Wall clock time and date at job start Wed Apr 1 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 5 5 C 1.52997 * 109.47179 * 174.99859 * 4 2 1 6 6 C 1.52998 * 109.47032 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47368 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47599 * 179.97438 * 7 6 5 9 9 C 1.46895 * 111.00270 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47190 * 179.97438 * 9 8 7 11 11 O 1.21295 * 120.00210 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99953 * 179.97438 * 10 9 8 13 13 C 1.37097 * 119.99809 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00219 * 0.02562 * 13 12 10 15 15 C 1.38949 * 119.99793 * 180.02562 * 13 12 10 16 16 N 1.31414 * 120.00274 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99941 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47482 * 89.99954 * 17 15 13 19 19 H 1.48505 * 109.47325 * 210.00009 * 17 15 13 20 20 H 1.48500 * 109.47310 * 329.99604 * 17 15 13 21 21 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 22 22 C 1.34773 * 119.99968 * 275.00042 * 21 2 1 23 23 O 1.21283 * 120.00360 * 359.73034 * 22 21 2 24 24 C 1.50706 * 120.00081 * 180.02562 * 22 21 2 25 25 H 1.09003 * 110.45298 * 302.33439 * 24 22 21 26 26 C 1.54510 * 110.51238 * 179.72629 * 24 22 21 27 27 C 1.54480 * 104.06228 * 241.35555 * 26 24 22 28 28 O 1.44422 * 104.80273 * 23.97864 * 27 26 24 29 29 C 1.44424 * 105.27891 * 319.48965 * 28 27 26 30 30 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 32 32 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 33 33 H 1.09001 * 109.47417 * 295.00510 * 4 2 1 34 34 H 1.09007 * 109.46847 * 54.99961 * 4 2 1 35 35 H 1.09005 * 109.47256 * 300.00163 * 5 4 2 36 36 H 1.08997 * 109.47189 * 60.00256 * 5 4 2 37 37 H 1.09001 * 109.47211 * 300.00435 * 6 5 4 38 38 H 1.08997 * 109.47204 * 59.99923 * 6 5 4 39 39 H 1.09005 * 109.46946 * 299.99837 * 7 6 5 40 40 H 1.08997 * 109.47163 * 59.99723 * 7 6 5 41 41 H 1.00902 * 110.99868 * 303.95573 * 8 7 6 42 42 H 1.08998 * 109.47318 * 300.00337 * 9 8 7 43 43 H 1.09004 * 109.46766 * 60.00269 * 9 8 7 44 44 H 0.97005 * 120.00183 * 0.02562 * 12 10 9 45 45 H 0.97001 * 120.00246 * 180.02562 * 16 15 13 46 46 H 0.96998 * 119.99507 * 95.00898 * 21 2 1 47 47 H 1.08995 * 110.50950 * 0.02562 * 26 24 22 48 48 H 1.08997 * 110.50962 * 122.70907 * 26 24 22 49 49 H 1.08996 * 110.37151 * 142.81700 * 27 26 24 50 50 H 1.09003 * 110.36744 * 265.15214 * 27 26 24 51 51 H 1.09011 * 110.37403 * 281.68238 * 29 28 27 52 52 H 1.08993 * 110.37689 * 159.34588 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3134 6 6 4.0750 -1.3341 -2.5629 7 6 5.5998 -1.2266 -2.6270 8 7 6.0896 -1.9192 -3.8263 9 6 7.5532 -1.8361 -3.9214 10 6 8.0177 -2.5567 -5.1608 11 8 7.2091 -3.0868 -5.8932 12 7 9.3316 -2.6110 -5.4561 13 6 9.7541 -3.2661 -6.5839 14 1 9.0341 -3.7382 -7.2360 15 6 11.1088 -3.3226 -6.8880 16 7 11.9849 -2.7486 -6.0944 17 14 11.6845 -4.2145 -8.4251 18 1 11.7222 -3.2632 -9.5647 19 1 13.0437 -4.7675 -8.1968 20 1 10.7454 -5.3221 -8.7358 21 7 2.0183 -0.6905 1.1963 22 6 2.1469 -0.0181 2.3572 23 8 1.8632 1.1599 2.4104 24 6 2.6497 -0.7282 3.5877 25 1 2.0114 -1.5798 3.8236 26 6 2.7176 0.2458 4.7852 27 6 4.2137 0.2642 5.1696 28 8 4.9091 -0.1239 3.9648 29 6 4.1128 -1.1830 3.3902 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7518 -1.7716 -1.2054 34 1 1.6055 -0.2619 -2.1369 35 1 3.8533 0.4370 -1.3572 36 1 3.9995 -1.0727 -0.4257 37 1 3.7866 -2.3844 -2.5196 38 1 3.6404 -0.8743 -3.4505 39 1 5.8885 -0.1764 -2.6701 40 1 6.0341 -1.6867 -1.7394 41 1 5.7799 -2.8794 -3.8412 42 1 7.8550 -0.7901 -3.9741 43 1 8.0013 -2.2998 -3.0426 44 1 9.9783 -2.1867 -4.8707 45 1 12.9306 -2.7878 -6.3069 46 1 2.2490 -1.6317 1.1528 47 1 2.3871 1.2408 4.4873 48 1 2.1148 -0.1254 5.6140 49 1 4.5145 1.2662 5.4754 50 1 4.4091 -0.4518 5.9680 51 1 4.2928 -2.1210 3.9157 52 1 4.3362 -1.2927 2.3291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169610636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:10 Heat of formation + Delta-G solvation = -169.095709 kcal Electronic energy + Delta-G solvation = -29016.294236 eV Core-core repulsion = 24820.573526 eV Total energy + Delta-G solvation = -4195.720710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48605 -40.17117 -39.57512 -38.03760 -36.95909 -35.91571 -34.37935 -33.42148 -33.24101 -31.99717 -30.02651 -29.60736 -27.64424 -25.88071 -24.90998 -23.83648 -23.14396 -22.07342 -21.66669 -21.03944 -21.02474 -19.90549 -18.48545 -17.81783 -17.55829 -17.39289 -17.14744 -16.68574 -16.49167 -16.05741 -15.98527 -15.86227 -15.59504 -15.23424 -15.14742 -14.91917 -14.82139 -14.34926 -13.98223 -13.70585 -13.63803 -13.48371 -13.34943 -13.16229 -12.96707 -12.86628 -12.77696 -12.46277 -12.42818 -12.41235 -12.30146 -12.12910 -12.10697 -11.92234 -11.84203 -11.55577 -11.51610 -11.42601 -11.06618 -10.59296 -10.36146 -10.08016 -10.02735 -9.32086 -8.47204 -5.96422 1.38203 1.41930 1.54935 1.59147 2.03678 2.17752 2.29054 2.91969 3.02149 3.19800 3.40972 3.49691 3.70647 3.79347 3.93194 4.00770 4.06332 4.17728 4.23038 4.27525 4.29999 4.35551 4.42776 4.46640 4.52858 4.55623 4.61279 4.64240 4.69911 4.75812 4.77832 4.81894 4.85930 4.89852 4.94464 4.99314 5.08382 5.17476 5.19600 5.29621 5.39426 5.40241 5.49374 5.59411 5.80541 5.89812 6.11416 6.43733 6.55890 6.59045 7.11441 7.25717 7.54832 8.09890 8.70182 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.001571 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.918941 B =17817.320295 C =19288.699700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.062 0.938 4 C -0.117 4.117 5 C -0.110 4.110 6 C -0.108 4.108 7 C 0.059 3.941 8 N -0.686 5.686 9 C 0.064 3.936 10 C 0.437 3.563 11 O -0.623 6.623 12 N -0.573 5.573 13 C -0.336 4.336 14 H 0.080 0.920 15 C -0.014 4.014 16 N -0.920 5.920 17 Si 0.995 3.005 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.272 1.272 21 N -0.710 5.710 22 C 0.518 3.482 23 O -0.582 6.582 24 C -0.142 4.142 25 H 0.146 0.854 26 C -0.147 4.147 27 C 0.041 3.959 28 O -0.406 6.406 29 C 0.052 3.948 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.345 0.655 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.414 0.586 47 H 0.070 0.930 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.160 2.487 24.709 32.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.080 0.920 4 C -0.155 4.155 5 C -0.148 4.148 6 C -0.146 4.146 7 C -0.070 4.070 8 N -0.319 5.319 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.098 0.902 15 C -0.214 4.214 16 N -0.561 5.561 17 Si 0.819 3.181 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.197 1.197 21 N -0.363 5.363 22 C 0.305 3.695 23 O -0.462 6.462 24 C -0.164 4.164 25 H 0.163 0.837 26 C -0.185 4.185 27 C -0.036 4.036 28 O -0.325 6.325 29 C -0.025 4.025 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.163 0.837 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.251 0.749 47 H 0.089 0.911 48 H 0.125 0.875 49 H 0.107 0.893 50 H 0.102 0.898 51 H 0.117 0.883 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.590 3.613 23.735 32.288 hybrid contribution 1.039 -0.902 0.131 1.382 sum -20.550 2.710 23.867 31.611 Atomic orbital electron populations 1.22113 0.94629 1.02853 1.01979 1.20959 0.94302 0.96639 0.84377 0.91994 1.21840 0.95121 1.02007 0.96531 1.21472 0.95603 1.00316 0.97389 1.21477 0.93285 1.01365 0.98486 1.22081 0.96377 0.98928 0.89587 1.60075 1.08474 1.21821 1.41493 1.21529 0.89882 1.01172 0.94243 1.20882 0.82363 0.84853 0.89464 1.90482 1.54183 1.52128 1.54180 1.41948 1.06310 1.49188 1.23587 1.19690 0.92401 1.32080 1.02343 0.90242 1.26078 0.95144 0.98099 1.02039 1.69677 1.02958 1.44521 1.38974 0.84898 0.77628 0.78260 0.77361 1.19686 1.19467 1.19667 1.46012 1.66620 1.14636 1.08991 1.20816 0.76350 0.86803 0.85542 1.90669 1.52058 1.17997 1.85447 1.22813 0.99707 1.00820 0.93022 0.83674 1.22991 0.97693 1.00562 0.97249 1.23612 0.90478 1.01740 0.87733 1.89155 1.48783 1.54673 1.39887 1.23598 0.86538 0.91654 1.00662 0.90936 0.94183 0.90820 0.89453 0.89785 0.92874 0.91382 0.91246 0.91970 0.91385 0.94427 0.83668 0.88212 0.91643 0.76979 0.91264 0.74855 0.91083 0.87526 0.89251 0.89816 0.88334 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 71.98 0.68 -1.20 16 2 C 0.14 1.85 2.58 44.99 0.12 1.97 16 3 H 0.06 1.18 7.57 -2.39 -0.02 1.16 16 4 C -0.12 -1.22 4.75 30.59 0.15 -1.08 16 5 C -0.11 -1.51 5.10 30.59 0.16 -1.35 16 6 C -0.11 -1.93 5.47 30.59 0.17 -1.76 16 7 C 0.06 1.35 5.69 86.30 0.49 1.84 16 8 N -0.69 -21.87 6.13 -517.94 -3.17 -25.05 16 9 C 0.06 2.26 6.17 85.56 0.53 2.79 16 10 C 0.44 21.20 7.82 87.66 0.69 21.89 16 11 O -0.62 -35.05 15.78 -3.08 -0.05 -35.09 16 12 N -0.57 -29.91 5.29 -306.98 -1.62 -31.54 16 13 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 14 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 15 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 16 N -0.92 -50.07 13.05 21.66 0.28 -49.78 16 17 Si 1.00 43.13 29.55 68.60 2.03 45.15 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 N -0.71 -7.84 4.33 -442.53 -1.92 -9.76 16 22 C 0.52 8.41 7.04 87.66 0.62 9.03 16 23 O -0.58 -15.07 14.94 -3.04 -0.05 -15.11 16 24 C -0.14 -1.39 3.51 -10.52 -0.04 -1.43 16 25 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 26 C -0.15 -1.71 6.67 31.61 0.21 -1.50 16 27 C 0.04 0.50 7.63 72.49 0.55 1.05 16 28 O -0.41 -7.41 11.65 -148.98 -1.74 -9.15 16 29 C 0.05 0.54 7.17 72.48 0.52 1.06 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.07 0.84 7.75 -2.39 -0.02 0.82 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.34 11.27 8.43 -89.69 -0.76 10.52 16 42 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.40 19.64 7.90 -92.70 -0.73 18.91 16 45 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.41 2.09 8.60 -92.71 -0.80 1.29 16 47 H 0.07 1.28 6.50 -2.39 -0.02 1.27 16 48 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 52 H 0.09 0.94 7.71 -2.39 -0.02 0.92 16 Total: -1.00 -77.83 424.65 -1.47 -79.30 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: -1.36 Total: 38.47 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 6.12 Total: 12.55 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -6.43 Total: -116.12 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -1.83 Total: -59.35 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -77.83 -1.47 -79.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169610636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.794 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds