Wall clock time and date at job start Wed Apr 1 2020 01:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 C 1.53005 * 109.46782 * 240.00369 * 2 1 3 5 5 C 1.53001 * 109.46665 * 174.99693 * 4 2 1 6 6 C 1.53007 * 109.46918 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47288 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47042 * 180.02562 * 7 6 5 9 9 C 1.46909 * 110.99640 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46733 * 180.02562 * 9 8 7 11 11 O 1.21294 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99780 * 180.02562 * 10 9 8 13 13 C 1.37099 * 120.00003 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00337 * 359.97438 * 13 12 10 15 15 C 1.38956 * 120.00037 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99969 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47343 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47118 * 119.99649 * 17 15 13 20 20 H 1.48502 * 109.47044 * 239.99889 * 17 15 13 21 21 N 1.46491 * 109.47204 * 120.00732 * 2 1 3 22 22 C 1.34779 * 119.99964 * 274.99759 * 21 2 1 23 23 O 1.21284 * 119.99877 * 0.02562 * 22 21 2 24 24 C 1.50697 * 120.00115 * 180.02562 * 22 21 2 25 25 H 1.08995 * 110.56688 * 57.32012 * 24 22 21 26 26 C 1.54517 * 110.51149 * 180.02562 * 24 22 21 27 27 C 1.54481 * 104.06349 * 118.64637 * 26 24 22 28 28 O 1.44422 * 104.80535 * 23.97783 * 27 26 24 29 29 C 1.44433 * 105.27452 * 319.49061 * 28 27 26 30 30 H 1.09004 * 109.47147 * 59.99187 * 1 2 3 31 31 H 1.09001 * 109.47599 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47394 * 299.99733 * 1 2 3 33 33 H 1.08992 * 109.47280 * 294.99769 * 4 2 1 34 34 H 1.09001 * 109.47342 * 55.00601 * 4 2 1 35 35 H 1.08996 * 109.48044 * 300.00006 * 5 4 2 36 36 H 1.09006 * 109.47203 * 60.00442 * 5 4 2 37 37 H 1.08989 * 109.47340 * 300.00820 * 6 5 4 38 38 H 1.09006 * 109.46592 * 60.00351 * 6 5 4 39 39 H 1.08998 * 109.47032 * 300.00855 * 7 6 5 40 40 H 1.08997 * 109.46826 * 60.00410 * 7 6 5 41 41 H 1.00896 * 111.00511 * 303.95563 * 8 7 6 42 42 H 1.08991 * 109.46975 * 299.99918 * 9 8 7 43 43 H 1.08996 * 109.46940 * 60.00182 * 9 8 7 44 44 H 0.97001 * 120.00595 * 0.02562 * 12 10 9 45 45 H 0.96996 * 120.00216 * 180.02562 * 16 15 13 46 46 H 0.97002 * 120.00581 * 95.00152 * 21 2 1 47 47 H 1.08996 * 110.50794 * 237.29039 * 26 24 22 48 48 H 1.08994 * 110.50968 * 359.97438 * 26 24 22 49 49 H 1.08995 * 110.37274 * 142.81171 * 27 26 24 50 50 H 1.09001 * 110.36427 * 265.14751 * 27 26 24 51 51 H 1.08997 * 110.37115 * 281.68143 * 29 28 27 52 52 H 1.08995 * 110.37312 * 159.34452 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 6 4.0748 -1.3349 -2.5628 7 6 5.5997 -1.2275 -2.6270 8 7 6.0892 -1.9198 -3.8265 9 6 7.5530 -1.8378 -3.9211 10 6 8.0172 -2.5570 -5.1613 11 8 7.2084 -3.0855 -5.8945 12 7 9.3312 -2.6129 -5.4558 13 6 9.7536 -3.2668 -6.5843 14 1 9.0334 -3.7374 -7.2373 15 6 11.1084 -3.3249 -6.8877 16 7 11.9848 -2.7528 -6.0930 17 14 11.6838 -4.2152 -8.4258 18 1 10.5091 -4.7693 -9.1457 19 1 12.4024 -3.2625 -9.3096 20 1 12.5973 -5.3222 -8.0444 21 7 2.0183 -0.6907 1.1960 22 6 2.1471 -0.0185 2.3571 23 8 1.8582 1.1582 2.4117 24 6 2.6500 -0.7288 3.5873 25 1 3.6297 -1.1689 3.4017 26 6 2.7109 0.2432 4.7869 27 6 1.7361 -0.3699 5.8166 28 8 1.6753 -1.7725 5.4777 29 6 1.6456 -1.8141 4.0342 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7516 -1.7714 -1.2058 34 1 1.6054 -0.2616 -2.1371 35 1 3.8532 0.4370 -1.3574 36 1 3.9994 -1.0728 -0.4261 37 1 3.7864 -2.3850 -2.5189 38 1 3.6401 -0.8756 -3.4507 39 1 5.8884 -0.1773 -2.6707 40 1 6.0339 -1.6870 -1.7392 41 1 5.7795 -2.8800 -3.8416 42 1 7.8556 -0.7920 -3.9732 43 1 8.0004 -2.3021 -3.0424 44 1 9.9782 -2.1906 -4.8692 45 1 12.9305 -2.7930 -6.3049 46 1 2.2491 -1.6319 1.1524 47 1 3.7209 0.2840 5.1944 48 1 2.3777 1.2375 4.4899 49 1 2.1216 -0.2403 6.8279 50 1 0.7504 0.0860 5.7240 51 1 0.6460 -1.5798 3.6684 52 1 1.9615 -2.7940 3.6763 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169610637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:17 Heat of formation + Delta-G solvation = -143.414932 kcal Electronic energy + Delta-G solvation = -28700.006341 eV Core-core repulsion = 24505.399233 eV Total energy + Delta-G solvation = -4194.607108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93487 -39.11631 -38.32614 -37.28536 -35.92058 -34.00949 -33.47635 -32.81666 -31.39819 -31.16986 -29.55689 -28.68664 -26.22071 -24.49911 -24.07902 -23.21301 -22.46652 -21.27346 -21.11014 -20.48847 -19.20556 -18.13032 -17.87876 -17.16454 -16.61914 -16.22820 -15.99350 -15.80240 -15.59733 -15.21021 -14.90053 -14.56797 -14.54542 -14.28149 -14.04602 -13.74808 -13.59517 -13.44739 -13.22347 -13.20055 -12.78218 -12.53686 -12.30232 -12.23161 -12.02651 -11.83468 -11.81027 -11.58810 -11.48400 -11.38280 -11.31144 -11.19908 -11.05551 -10.84776 -10.70993 -10.38254 -10.34626 -10.23002 -10.22363 -9.54037 -9.52376 -8.46144 -8.05205 -7.96010 -6.42150 -3.82976 2.13441 2.64316 3.16048 3.26566 3.33940 3.42266 3.85551 3.90662 4.02173 4.16760 4.21671 4.30951 4.47102 4.54646 4.59426 4.65756 4.68589 4.75633 4.92110 5.01039 5.06214 5.10147 5.16110 5.18168 5.22425 5.23680 5.27166 5.31324 5.45154 5.46497 5.50213 5.51899 5.57245 5.65330 5.71335 5.76783 5.81931 5.86477 5.99169 6.05769 6.15474 6.18500 6.19766 6.28605 7.01157 7.23680 7.55038 7.67803 7.74107 8.06394 8.61044 9.17643 9.54164 10.05614 10.75699 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.001400 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.182159 B =19990.604549 C =20897.763887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.670 5.670 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.583 6.583 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.104 0.896 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.282 1.282 21 N -0.721 5.721 22 C 0.523 3.477 23 O -0.535 6.535 24 C -0.148 4.148 25 H 0.112 0.888 26 C -0.147 4.147 27 C 0.044 3.956 28 O -0.371 6.371 29 C 0.058 3.942 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.348 0.652 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.401 0.599 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.009 5.289 22.616 31.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.208 1.208 21 N -0.373 5.373 22 C 0.309 3.691 23 O -0.411 6.411 24 C -0.170 4.170 25 H 0.130 0.870 26 C -0.185 4.185 27 C -0.033 4.033 28 O -0.290 6.290 29 C -0.019 4.019 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.167 0.833 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.235 0.765 47 H 0.100 0.900 48 H 0.120 0.880 49 H 0.114 0.886 50 H 0.080 0.920 51 H 0.082 0.918 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.663 6.154 21.850 31.378 hybrid contribution 1.343 -1.041 0.109 1.703 sum -20.320 5.113 21.959 30.352 Atomic orbital electron populations 1.22177 0.95178 1.02190 1.02656 1.21065 0.93950 0.97722 0.83733 0.89251 1.21924 0.96405 1.01126 0.97032 1.21556 0.94545 1.01225 0.98190 1.21555 0.95146 1.00731 0.98048 1.21971 0.94794 0.99483 0.90816 1.60077 1.09675 1.21724 1.38795 1.21668 0.88505 1.01234 0.96811 1.19829 0.83329 0.85879 0.88349 1.90519 1.53337 1.50609 1.52303 1.41876 1.05411 1.49011 1.23802 1.19767 0.91988 1.30192 1.00948 0.87854 1.25269 0.95615 0.97840 0.99251 1.69620 1.02464 1.44387 1.37866 0.85794 0.78752 0.78820 0.80941 1.19207 1.20732 1.20783 1.46124 1.67352 1.14107 1.09688 1.20291 0.77297 0.87213 0.84325 1.90693 1.49842 1.15956 1.84645 1.22750 1.02001 0.97852 0.94390 0.87037 1.22975 1.01308 1.00736 0.93472 1.23487 0.98935 0.81339 0.99507 1.89157 1.95228 1.24516 1.20067 1.23343 0.97806 0.98716 0.82074 0.91374 0.92398 0.92247 0.91215 0.89949 0.91722 0.92148 0.92060 0.90832 0.91286 0.95854 0.83298 0.89675 0.93988 0.77464 0.91929 0.76479 0.89988 0.87976 0.88638 0.91979 0.91810 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.48 37.16 0.35 -0.64 16 2 C 0.14 0.89 2.57 -67.93 -0.17 0.72 16 3 H 0.09 0.75 7.58 -51.93 -0.39 0.36 16 4 C -0.13 -0.73 4.75 -26.73 -0.13 -0.86 16 5 C -0.12 -0.84 5.10 -26.73 -0.14 -0.98 16 6 C -0.12 -1.10 5.47 -26.73 -0.15 -1.25 16 7 C 0.06 0.70 5.69 -3.83 -0.02 0.68 16 8 N -0.67 -10.86 6.13 -115.07 -0.70 -11.57 16 9 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 10 C 0.44 10.53 7.82 -10.99 -0.09 10.44 16 11 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 12 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 13 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 14 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 15 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 16 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 17 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 N -0.72 -4.11 4.52 -53.81 -0.24 -4.35 16 22 C 0.52 4.03 6.98 -10.99 -0.08 3.96 16 23 O -0.53 -6.13 14.94 5.55 0.08 -6.05 16 24 C -0.15 -0.86 3.51 -90.20 -0.32 -1.18 16 25 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 26 C -0.15 -0.93 6.67 -25.16 -0.17 -1.10 16 27 C 0.04 0.27 7.63 37.93 0.29 0.56 16 28 O -0.37 -2.94 11.65 -35.23 -0.41 -3.35 16 29 C 0.06 0.32 7.17 37.93 0.27 0.59 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.41 7.75 -51.93 -0.40 0.01 16 37 H 0.06 0.56 8.14 -51.94 -0.42 0.14 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.35 5.76 8.43 -39.29 -0.33 5.42 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.40 1.41 8.60 -40.82 -0.35 1.05 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.10 0.80 6.50 -51.93 -0.34 0.46 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.35 7.86 -51.93 -0.41 -0.05 16 52 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 424.93 15.07 6.40 6.40 Total: -1.00 -34.11 424.93 -9.00 -43.10 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -9.24 Total: 10.30 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.61 Total: 3.75 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.28 Total: -54.29 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.24 Total: -25.31 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -34.11 -9.00 -43.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169610637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.311 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds