Wall clock time and date at job start Wed Apr 1 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47821 * 2 1 4 4 C 1.52996 * 109.47322 * 120.00578 * 2 1 3 5 5 C 1.53006 * 109.47437 * 184.99768 * 4 2 1 6 6 C 1.52992 * 109.47092 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47092 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47138 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99888 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47140 * 179.97438 * 9 8 7 11 11 O 1.21289 * 119.99678 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99518 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00466 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00085 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00498 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99920 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47441 * 89.99762 * 17 15 13 19 19 H 1.48495 * 109.46914 * 210.00201 * 17 15 13 20 20 H 1.48508 * 109.46806 * 329.99819 * 17 15 13 21 21 N 1.46503 * 109.46933 * 240.00275 * 2 1 3 22 22 C 1.34772 * 120.00426 * 85.00111 * 21 2 1 23 23 O 1.21286 * 119.99729 * 359.97438 * 22 21 2 24 24 C 1.50695 * 120.00345 * 180.02562 * 22 21 2 25 25 H 1.09004 * 110.45684 * 57.39422 * 24 22 21 26 26 C 1.54509 * 110.51131 * 179.97438 * 24 22 21 27 27 C 1.54480 * 104.06155 * 118.64457 * 26 24 22 28 28 O 1.44430 * 104.80497 * 23.98102 * 27 26 24 29 29 C 1.44426 * 105.27042 * 319.48706 * 28 27 26 30 30 H 1.08999 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46955 * 299.99792 * 1 2 3 32 32 H 1.09002 * 109.46975 * 59.99684 * 1 2 3 33 33 H 1.08997 * 109.47448 * 64.99806 * 4 2 1 34 34 H 1.09004 * 109.46728 * 304.99405 * 4 2 1 35 35 H 1.08997 * 109.46770 * 59.99623 * 5 4 2 36 36 H 1.08995 * 109.47019 * 299.99837 * 5 4 2 37 37 H 1.08997 * 109.47295 * 60.00344 * 6 5 4 38 38 H 1.09004 * 109.47227 * 299.99732 * 6 5 4 39 39 H 1.08997 * 109.46770 * 60.00022 * 7 6 5 40 40 H 1.08995 * 109.47019 * 300.00236 * 7 6 5 41 41 H 1.00901 * 111.00121 * 56.04666 * 8 7 6 42 42 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 43 43 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 44 44 H 0.96996 * 120.00269 * 359.97438 * 12 10 9 45 45 H 0.97002 * 120.00283 * 180.02562 * 16 15 13 46 46 H 0.97006 * 120.00263 * 265.00029 * 21 2 1 47 47 H 1.09004 * 110.51551 * 237.28726 * 26 24 22 48 48 H 1.08994 * 110.51579 * 0.02562 * 26 24 22 49 49 H 1.09000 * 110.37615 * 142.81176 * 27 26 24 50 50 H 1.09002 * 110.37499 * 265.14644 * 27 26 24 51 51 H 1.08997 * 110.37387 * 281.67480 * 29 28 27 52 52 H 1.09003 * 110.37069 * 159.34172 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6135 1.3136 6 6 4.0748 -1.3343 2.5630 7 6 5.5997 -1.2269 2.6271 8 7 6.0894 -1.9195 3.8265 9 6 7.5530 -1.8365 3.9217 10 6 8.0173 -2.5560 5.1618 11 8 7.2086 -3.0861 5.8939 12 7 9.3312 -2.6102 5.4571 13 6 9.7537 -3.2652 6.5850 14 1 9.0337 -3.7373 7.2370 15 6 11.1083 -3.3217 6.8893 16 7 11.5132 -3.9490 7.9707 17 14 12.3538 -2.5058 5.7613 18 1 12.5689 -1.1018 6.1944 19 1 13.6394 -3.2462 5.8256 20 1 11.8431 -2.5209 4.3668 21 7 2.0183 -0.6906 -1.1962 22 6 2.1470 -0.0183 -2.3572 23 8 1.8582 1.1584 -2.4117 24 6 2.6487 -0.7288 -3.5878 25 1 2.0125 -1.5826 -3.8207 26 6 2.7098 0.2434 -4.7871 27 6 4.2047 0.2664 -5.1759 28 8 4.7332 -0.9845 -4.6841 29 6 4.1140 -1.1781 -3.3938 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7716 1.2054 34 1 1.6054 -0.2618 2.1369 35 1 3.8532 0.4368 1.3573 36 1 3.9995 -1.0729 0.4259 37 1 3.7864 -2.3845 2.5197 38 1 3.6402 -0.8744 3.4506 39 1 5.8885 -0.1768 2.6702 40 1 6.0340 -1.6870 1.7396 41 1 5.7796 -2.8797 3.8414 42 1 8.0011 -2.3002 3.0428 43 1 7.8549 -0.7905 3.9744 44 1 9.9779 -2.1866 4.8714 45 1 12.4589 -3.9881 8.1833 46 1 2.2490 -1.6318 -1.1528 47 1 2.1060 -0.1312 -5.6137 48 1 2.3776 1.2380 -4.4899 49 1 4.3144 0.3251 -6.2588 50 1 4.7086 1.1058 -4.6967 51 1 4.6039 -0.5603 -2.6412 52 1 4.1538 -2.2292 -3.1077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169610639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:24 Heat of formation + Delta-G solvation = -135.991767 kcal Electronic energy + Delta-G solvation = -29001.741924 eV Core-core repulsion = 24807.456709 eV Total energy + Delta-G solvation = -4194.285215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95208 -39.12035 -38.51011 -37.33454 -35.99811 -34.05691 -33.53067 -32.84433 -31.67572 -31.37294 -29.55399 -28.77857 -26.36410 -24.49744 -23.99121 -23.17664 -22.47416 -21.32323 -21.13997 -20.50981 -19.36202 -18.32630 -18.13875 -17.09405 -16.74200 -16.26751 -15.99230 -15.84916 -15.64169 -15.13811 -14.97991 -14.78948 -14.57547 -14.29355 -14.23049 -13.81664 -13.46871 -13.40788 -13.26119 -13.06007 -12.73766 -12.62979 -12.47632 -12.38430 -12.05303 -12.04879 -11.90003 -11.83129 -11.63667 -11.43372 -11.35532 -11.23592 -11.14789 -10.89368 -10.76247 -10.59625 -10.36105 -10.25149 -9.97710 -9.57477 -9.56826 -8.59169 -8.19467 -8.13190 -6.31245 -3.82693 2.10698 2.61596 3.02347 3.07015 3.14956 3.43478 3.74020 3.83824 3.97508 4.10112 4.17053 4.27986 4.38075 4.51361 4.55899 4.60973 4.68971 4.74809 4.85908 4.89289 4.98529 5.07337 5.13651 5.16714 5.17295 5.22685 5.24288 5.28207 5.41181 5.42928 5.45546 5.49114 5.51937 5.60984 5.63172 5.68339 5.74169 5.81881 5.83053 5.93734 6.02130 6.11218 6.17115 6.19809 6.98268 7.11238 7.57667 7.59461 7.71268 8.14399 8.59809 8.94831 9.42370 9.82755 10.81852 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.001668 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.289239 B =16780.633032 C =18486.191152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.089 0.911 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.117 4.117 7 C 0.059 3.941 8 N -0.670 5.670 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.565 6.565 12 N -0.591 5.591 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.881 5.881 17 Si 0.880 3.120 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.270 1.270 21 N -0.721 5.721 22 C 0.523 3.477 23 O -0.535 6.535 24 C -0.148 4.148 25 H 0.110 0.890 26 C -0.147 4.147 27 C 0.043 3.957 28 O -0.370 6.370 29 C 0.057 3.943 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.350 0.650 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.401 0.599 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.063 0.937 51 H 0.065 0.935 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.829 8.235 -26.993 34.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.107 0.893 4 C -0.165 4.165 5 C -0.155 4.155 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.303 5.303 9 C -0.085 4.085 10 C 0.235 3.765 11 O -0.447 6.447 12 N -0.230 5.230 13 C -0.434 4.434 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.521 5.521 17 Si 0.706 3.294 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.195 1.195 21 N -0.373 5.373 22 C 0.308 3.692 23 O -0.411 6.411 24 C -0.169 4.169 25 H 0.128 0.872 26 C -0.185 4.185 27 C -0.033 4.033 28 O -0.289 6.289 29 C -0.020 4.020 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.169 0.831 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.235 0.765 47 H 0.099 0.901 48 H 0.120 0.880 49 H 0.113 0.887 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.353 9.055 -26.055 34.280 hybrid contribution 1.395 -0.405 -1.320 1.963 sum -18.959 8.650 -27.375 34.404 Atomic orbital electron populations 1.22174 0.95149 1.02203 1.02669 1.21065 0.93993 0.97693 0.83712 0.89270 1.21927 0.96360 1.01165 0.97063 1.21552 0.94598 1.01207 0.98152 1.21556 0.95042 1.00821 0.98098 1.21978 0.94913 0.99443 0.90720 1.60052 1.09374 1.21884 1.38983 1.21704 0.88917 1.01227 0.96638 1.19727 0.82866 0.85601 0.88269 1.90560 1.52926 1.49341 1.51850 1.42210 1.05968 1.50663 1.24200 1.19435 0.93501 1.30462 1.00010 0.86285 1.25042 0.96991 0.97456 0.96695 1.69620 1.16283 1.41717 1.24513 0.86667 0.81900 0.80239 0.80545 1.19580 1.20180 1.19540 1.46130 1.67316 1.14112 1.09731 1.20302 0.77254 0.87229 0.84375 1.90694 1.49827 1.15963 1.84656 1.22750 0.99383 1.00397 0.94402 0.87194 1.22974 0.97648 1.01512 0.96328 1.23493 0.92381 0.86983 1.00474 1.89166 1.67153 1.39856 1.32694 1.23353 0.89143 1.02336 0.87171 0.92401 0.91366 0.92224 0.91186 0.89918 0.91734 0.92161 0.91988 0.90764 0.91255 0.95788 0.83102 0.93857 0.89542 0.79686 0.91614 0.76483 0.90099 0.87996 0.88657 0.91877 0.91630 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.48 37.16 0.35 -0.61 16 2 C 0.14 0.85 2.57 -67.93 -0.17 0.68 16 3 H 0.09 0.72 7.58 -51.93 -0.39 0.33 16 4 C -0.13 -0.69 4.75 -26.73 -0.13 -0.81 16 5 C -0.12 -0.78 5.10 -26.73 -0.14 -0.92 16 6 C -0.12 -1.04 5.47 -26.73 -0.15 -1.19 16 7 C 0.06 0.66 5.69 -3.82 -0.02 0.63 16 8 N -0.67 -10.30 6.12 -115.05 -0.70 -11.01 16 9 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 10 C 0.45 10.30 7.82 -10.99 -0.09 10.21 16 11 O -0.56 -15.28 15.78 5.55 0.09 -15.19 16 12 N -0.59 -14.18 5.09 -10.97 -0.06 -14.24 16 13 C -0.31 -8.69 10.16 -14.93 -0.15 -8.85 16 14 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -25.81 13.96 55.50 0.77 -25.04 16 17 Si 0.88 19.42 27.74 -169.99 -4.71 14.71 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.42 6.52 56.52 0.37 -5.06 16 21 N -0.72 -3.89 4.52 -53.81 -0.24 -4.14 16 22 C 0.52 3.89 6.98 -10.99 -0.08 3.81 16 23 O -0.53 -5.99 14.94 5.55 0.08 -5.91 16 24 C -0.15 -0.82 3.51 -90.21 -0.32 -1.14 16 25 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 26 C -0.15 -0.89 6.67 -25.16 -0.17 -1.06 16 27 C 0.04 0.28 7.63 37.93 0.29 0.57 16 28 O -0.37 -3.08 11.65 -35.23 -0.41 -3.49 16 29 C 0.06 0.34 7.17 37.93 0.27 0.61 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.37 7.75 -51.93 -0.40 -0.03 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.35 5.52 8.43 -39.29 -0.33 5.19 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.40 1.29 8.60 -40.82 -0.35 0.93 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.10 0.77 6.50 -51.93 -0.34 0.44 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.42 7.86 -51.93 -0.41 0.01 16 52 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 421.81 15.07 6.36 6.36 Total: -1.00 -35.36 421.81 -8.65 -44.01 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -9.20 Total: 10.20 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.62 Total: 3.75 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.23 Total: -54.42 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.24 Total: -24.60 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -35.36 -8.65 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169610639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.983 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds