Wall clock time and date at job start Wed Apr 1 2020 01:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46595 * 2 1 4 4 C 1.52994 * 109.47193 * 119.99786 * 2 1 3 5 5 C 1.53001 * 109.47280 * 184.99994 * 4 2 1 6 6 C 1.52999 * 109.47377 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47234 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47343 * 179.97438 * 7 6 5 9 9 C 1.46891 * 111.00273 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47405 * 180.02562 * 9 8 7 11 11 O 1.21293 * 119.99946 * 0.02562 * 10 9 8 12 12 N 1.34784 * 120.00353 * 180.02562 * 10 9 8 13 13 C 1.37091 * 119.99794 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00695 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99579 * 180.02562 * 13 12 10 16 16 N 1.31412 * 119.99931 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47406 * 59.99969 * 17 15 13 19 19 H 1.48501 * 109.47120 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47279 * 299.99641 * 17 15 13 21 21 N 1.46495 * 109.46829 * 239.99908 * 2 1 3 22 22 C 1.34774 * 120.00017 * 85.00084 * 21 2 1 23 23 O 1.21281 * 120.00292 * 359.97438 * 22 21 2 24 24 C 1.50703 * 120.00039 * 179.97438 * 22 21 2 25 25 H 1.09005 * 110.83049 * 303.64345 * 24 22 21 26 26 C 1.54807 * 110.90909 * 180.02562 * 24 22 21 27 27 C 1.54106 * 104.18688 * 220.91968 * 26 24 22 28 28 O 1.43739 * 107.29313 * 357.97161 * 27 26 24 29 29 C 1.44380 * 106.97820 * 26.50894 * 28 27 26 30 30 H 1.09002 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47101 * 300.00084 * 1 2 3 32 32 H 1.08998 * 109.47548 * 60.00258 * 1 2 3 33 33 H 1.09001 * 109.47134 * 304.99747 * 4 2 1 34 34 H 1.09000 * 109.47673 * 64.99995 * 4 2 1 35 35 H 1.08996 * 109.47252 * 300.00524 * 5 4 2 36 36 H 1.09007 * 109.46877 * 59.99861 * 5 4 2 37 37 H 1.08994 * 109.47213 * 300.00302 * 6 5 4 38 38 H 1.08999 * 109.46651 * 60.00374 * 6 5 4 39 39 H 1.08996 * 109.47592 * 300.00975 * 7 6 5 40 40 H 1.09007 * 109.46679 * 60.00398 * 7 6 5 41 41 H 1.00900 * 110.99940 * 303.96244 * 8 7 6 42 42 H 1.09003 * 109.47679 * 300.00816 * 9 8 7 43 43 H 1.09005 * 109.47309 * 60.00134 * 9 8 7 44 44 H 0.96998 * 119.99233 * 359.97438 * 12 10 9 45 45 H 0.97006 * 119.99974 * 180.02562 * 16 15 13 46 46 H 0.96997 * 120.00141 * 264.99222 * 21 2 1 47 47 H 1.08997 * 110.48888 * 102.24425 * 26 24 22 48 48 H 1.09000 * 110.48626 * 339.59653 * 26 24 22 49 49 H 1.09004 * 109.87710 * 117.39475 * 27 26 24 50 50 H 1.08997 * 109.87565 * 238.54037 * 27 26 24 51 51 H 1.08998 * 110.61673 * 78.44262 * 29 28 27 52 52 H 1.08994 * 110.62020 * 201.27896 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 6 4.0748 -1.3339 2.5633 7 6 5.5997 -1.2264 2.6273 8 7 6.0893 -1.9178 3.8274 9 6 7.5528 -1.8347 3.9226 10 6 8.0172 -2.5540 5.1628 11 8 7.2085 -3.0841 5.8951 12 7 9.3311 -2.6082 5.4583 13 6 9.7535 -3.2630 6.5863 14 1 9.0335 -3.7350 7.2383 15 6 11.1081 -3.3184 6.8912 16 7 11.9841 -2.7436 6.0981 17 14 11.6836 -4.2099 8.4284 18 1 11.2734 -5.6353 8.3569 19 1 13.1630 -4.1244 8.5256 20 1 11.0721 -3.5783 9.6252 21 7 2.0183 -0.6906 -1.1961 22 6 2.1470 -0.0183 -2.3571 23 8 1.8581 1.1583 -2.4117 24 6 2.6498 -0.7286 -3.5875 25 1 3.6221 -1.1849 -3.4015 26 6 2.7156 0.2377 -4.7951 27 6 2.1975 -0.6017 -5.9791 28 8 1.9225 -1.9211 -5.4795 29 6 1.6258 -1.7860 -4.0730 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2616 2.1369 34 1 1.7517 -1.7715 1.2057 35 1 3.9995 -1.0727 0.4260 36 1 3.8532 0.4371 1.3573 37 1 3.6402 -0.8740 3.4507 38 1 3.7865 -2.3841 2.5200 39 1 6.0340 -1.6865 1.7398 40 1 5.8884 -0.1762 2.6704 41 1 5.6517 -1.5516 4.6596 42 1 8.0011 -2.2992 3.0443 43 1 7.8548 -0.7886 3.9744 44 1 9.9777 -2.1845 4.8725 45 1 12.9298 -2.7826 6.3107 46 1 2.2490 -1.6317 -1.1526 47 1 3.7427 0.5559 -4.9736 48 1 2.0713 1.1009 -4.6286 49 1 1.2846 -0.1581 -6.3765 50 1 2.9576 -0.6515 -6.7588 51 1 0.6065 -1.4279 -3.9284 52 1 1.7751 -2.7340 -3.5564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169610638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:20 Heat of formation + Delta-G solvation = -169.661147 kcal Electronic energy + Delta-G solvation = -28665.405636 eV Core-core repulsion = 24469.660407 eV Total energy + Delta-G solvation = -4195.745229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44611 -40.16779 -39.68051 -38.05293 -36.96295 -35.91403 -34.37489 -33.44942 -33.24306 -31.97779 -30.11101 -29.63950 -27.63756 -25.87003 -24.85671 -23.80729 -23.16207 -22.06295 -21.66649 -21.10845 -21.02244 -19.90293 -18.65531 -17.85863 -17.64816 -17.28708 -17.01588 -16.54188 -16.44246 -16.10857 -16.01913 -15.85569 -15.71208 -15.32413 -15.16591 -14.68649 -14.55224 -14.40710 -14.20392 -13.93303 -13.67978 -13.51053 -13.36476 -13.30052 -13.07419 -12.94988 -12.78198 -12.44267 -12.43249 -12.37277 -12.31385 -12.13898 -12.11551 -11.82487 -11.79795 -11.57027 -11.50810 -11.40290 -10.87871 -10.75181 -10.35909 -10.09924 -10.02585 -9.32609 -8.46997 -5.96181 1.40132 1.42121 1.53218 1.54475 2.04130 2.12655 2.29283 2.92428 2.94369 3.20047 3.34498 3.49935 3.73721 3.79438 3.88027 4.01237 4.05127 4.11047 4.19474 4.25745 4.29184 4.31911 4.33287 4.46919 4.50752 4.55589 4.62709 4.67720 4.72662 4.75486 4.78859 4.81752 4.89092 4.94050 4.97906 4.99736 5.06537 5.07115 5.21136 5.31066 5.38624 5.40160 5.50113 5.58460 5.78892 5.90004 6.11777 6.41643 6.53106 6.59377 7.11610 7.21603 7.55080 8.10315 8.70078 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.001410 C = 0.001343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.659057 B =19859.173024 C =20851.589096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.109 4.109 7 C 0.059 3.941 8 N -0.685 5.685 9 C 0.064 3.936 10 C 0.436 3.564 11 O -0.624 6.624 12 N -0.573 5.573 13 C -0.338 4.338 14 H 0.079 0.921 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.272 1.272 19 H -0.270 1.270 20 H -0.272 1.272 21 N -0.709 5.709 22 C 0.524 3.476 23 O -0.579 6.579 24 C -0.143 4.143 25 H 0.131 0.869 26 C -0.144 4.144 27 C 0.045 3.955 28 O -0.393 6.393 29 C 0.062 3.938 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.343 0.657 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.415 0.585 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.100 0.900 51 H 0.060 0.940 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.873 6.053 -22.276 31.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.156 4.156 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.070 4.070 8 N -0.317 5.317 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.467 4.467 14 H 0.097 0.903 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.197 1.197 21 N -0.361 5.361 22 C 0.311 3.689 23 O -0.459 6.459 24 C -0.165 4.165 25 H 0.149 0.851 26 C -0.182 4.182 27 C -0.032 4.032 28 O -0.313 6.313 29 C -0.015 4.015 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.161 0.839 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.252 0.748 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.118 0.882 51 H 0.079 0.921 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.389 5.743 -22.229 31.378 hybrid contribution 1.079 0.758 0.910 1.603 sum -20.310 6.500 -21.319 30.153 Atomic orbital electron populations 1.22129 0.94751 1.02824 1.02032 1.20978 0.94222 0.96778 0.84243 0.91489 1.21845 0.95237 1.01940 0.96577 1.21475 0.95501 1.00294 0.97492 1.21485 0.93213 1.01521 0.98507 1.22096 0.96535 0.95829 0.92519 1.60114 1.03684 1.61399 1.06552 1.21532 0.90355 0.98983 0.95939 1.20901 0.82436 0.85120 0.89176 1.90483 1.54260 1.52061 1.54224 1.41934 1.06323 1.49197 1.23519 1.19658 0.92445 1.32268 1.02335 0.90262 1.26057 0.95119 0.98014 1.02018 1.69669 1.02958 1.44382 1.39052 0.84970 0.77304 0.78472 0.77474 1.19687 1.19454 1.19671 1.46057 1.66331 1.14693 1.08981 1.20515 0.76644 0.86667 0.85058 1.90691 1.51830 1.17898 1.85458 1.22940 1.02776 0.97765 0.92983 0.85107 1.22886 1.03909 0.98710 0.92675 1.23314 1.00908 0.82147 0.96820 1.88882 1.90562 1.28320 1.23491 1.23576 0.96703 0.99521 0.81700 0.91087 0.90746 0.94142 0.89707 0.89725 0.91242 0.92575 0.92159 0.91296 0.90605 0.95019 0.83879 0.87895 0.91862 0.76973 0.91262 0.74812 0.89056 0.90420 0.91896 0.88169 0.92123 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.48 71.98 0.68 -1.07 16 2 C 0.14 1.65 2.57 44.99 0.12 1.77 16 3 H 0.07 1.11 7.58 -2.39 -0.02 1.10 16 4 C -0.12 -1.10 4.75 30.59 0.15 -0.96 16 5 C -0.11 -1.34 5.10 30.59 0.16 -1.19 16 6 C -0.11 -1.85 5.47 30.59 0.17 -1.68 16 7 C 0.06 1.28 5.69 86.30 0.49 1.77 16 8 N -0.69 -21.33 6.13 -517.95 -3.17 -24.50 16 9 C 0.06 2.22 6.17 85.56 0.53 2.74 16 10 C 0.44 20.92 7.82 87.65 0.69 21.61 16 11 O -0.62 -34.81 15.78 -3.07 -0.05 -34.86 16 12 N -0.57 -29.58 5.29 -306.98 -1.62 -31.20 16 13 C -0.34 -19.27 9.68 84.04 0.81 -18.46 16 14 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 15 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 16 N -0.92 -49.61 13.05 21.67 0.28 -49.32 16 17 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 N -0.71 -7.07 4.53 -442.55 -2.00 -9.07 16 22 C 0.52 7.77 7.11 87.66 0.62 8.40 16 23 O -0.58 -13.66 15.12 -3.03 -0.05 -13.70 16 24 C -0.14 -1.50 3.52 -10.24 -0.04 -1.54 16 25 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 26 C -0.14 -1.74 6.43 31.59 0.20 -1.53 16 27 C 0.04 0.50 7.70 72.36 0.56 1.06 16 28 O -0.39 -5.71 11.52 -148.98 -1.72 -7.43 16 29 C 0.06 0.60 7.16 72.66 0.52 1.12 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.78 7.75 -2.39 -0.02 0.76 16 36 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.34 11.23 8.43 -89.69 -0.76 10.47 16 42 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.40 19.40 7.90 -92.71 -0.73 18.66 16 45 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 46 H 0.41 1.95 8.60 -92.71 -0.80 1.15 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.08 1.25 6.85 -2.39 -0.02 1.23 16 49 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.06 0.64 8.04 -2.39 -0.02 0.62 16 52 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -74.34 425.48 -1.54 -75.88 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -1.36 Total: 37.53 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.12 Total: 11.85 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -6.52 Total: -114.10 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -1.81 Total: -55.99 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -74.34 -1.54 -75.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169610638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.783 kcal (2) G-P(sol) polarization free energy of solvation -74.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds