3341 -2.5629 7 6 5.5998 -1.2266 -2.6270 8 7 6.0896 -1.9192 -3.8263 9 6 7.5532 -1.8361 -3.9214 10 6 8.0177 -2.5567 -5.1608 11 8 7.2091 -3.0868 -5.8932 12 7 9.3316 -2.6110 -5.4561 13 6 9.7541 -3.2661 -6.5839 14 1 9.0341 -3.7382 -7.2360 15 6 11.1088 -3.3226 -6.8880 16 7 11.9849 -2.7486 -6.0944 17 14 11.6845 -4.2145 -8.4251 18 1 11.7222 -3.2632 -9.5647 19 1 13.0437 -4.7675 -8.1968 20 1 10.7454 -5.3221 -8.7358 21 7 2.0183 -0.6905 1.1963 22 6 2.1469 -0.0181 2.3572 23 8 1.8632 1.1599 2.4104 24 6 2.6497 -0.7282 3.5877 25 1 2.0114 -1.5798 3.8236 26 6 2.7176 0.2458 4.7852 27 6 4.2137 0.2642 5.1696 28 8 4.9091 -0.1239 3.9648 29 6 4.1128 -1.1830 3.3902 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7518 -1.7716 -1.2054 34 1 1.6055 -0.2619 -2.1369 35 1 3.8533 0.4370 -1.3572 36 1 3.9995 -1.0727 -0.4257 37 1 3.7866 -2.3844 -2.5196 38 1 3.6404 -0.8743 -3.4505 39 1 5.8885 -0.1764 -2.6701 40 1 6.0341 -1.6867 -1.7394 41 1 5.7799 -2.8794 -3.8412 42 1 7.8550 -0.7901 -3.9741 43 1 8.0013 -2.2998 -3.0426 44 1 9.9783 -2.1867 -4.8707 45 1 12.9306 -2.7878 -6.3069 46 1 2.2490 -1.6317 1.1528 47 1 2.3871 1.2408 4.4873 48 1 2.1148 -0.1254 5.6140 49 1 4.5145 1.2662 5.4754 50 1 4.4091 -0.4518 5.9680 51 1 4.2928 -2.1210 3.9157 52 1 4.3362 -1.2927 2.3291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169610636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:12 Heat of formation + Delta-G solvation = -142.216342 kcal Electronic energy + Delta-G solvation = -29015.128659 eV Core-core repulsion = 24820.573526 eV Total energy + Delta-G solvation = -4194.555133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90472 -39.01472 -38.30012 -37.22462 -35.87911 -33.98439 -33.43452 -32.77336 -31.39896 -31.15625 -29.48455 -28.64675 -26.19722 -24.54713 -24.09473 -23.06233 -22.39832 -21.23680 -21.07652 -20.48064 -19.18265 -17.94749 -17.84971 -16.97491 -16.87707 -16.20553 -16.14278 -15.75471 -15.45401 -15.05301 -14.82933 -14.54807 -14.43671 -14.36605 -14.13891 -13.74303 -13.52260 -13.33380 -13.17330 -13.06356 -12.68373 -12.38968 -12.23887 -12.19904 -11.95500 -11.91434 -11.75807 -11.56094 -11.45932 -11.43284 -11.33804 -11.15836 -11.02138 -10.81569 -10.67677 -10.48235 -10.38397 -10.20313 -10.00629 -9.49549 -9.47746 -8.43775 -8.02366 -7.93976 -6.40209 -3.81085 2.20478 2.70534 3.19000 3.27368 3.33216 3.48241 3.87811 3.92768 4.04848 4.18114 4.24899 4.36403 4.51617 4.59675 4.62744 4.68933 4.70002 4.85461 4.95486 5.03737 5.05184 5.12732 5.13113 5.21398 5.24843 5.26341 5.29666 5.32895 5.35203 5.49643 5.53704 5.60852 5.66839 5.70201 5.75184 5.79976 5.85303 5.90375 6.02242 6.10713 6.19528 6.22885 6.27159 6.31211 7.07071 7.26694 7.56524 7.70863 7.81536 8.08028 8.63060 9.19335 9.56118 10.07696 10.77560 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.001571 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.918941 B =17817.320295 C =19288.699700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.116 4.116 7 C 0.059 3.941 8 N -0.671 5.671 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.021 3.979 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 N -0.723 5.723 22 C 0.524 3.476 23 O -0.533 6.533 24 C -0.149 4.149 25 H 0.111 0.889 26 C -0.147 4.147 27 C 0.045 3.955 28 O -0.368 6.368 29 C 0.055 3.945 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.348 0.652 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.400 0.600 47 H 0.100 0.900 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.061 0.939 51 H 0.073 0.927 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.867 3.954 23.772 31.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 N -0.375 5.375 22 C 0.310 3.690 23 O -0.409 6.409 24 C -0.171 4.171 25 H 0.129 0.871 26 C -0.185 4.185 27 C -0.032 4.032 28 O -0.286 6.286 29 C -0.022 4.022 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.167 0.833 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.226 0.774 45 H 0.081 0.919 46 H 0.234 0.766 47 H 0.119 0.881 48 H 0.100 0.900 49 H 0.113 0.887 50 H 0.079 0.921 51 H 0.091 0.909 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.303 5.091 22.778 31.601 hybrid contribution 0.976 -1.390 0.401 1.745 sum -20.327 3.701 23.180 31.052 Atomic orbital electron populations 1.22172 0.95236 1.02115 1.02620 1.21053 0.93883 0.97764 0.83723 0.89261 1.21921 0.96426 1.01064 0.97047 1.21553 0.94508 1.01306 0.98143 1.21551 0.95159 1.00688 0.98041 1.21975 0.94779 0.99519 0.90810 1.60060 1.09695 1.21677 1.38865 1.21668 0.88505 1.01242 0.96802 1.19835 0.83319 0.85872 0.88344 1.90516 1.53357 1.50590 1.52349 1.41872 1.05438 1.48924 1.23861 1.19710 0.91973 1.30191 1.01036 0.87922 1.25270 0.95625 0.97865 0.99242 1.69615 1.02516 1.44359 1.37845 0.85848 0.77845 0.79499 0.81027 1.20388 1.20951 1.19446 1.46092 1.67615 1.14034 1.09742 1.20268 0.77055 0.87243 0.84408 1.90683 1.49816 1.15807 1.84626 1.22757 0.99292 1.00277 0.94726 0.87101 1.23010 0.97543 1.01783 0.96165 1.23472 0.90569 1.01267 0.87918 1.89202 1.47392 1.53400 1.38646 1.23405 0.86996 0.91443 1.00364 0.92462 0.92264 0.91409 0.91267 0.89977 0.91673 0.92177 0.92098 0.90850 0.91247 0.95814 0.83323 0.89651 0.93978 0.77445 0.91881 0.76606 0.88124 0.90000 0.88712 0.92053 0.90934 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.16 0.35 -0.70 16 2 C 0.14 0.97 2.58 -67.93 -0.18 0.80 16 3 H 0.09 0.82 7.57 -51.93 -0.39 0.43 16 4 C -0.13 -0.78 4.75 -26.73 -0.13 -0.91 16 5 C -0.12 -0.90 5.10 -26.73 -0.14 -1.04 16 6 C -0.12 -1.14 5.47 -26.73 -0.15 -1.29 16 7 C 0.06 0.72 5.69 -3.83 -0.02 0.70 16 8 N -0.67 -11.08 6.13 -115.06 -0.70 -11.79 16 9 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 10 C 0.44 10.64 7.82 -10.99 -0.09 10.55 16 11 O -0.58 -16.14 15.78 5.54 0.09 -16.05 16 12 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 13 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 14 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 15 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 17 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 N -0.72 -4.49 4.33 -53.80 -0.23 -4.73 16 22 C 0.52 4.40 7.04 -10.98 -0.08 4.33 16 23 O -0.53 -6.61 14.94 5.56 0.08 -6.53 16 24 C -0.15 -0.86 3.51 -90.20 -0.32 -1.18 16 25 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 26 C -0.15 -0.92 6.67 -25.16 -0.17 -1.09 16 27 C 0.04 0.29 7.63 37.93 0.29 0.58 16 28 O -0.37 -3.49 11.65 -35.23 -0.41 -3.90 16 29 C 0.06 0.34 7.17 37.93 0.27 0.62 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.44 7.75 -51.93 -0.40 0.04 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.40 1.53 8.60 -40.82 -0.35 1.18 16 47 H 0.10 0.86 6.50 -51.93 -0.34 0.53 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 51 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 52 H 0.10 0.56 7.71 -51.93 -0.40 0.16 16 LS Contribution 424.65 15.07 6.40 6.40 Total: -1.00 -34.94 424.65 -8.98 -43.93 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -9.24 Total: 11.02 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.61 Total: 4.14 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.27 Total: -55.19 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.24 Total: -26.48 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -34.94 -8.98 -43.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169610636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.291 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds