Wall clock time and date at job start Wed Apr 1 2020 01:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46595 * 2 1 4 4 C 1.52994 * 109.47193 * 119.99786 * 2 1 3 5 5 C 1.53001 * 109.47280 * 184.99994 * 4 2 1 6 6 C 1.52999 * 109.47377 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47234 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47343 * 179.97438 * 7 6 5 9 9 C 1.46891 * 111.00273 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47405 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99946 * 0.02562 * 10 9 8 12 12 N 1.34784 * 120.00353 * 180.02562 * 10 9 8 13 13 C 1.37091 * 119.99794 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00695 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99579 * 180.02562 * 13 12 10 16 16 N 1.31412 * 119.99931 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47406 * 59.99969 * 17 15 13 19 19 H 1.48501 * 109.47120 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47279 * 299.99641 * 17 15 13 21 21 N 1.46495 * 109.46829 * 239.99908 * 2 1 3 22 22 C 1.34774 * 120.00017 * 85.00084 * 21 2 1 23 23 O 1.21281 * 120.00292 * 359.97438 * 22 21 2 24 24 C 1.50703 * 120.00039 * 179.97438 * 22 21 2 25 25 H 1.09005 * 110.83049 * 303.64345 * 24 22 21 26 26 C 1.54807 * 110.90909 * 180.02562 * 24 22 21 27 27 C 1.54106 * 104.18688 * 220.91968 * 26 24 22 28 28 O 1.43739 * 107.29313 * 357.97161 * 27 26 24 29 29 C 1.44380 * 106.97820 * 26.50894 * 28 27 26 30 30 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47101 * 300.00084 * 1 2 3 32 32 H 1.08998 * 109.47548 * 60.00258 * 1 2 3 33 33 H 1.09001 * 109.47134 * 304.99747 * 4 2 1 34 34 H 1.09000 * 109.47673 * 64.99995 * 4 2 1 35 35 H 1.08996 * 109.47252 * 300.00524 * 5 4 2 36 36 H 1.09007 * 109.46877 * 59.99861 * 5 4 2 37 37 H 1.08994 * 109.47213 * 300.00302 * 6 5 4 38 38 H 1.08999 * 109.46651 * 60.00374 * 6 5 4 39 39 H 1.08996 * 109.47592 * 300.00975 * 7 6 5 40 40 H 1.09007 * 109.46679 * 60.00398 * 7 6 5 41 41 H 1.00900 * 110.99940 * 303.96244 * 8 7 6 42 42 H 1.09003 * 109.47679 * 300.00816 * 9 8 7 43 43 H 1.09005 * 109.47309 * 60.00134 * 9 8 7 44 44 H 0.96998 * 119.99233 * 359.97438 * 12 10 9 45 45 H 0.97006 * 119.99974 * 180.02562 * 16 15 13 46 46 H 0.96997 * 120.00141 * 264.99222 * 21 2 1 47 47 H 1.08997 * 110.48888 * 102.24425 * 26 24 22 48 48 H 1.09000 * 110.48626 * 339.59653 * 26 24 22 49 49 H 1.09004 * 109.87710 * 117.39475 * 27 26 24 50 50 H 1.08997 * 109.87565 * 238.54037 * 27 26 24 51 51 H 1.08998 * 110.61673 * 78.44262 * 29 28 27 52 52 H 1.08994 * 110.62020 * 201.27896 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0748 -1.3339 2.5633 7 6 5.5997 -1.2264 2.6273 8 7 6.0893 -1.9178 3.8274 9 6 7.5528 -1.8347 3.9226 10 6 8.0172 -2.5540 5.1628 11 8 7.2085 -3.0841 5.8951 12 7 9.3311 -2.6082 5.4583 13 6 9.7535 -3.2630 6.5863 14 1 9.0335 -3.7350 7.2383 15 6 11.1081 -3.3184 6.8912 16 7 11.9841 -2.7436 6.0981 17 14 11.6836 -4.2099 8.4284 18 1 11.2734 -5.6353 8.3569 19 1 13.1630 -4.1244 8.5256 20 1 11.0721 -3.5783 9.6252 21 7 2.0183 -0.6906 -1.1961 22 6 2.1470 -0.0183 -2.3571 23 8 1.8581 1.1583 -2.4117 24 6 2.6498 -0.7286 -3.5875 25 1 3.6221 -1.1849 -3.4015 26 6 2.7156 0.2377 -4.7951 27 6 2.1975 -0.6017 -5.9791 28 8 1.9225 -1.9211 -5.4795 29 6 1.6258 -1.7860 -4.0730 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2616 2.1369 34 1 1.7517 -1.7715 1.2057 35 1 3.9995 -1.0727 0.4260 36 1 3.8532 0.4371 1.3573 37 1 3.6402 -0.8740 3.4507 38 1 3.7865 -2.3841 2.5200 39 1 6.0340 -1.6865 1.7398 40 1 5.8884 -0.1762 2.6704 41 1 5.6517 -1.5516 4.6596 42 1 8.0011 -2.2992 3.0443 43 1 7.8548 -0.7886 3.9744 44 1 9.9777 -2.1845 4.8725 45 1 12.9298 -2.7826 6.3107 46 1 2.2490 -1.6317 -1.1526 47 1 3.7427 0.5559 -4.9736 48 1 2.0713 1.1009 -4.6286 49 1 1.2846 -0.1581 -6.3765 50 1 2.9576 -0.6515 -6.7588 51 1 0.6065 -1.4279 -3.9284 52 1 1.7751 -2.7340 -3.5564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169610638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:20 Heat of formation + Delta-G solvation = -143.899883 kcal Electronic energy + Delta-G solvation = -28664.288543 eV Core-core repulsion = 24469.660407 eV Total energy + Delta-G solvation = -4194.628137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88479 -39.15568 -38.32202 -37.28674 -35.91483 -34.00452 -33.46491 -32.82519 -31.40618 -31.16987 -29.61097 -28.68442 -26.21727 -24.53385 -24.08456 -23.07335 -22.43971 -21.26932 -21.11487 -20.56285 -19.20055 -18.12041 -17.87709 -17.19117 -16.68048 -16.17856 -15.93321 -15.80722 -15.52248 -15.18250 -15.00144 -14.54016 -14.49809 -14.23352 -13.98141 -13.73850 -13.72284 -13.47482 -13.29809 -13.18445 -12.84754 -12.53991 -12.37887 -12.19138 -11.97998 -11.89236 -11.72022 -11.61717 -11.51187 -11.37740 -11.31869 -11.16348 -11.02181 -10.85549 -10.70794 -10.44267 -10.26757 -10.23467 -10.21149 -9.53117 -9.50055 -8.45829 -8.04917 -7.95699 -6.41613 -3.82525 2.13564 2.63805 3.20159 3.25754 3.30212 3.38812 3.82273 3.91046 4.02599 4.18694 4.22626 4.32195 4.48008 4.56251 4.59841 4.62988 4.65512 4.73601 4.93684 5.01397 5.05896 5.11274 5.15314 5.16363 5.22945 5.24975 5.27923 5.32482 5.44915 5.45705 5.48498 5.54429 5.60055 5.64081 5.73005 5.77344 5.81662 5.86463 5.99317 6.05828 6.15126 6.20069 6.25247 6.28854 7.02121 7.23999 7.54954 7.67917 7.74858 8.06253 8.61535 9.17777 9.54404 10.06052 10.76046 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.001410 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.659057 B =19859.173024 C =20851.589096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.671 5.671 9 C 0.051 3.949 10 C 0.440 3.560 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.301 4.301 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.932 3.068 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 N -0.721 5.721 22 C 0.525 3.475 23 O -0.536 6.536 24 C -0.149 4.149 25 H 0.114 0.886 26 C -0.143 4.143 27 C 0.046 3.954 28 O -0.373 6.373 29 C 0.061 3.939 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.348 0.652 42 H 0.085 0.915 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.401 0.599 47 H 0.083 0.917 48 H 0.096 0.904 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.065 0.935 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.018 6.702 -21.834 31.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.468 6.468 12 N -0.200 5.200 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.759 3.241 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 N -0.373 5.373 22 C 0.311 3.689 23 O -0.412 6.412 24 C -0.170 4.170 25 H 0.132 0.868 26 C -0.181 4.181 27 C -0.031 4.031 28 O -0.292 6.292 29 C -0.016 4.016 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.167 0.833 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.236 0.764 47 H 0.102 0.898 48 H 0.114 0.886 49 H 0.080 0.920 50 H 0.106 0.894 51 H 0.083 0.917 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.540 6.404 -21.765 31.284 hybrid contribution 1.168 0.532 0.797 1.511 sum -20.372 6.936 -20.968 30.046 Atomic orbital electron populations 1.22178 0.95173 1.02223 1.02627 1.21057 0.93953 0.97681 0.83761 0.89317 1.21923 0.96385 1.01232 0.96958 1.21554 0.94567 1.00982 0.98416 1.21552 0.94954 1.01485 0.97490 1.21971 0.95010 0.95814 0.94283 1.60079 1.04861 1.60042 1.05310 1.21665 0.89020 0.98684 0.98846 1.19829 0.83406 0.86134 0.88053 1.90517 1.53417 1.50494 1.52380 1.41860 1.05438 1.48924 1.23808 1.19664 0.92004 1.30363 1.01007 0.87966 1.25265 0.95603 0.97793 0.99260 1.69608 1.02558 1.44227 1.37946 0.85907 0.77230 0.79803 0.81208 1.19877 1.20976 1.19927 1.46131 1.67313 1.14148 1.09671 1.20201 0.77308 0.87164 0.84237 1.90704 1.49804 1.15938 1.84761 1.22938 1.01959 0.97988 0.94140 0.86829 1.22909 1.03874 0.99150 0.92171 1.23238 1.00404 0.82751 0.96710 1.88906 1.90430 1.27478 1.22393 1.23465 0.97099 0.98603 0.82421 0.92350 0.91425 0.92236 0.90085 0.91069 0.91897 0.91983 0.91975 0.90908 0.91337 0.95797 0.83262 0.89697 0.93980 0.77460 0.91825 0.76397 0.89824 0.88569 0.92019 0.89410 0.91661 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.48 37.16 0.35 -0.64 16 2 C 0.14 0.89 2.57 -67.94 -0.17 0.72 16 3 H 0.09 0.75 7.58 -51.93 -0.39 0.35 16 4 C -0.13 -0.73 4.75 -26.73 -0.13 -0.86 16 5 C -0.12 -0.85 5.10 -26.73 -0.14 -0.98 16 6 C -0.12 -1.11 5.47 -26.73 -0.15 -1.25 16 7 C 0.06 0.70 5.69 -3.83 -0.02 0.68 16 8 N -0.67 -10.89 6.13 -115.06 -0.70 -11.59 16 9 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 10 C 0.44 10.53 7.82 -10.98 -0.09 10.45 16 11 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 12 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 13 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 14 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 15 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 17 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 N -0.72 -4.14 4.53 -53.81 -0.24 -4.39 16 22 C 0.53 4.07 7.11 -10.98 -0.08 3.99 16 23 O -0.54 -6.18 15.12 5.56 0.08 -6.10 16 24 C -0.15 -0.87 3.52 -89.76 -0.32 -1.19 16 25 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 26 C -0.14 -0.89 6.43 -25.20 -0.16 -1.06 16 27 C 0.05 0.27 7.70 37.74 0.29 0.56 16 28 O -0.37 -2.94 11.52 -35.23 -0.41 -3.34 16 29 C 0.06 0.34 7.16 38.21 0.27 0.62 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.44 7.75 -51.93 -0.40 0.03 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.40 1.45 8.60 -40.82 -0.35 1.10 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.74 6.85 -51.93 -0.36 0.38 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.37 8.04 -51.93 -0.42 -0.05 16 52 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 425.48 15.07 6.41 6.41 Total: -1.00 -34.06 425.48 -9.00 -43.06 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -9.27 Total: 10.37 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -0.60 Total: 3.82 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.28 Total: -54.35 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.23 Total: -25.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -34.06 -9.00 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169610638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.841 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds