Wall clock time and date at job start Wed Apr 1 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 C 1.53005 * 109.46782 * 240.00369 * 2 1 3 5 5 C 1.53001 * 109.46665 * 174.99693 * 4 2 1 6 6 C 1.53007 * 109.46918 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47288 * 180.02562 * 6 5 4 8 8 N 1.46893 * 109.47042 * 180.02562 * 7 6 5 9 9 C 1.46909 * 110.99640 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.46733 * 180.02562 * 9 8 7 11 11 O 1.21294 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99780 * 180.02562 * 10 9 8 13 13 C 1.37099 * 120.00003 * 180.02562 * 12 10 9 14 14 H 1.08001 * 120.00337 * 359.97438 * 13 12 10 15 15 C 1.38956 * 120.00037 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99969 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47343 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47118 * 119.99649 * 17 15 13 20 20 H 1.48502 * 109.47044 * 239.99889 * 17 15 13 21 21 N 1.46491 * 109.47204 * 120.00732 * 2 1 3 22 22 C 1.34779 * 119.99964 * 274.99759 * 21 2 1 23 23 O 1.21284 * 119.99877 * 0.02562 * 22 21 2 24 24 C 1.50697 * 120.00115 * 180.02562 * 22 21 2 25 25 H 1.08995 * 110.56688 * 57.32012 * 24 22 21 26 26 C 1.54517 * 110.51149 * 180.02562 * 24 22 21 27 27 C 1.54481 * 104.06349 * 118.64637 * 26 24 22 28 28 O 1.44422 * 104.80535 * 23.97783 * 27 26 24 29 29 C 1.44433 * 105.27452 * 319.49061 * 28 27 26 30 30 H 1.09004 * 109.47147 * 59.99187 * 1 2 3 31 31 H 1.09001 * 109.47599 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47394 * 299.99733 * 1 2 3 33 33 H 1.08992 * 109.47280 * 294.99769 * 4 2 1 34 34 H 1.09001 * 109.47342 * 55.00601 * 4 2 1 35 35 H 1.08996 * 109.48044 * 300.00006 * 5 4 2 36 36 H 1.09006 * 109.47203 * 60.00442 * 5 4 2 37 37 H 1.08989 * 109.47340 * 300.00820 * 6 5 4 38 38 H 1.09006 * 109.46592 * 60.00351 * 6 5 4 39 39 H 1.08998 * 109.47032 * 300.00855 * 7 6 5 40 40 H 1.08997 * 109.46826 * 60.00410 * 7 6 5 41 41 H 1.00896 * 111.00511 * 303.95563 * 8 7 6 42 42 H 1.08991 * 109.46975 * 299.99918 * 9 8 7 43 43 H 1.08996 * 109.46940 * 60.00182 * 9 8 7 44 44 H 0.97001 * 120.00595 * 0.02562 * 12 10 9 45 45 H 0.96996 * 120.00216 * 180.02562 * 16 15 13 46 46 H 0.97002 * 120.00581 * 95.00152 * 21 2 1 47 47 H 1.08996 * 110.50794 * 237.29039 * 26 24 22 48 48 H 1.08994 * 110.50968 * 359.97438 * 26 24 22 49 49 H 1.08995 * 110.37274 * 142.81171 * 27 26 24 50 50 H 1.09001 * 110.36427 * 265.14751 * 27 26 24 51 51 H 1.08997 * 110.37115 * 281.68143 * 29 28 27 52 52 H 1.08995 * 110.37312 * 159.34452 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 6 4.0748 -1.3349 -2.5628 7 6 5.5997 -1.2275 -2.6270 8 7 6.0892 -1.9198 -3.8265 9 6 7.5530 -1.8378 -3.9211 10 6 8.0172 -2.5570 -5.1613 11 8 7.2084 -3.0855 -5.8945 12 7 9.3312 -2.6129 -5.4558 13 6 9.7536 -3.2668 -6.5843 14 1 9.0334 -3.7374 -7.2373 15 6 11.1084 -3.3249 -6.8877 16 7 11.9848 -2.7528 -6.0930 17 14 11.6838 -4.2152 -8.4258 18 1 10.5091 -4.7693 -9.1457 19 1 12.4024 -3.2625 -9.3096 20 1 12.5973 -5.3222 -8.0444 21 7 2.0183 -0.6907 1.1960 22 6 2.1471 -0.0185 2.3571 23 8 1.8582 1.1582 2.4117 24 6 2.6500 -0.7288 3.5873 25 1 3.6297 -1.1689 3.4017 26 6 2.7109 0.2432 4.7869 27 6 1.7361 -0.3699 5.8166 28 8 1.6753 -1.7725 5.4777 29 6 1.6456 -1.8141 4.0342 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7516 -1.7714 -1.2058 34 1 1.6054 -0.2616 -2.1371 35 1 3.8532 0.4370 -1.3574 36 1 3.9994 -1.0728 -0.4261 37 1 3.7864 -2.3850 -2.5189 38 1 3.6401 -0.8756 -3.4507 39 1 5.8884 -0.1773 -2.6707 40 1 6.0339 -1.6870 -1.7392 41 1 5.7795 -2.8800 -3.8416 42 1 7.8556 -0.7920 -3.9732 43 1 8.0004 -2.3021 -3.0424 44 1 9.9782 -2.1906 -4.8692 45 1 12.9305 -2.7930 -6.3049 46 1 2.2491 -1.6319 1.1524 47 1 3.7209 0.2840 5.1944 48 1 2.3777 1.2375 4.4899 49 1 2.1216 -0.2403 6.8279 50 1 0.7504 0.0860 5.7240 51 1 0.6460 -1.5798 3.6684 52 1 1.9615 -2.7940 3.6763 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169610637.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:16 Heat of formation + Delta-G solvation = -169.305370 kcal Electronic energy + Delta-G solvation = -28701.129035 eV Core-core repulsion = 24505.399233 eV Total energy + Delta-G solvation = -4195.729801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.49082 -40.17011 -39.63970 -38.04935 -36.96558 -35.91651 -34.38242 -33.44297 -33.24308 -31.96500 -30.05924 -29.63720 -27.64161 -25.87100 -24.79719 -23.90935 -23.24446 -22.06329 -21.66577 -21.02660 -21.02277 -19.90572 -18.66447 -17.83499 -17.64399 -17.24268 -17.03221 -16.53095 -16.49999 -16.16389 -16.00282 -15.85480 -15.74627 -15.28591 -15.13031 -14.84052 -14.68365 -14.33496 -14.03726 -13.89311 -13.64147 -13.48906 -13.38572 -13.22946 -13.07485 -12.94439 -12.79438 -12.48896 -12.41728 -12.38352 -12.29021 -12.11524 -12.08519 -11.86124 -11.79340 -11.54372 -11.52199 -11.41255 -10.87881 -10.85503 -10.36031 -10.10443 -10.02535 -9.31589 -8.47540 -5.96558 1.36673 1.42144 1.55074 1.56497 2.03804 2.13626 2.29045 2.92542 2.97723 3.19663 3.38426 3.50024 3.72340 3.78657 3.86981 4.01388 4.07150 4.10557 4.22661 4.23254 4.29872 4.30843 4.36387 4.45374 4.53121 4.56352 4.62222 4.68657 4.72872 4.75394 4.78317 4.80907 4.86134 4.94987 4.97710 5.01048 5.01908 5.09558 5.20324 5.29943 5.39589 5.40498 5.50209 5.58200 5.71766 5.90183 6.12034 6.43798 6.52969 6.59087 7.11660 7.21654 7.54999 8.10151 8.70071 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.001400 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.182159 B =19990.604549 C =20897.763887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.109 4.109 7 C 0.059 3.941 8 N -0.687 5.687 9 C 0.065 3.935 10 C 0.436 3.564 11 O -0.624 6.624 12 N -0.573 5.573 13 C -0.336 4.336 14 H 0.079 0.921 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.270 1.270 21 N -0.709 5.709 22 C 0.521 3.479 23 O -0.578 6.578 24 C -0.143 4.143 25 H 0.131 0.869 26 C -0.148 4.148 27 C 0.042 3.958 28 O -0.391 6.391 29 C 0.058 3.942 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.344 0.656 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.415 0.585 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.109 0.891 50 H 0.058 0.942 51 H 0.060 0.940 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.779 4.401 23.217 31.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.069 4.069 8 N -0.319 5.319 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.465 4.465 14 H 0.097 0.903 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.195 1.195 21 N -0.361 5.361 22 C 0.308 3.692 23 O -0.458 6.458 24 C -0.165 4.165 25 H 0.149 0.851 26 C -0.186 4.186 27 C -0.034 4.034 28 O -0.310 6.310 29 C -0.019 4.019 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.163 0.837 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.252 0.748 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.127 0.873 50 H 0.077 0.923 51 H 0.078 0.922 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.425 5.257 22.472 31.491 hybrid contribution 1.230 -0.736 -0.061 1.435 sum -20.195 4.522 22.412 30.505 Atomic orbital electron populations 1.22128 0.94793 1.02804 1.02012 1.20975 0.94190 0.96798 0.84264 0.91514 1.21843 0.95264 1.01937 0.96539 1.21475 0.95473 1.00438 0.97366 1.21487 0.93354 1.01307 0.98581 1.22083 0.96315 0.98982 0.89569 1.60094 1.08461 1.21834 1.41537 1.21527 0.89877 1.01193 0.94183 1.20905 0.82355 0.84834 0.89503 1.90485 1.54186 1.52170 1.54172 1.41946 1.06298 1.49281 1.23504 1.19729 0.92393 1.32112 1.02272 0.90289 1.26056 0.95127 0.98058 1.01998 1.69677 1.02927 1.44540 1.38980 0.84853 0.78048 0.78004 0.77311 1.19762 1.19634 1.19515 1.46041 1.66380 1.14671 1.08959 1.20630 0.76643 0.86731 0.85173 1.90681 1.51851 1.17930 1.85353 1.22764 1.02938 0.97607 0.93151 0.85108 1.22958 1.01840 0.99922 0.93902 1.23558 0.98863 0.80768 1.00210 1.89134 1.95294 1.25219 1.21350 1.23469 0.97624 0.99714 0.81083 0.90773 0.91085 0.94176 0.89651 0.89807 0.92566 0.91232 0.91431 0.92039 0.91240 0.94369 0.83724 0.88148 0.91601 0.76970 0.91274 0.74831 0.88955 0.89863 0.87322 0.92322 0.92159 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 71.98 0.68 -1.10 16 2 C 0.14 1.66 2.57 44.99 0.12 1.78 16 3 H 0.07 1.12 7.58 -2.39 -0.02 1.11 16 4 C -0.12 -1.11 4.75 30.60 0.15 -0.96 16 5 C -0.11 -1.34 5.10 30.60 0.16 -1.18 16 6 C -0.11 -1.84 5.47 30.60 0.17 -1.68 16 7 C 0.06 1.28 5.69 86.30 0.49 1.77 16 8 N -0.69 -21.33 6.13 -517.96 -3.17 -24.50 16 9 C 0.06 2.22 6.17 85.55 0.53 2.75 16 10 C 0.44 20.92 7.82 87.66 0.69 21.60 16 11 O -0.62 -34.81 15.78 -3.07 -0.05 -34.85 16 12 N -0.57 -29.58 5.29 -306.98 -1.62 -31.20 16 13 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 14 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 15 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 16 N -0.92 -49.61 13.05 21.67 0.28 -49.33 16 17 Si 0.99 42.83 29.55 68.60 2.03 44.85 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 N -0.71 -6.95 4.52 -442.55 -2.00 -8.95 16 22 C 0.52 7.67 6.98 87.66 0.61 8.29 16 23 O -0.58 -13.59 14.94 -3.04 -0.05 -13.64 16 24 C -0.14 -1.47 3.51 -10.52 -0.04 -1.50 16 25 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 26 C -0.15 -1.79 6.67 31.61 0.21 -1.58 16 27 C 0.04 0.50 7.63 72.49 0.55 1.05 16 28 O -0.39 -5.70 11.65 -148.98 -1.74 -7.44 16 29 C 0.06 0.55 7.17 72.48 0.52 1.06 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.74 7.75 -2.38 -0.02 0.72 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.34 11.05 8.43 -89.70 -0.76 10.29 16 42 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 45 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.41 1.78 8.60 -92.71 -0.80 0.98 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 1.36 6.50 -2.39 -0.02 1.34 16 49 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.06 0.60 7.86 -2.39 -0.02 0.58 16 52 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -74.74 424.93 -1.56 -76.30 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -1.36 Total: 37.00 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.11 Total: 11.75 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -6.51 Total: -113.97 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -1.83 Total: -55.93 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -74.74 -1.56 -76.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169610637.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.002 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds