Wall clock time and date at job start Wed Apr 1 2020 01:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47821 * 2 1 4 4 C 1.52996 * 109.47322 * 120.00578 * 2 1 3 5 5 C 1.53006 * 109.47437 * 184.99768 * 4 2 1 6 6 C 1.52992 * 109.47092 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.47092 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47138 * 180.02562 * 7 6 5 9 9 C 1.46906 * 110.99888 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47140 * 179.97438 * 9 8 7 11 11 O 1.21289 * 119.99678 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99518 * 180.02562 * 12 10 9 14 14 H 1.07996 * 120.00466 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00085 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00498 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99920 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47441 * 89.99762 * 17 15 13 19 19 H 1.48495 * 109.46914 * 210.00201 * 17 15 13 20 20 H 1.48508 * 109.46806 * 329.99819 * 17 15 13 21 21 N 1.46503 * 109.46933 * 240.00275 * 2 1 3 22 22 C 1.34772 * 120.00426 * 85.00111 * 21 2 1 23 23 O 1.21286 * 119.99729 * 359.97438 * 22 21 2 24 24 C 1.50695 * 120.00345 * 180.02562 * 22 21 2 25 25 H 1.09004 * 110.45684 * 57.39422 * 24 22 21 26 26 C 1.54509 * 110.51131 * 179.97438 * 24 22 21 27 27 C 1.54480 * 104.06155 * 118.64457 * 26 24 22 28 28 O 1.44430 * 104.80497 * 23.98102 * 27 26 24 29 29 C 1.44426 * 105.27042 * 319.48706 * 28 27 26 30 30 H 1.08999 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46955 * 299.99792 * 1 2 3 32 32 H 1.09002 * 109.46975 * 59.99684 * 1 2 3 33 33 H 1.08997 * 109.47448 * 64.99806 * 4 2 1 34 34 H 1.09004 * 109.46728 * 304.99405 * 4 2 1 35 35 H 1.08997 * 109.46770 * 59.99623 * 5 4 2 36 36 H 1.08995 * 109.47019 * 299.99837 * 5 4 2 37 37 H 1.08997 * 109.47295 * 60.00344 * 6 5 4 38 38 H 1.09004 * 109.47227 * 299.99732 * 6 5 4 39 39 H 1.08997 * 109.46770 * 60.00022 * 7 6 5 40 40 H 1.08995 * 109.47019 * 300.00236 * 7 6 5 41 41 H 1.00901 * 111.00121 * 56.04666 * 8 7 6 42 42 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 43 43 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 44 44 H 0.96996 * 120.00269 * 359.97438 * 12 10 9 45 45 H 0.97002 * 120.00283 * 180.02562 * 16 15 13 46 46 H 0.97006 * 120.00263 * 265.00029 * 21 2 1 47 47 H 1.09004 * 110.51551 * 237.28726 * 26 24 22 48 48 H 1.08994 * 110.51579 * 0.02562 * 26 24 22 49 49 H 1.09000 * 110.37615 * 142.81176 * 27 26 24 50 50 H 1.09002 * 110.37499 * 265.14644 * 27 26 24 51 51 H 1.08997 * 110.37387 * 281.67480 * 29 28 27 52 52 H 1.09003 * 110.37069 * 159.34172 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6135 1.3136 6 6 4.0748 -1.3343 2.5630 7 6 5.5997 -1.2269 2.6271 8 7 6.0894 -1.9195 3.8265 9 6 7.5530 -1.8365 3.9217 10 6 8.0173 -2.5560 5.1618 11 8 7.2086 -3.0861 5.8939 12 7 9.3312 -2.6102 5.4571 13 6 9.7537 -3.2652 6.5850 14 1 9.0337 -3.7373 7.2370 15 6 11.1083 -3.3217 6.8893 16 7 11.5132 -3.9490 7.9707 17 14 12.3538 -2.5058 5.7613 18 1 12.5689 -1.1018 6.1944 19 1 13.6394 -3.2462 5.8256 20 1 11.8431 -2.5209 4.3668 21 7 2.0183 -0.6906 -1.1962 22 6 2.1470 -0.0183 -2.3572 23 8 1.8582 1.1584 -2.4117 24 6 2.6487 -0.7288 -3.5878 25 1 2.0125 -1.5826 -3.8207 26 6 2.7098 0.2434 -4.7871 27 6 4.2047 0.2664 -5.1759 28 8 4.7332 -0.9845 -4.6841 29 6 4.1140 -1.1781 -3.3938 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -1.7716 1.2054 34 1 1.6054 -0.2618 2.1369 35 1 3.8532 0.4368 1.3573 36 1 3.9995 -1.0729 0.4259 37 1 3.7864 -2.3845 2.5197 38 1 3.6402 -0.8744 3.4506 39 1 5.8885 -0.1768 2.6702 40 1 6.0340 -1.6870 1.7396 41 1 5.7796 -2.8797 3.8414 42 1 8.0011 -2.3002 3.0428 43 1 7.8549 -0.7905 3.9744 44 1 9.9779 -2.1866 4.8714 45 1 12.4589 -3.9881 8.1833 46 1 2.2490 -1.6318 -1.1528 47 1 2.1060 -0.1312 -5.6137 48 1 2.3776 1.2380 -4.4899 49 1 4.3144 0.3251 -6.2588 50 1 4.7086 1.1058 -4.6967 51 1 4.6039 -0.5603 -2.6412 52 1 4.1538 -2.2292 -3.1077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169610639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:23 Heat of formation + Delta-G solvation = -164.342712 kcal Electronic energy + Delta-G solvation = -29002.971314 eV Core-core repulsion = 24807.456709 eV Total energy + Delta-G solvation = -4195.514604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48893 -40.31372 -39.63574 -38.05537 -36.97624 -35.95861 -34.39156 -33.74974 -33.41570 -31.97804 -30.07780 -29.67197 -27.71211 -25.72252 -24.79589 -23.86233 -23.23301 -22.05225 -21.66245 -21.26071 -21.01839 -20.23678 -18.66141 -17.79871 -17.56502 -17.29894 -17.15563 -16.72235 -16.49753 -16.18543 -15.93046 -15.75849 -15.60686 -15.25441 -15.00674 -14.88315 -14.81186 -14.44381 -14.22854 -13.95688 -13.84496 -13.60552 -13.40155 -13.19282 -13.14851 -12.97280 -12.80228 -12.49470 -12.41837 -12.36259 -12.30149 -12.08479 -11.98299 -11.88347 -11.76850 -11.53704 -11.52401 -11.40800 -10.87346 -10.85169 -10.44831 -10.25661 -10.10332 -9.30929 -8.41897 -6.03008 1.29979 1.35593 1.44383 1.55204 1.94361 2.13626 2.22620 2.73046 2.98575 3.14215 3.38194 3.40074 3.71890 3.79769 3.86066 4.01210 4.07676 4.10705 4.14347 4.23900 4.26042 4.29255 4.35252 4.43686 4.50230 4.56675 4.61734 4.69226 4.73194 4.76132 4.78930 4.81383 4.86283 4.95325 4.98462 5.00713 5.02209 5.09767 5.20647 5.30220 5.40066 5.49550 5.53410 5.58341 5.72588 5.90802 6.07941 6.42354 6.53107 6.59163 6.87110 7.21814 7.38798 7.95206 8.75656 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.001668 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.289239 B =16780.633032 C =18486.191152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.119 4.119 5 C -0.109 4.109 6 C -0.111 4.111 7 C 0.060 3.940 8 N -0.691 5.691 9 C 0.062 3.938 10 C 0.447 3.553 11 O -0.615 6.615 12 N -0.591 5.591 13 C -0.330 4.330 14 H 0.055 0.945 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.231 1.231 21 N -0.709 5.709 22 C 0.521 3.479 23 O -0.578 6.578 24 C -0.141 4.141 25 H 0.134 0.866 26 C -0.147 4.147 27 C 0.041 3.959 28 O -0.391 6.391 29 C 0.056 3.944 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.344 0.656 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.415 0.585 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.109 0.891 50 H 0.056 0.944 51 H 0.058 0.942 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.331 8.714 -30.064 36.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.069 4.069 8 N -0.324 5.324 9 C -0.071 4.071 10 C 0.235 3.765 11 O -0.499 6.499 12 N -0.232 5.232 13 C -0.460 4.460 14 H 0.073 0.927 15 C -0.214 4.214 16 N -0.574 5.574 17 Si 0.785 3.215 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.154 1.154 21 N -0.361 5.361 22 C 0.308 3.692 23 O -0.458 6.458 24 C -0.162 4.162 25 H 0.152 0.848 26 C -0.185 4.185 27 C -0.036 4.036 28 O -0.310 6.310 29 C -0.021 4.021 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.163 0.837 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.252 0.748 47 H 0.113 0.887 48 H 0.101 0.899 49 H 0.127 0.873 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.871 9.520 -29.144 36.536 hybrid contribution 1.121 -0.593 -0.272 1.297 sum -18.751 8.927 -29.416 36.008 Atomic orbital electron populations 1.22127 0.94844 1.02769 1.02019 1.20970 0.94168 0.96792 0.84267 0.91503 1.21849 0.95412 1.01896 0.96513 1.21471 0.95361 1.00484 0.97405 1.21494 0.93625 1.01252 0.98519 1.22081 0.96138 0.99101 0.89539 1.60071 1.08602 1.21929 1.41782 1.21627 0.90007 1.01659 0.93770 1.21024 0.81938 0.84139 0.89395 1.90537 1.54195 1.51141 1.54041 1.42040 1.07037 1.50823 1.23347 1.19015 0.93212 1.32207 1.01522 0.92676 1.26128 0.99110 0.97589 0.98563 1.69802 1.17316 1.43280 1.27005 0.85359 0.77658 0.78954 0.79510 1.18205 1.19943 1.15432 1.46044 1.66332 1.14685 1.08989 1.20641 0.76608 0.86732 0.85218 1.90683 1.51875 1.17917 1.85350 1.22759 0.99666 1.00693 0.93123 0.84809 1.22955 0.97607 1.00817 0.97102 1.23574 0.92410 0.86322 1.01277 1.89141 1.67794 1.40402 1.33690 1.23478 0.88809 1.03587 0.86205 0.91154 0.90823 0.94111 0.89720 0.89889 0.92505 0.91118 0.91540 0.92163 0.90953 0.94066 0.83712 0.90604 0.87121 0.77459 0.91115 0.74828 0.88685 0.89870 0.87301 0.92561 0.92366 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 71.98 0.68 -1.01 16 2 C 0.14 1.56 2.57 44.99 0.12 1.67 16 3 H 0.07 1.07 7.58 -2.39 -0.02 1.05 16 4 C -0.12 -1.02 4.75 30.60 0.15 -0.87 16 5 C -0.11 -1.19 5.10 30.59 0.16 -1.04 16 6 C -0.11 -1.72 5.47 30.59 0.17 -1.55 16 7 C 0.06 1.16 5.69 86.31 0.49 1.65 16 8 N -0.69 -19.87 6.12 -517.92 -3.17 -23.04 16 9 C 0.06 1.88 6.17 85.56 0.53 2.41 16 10 C 0.45 20.28 7.82 87.66 0.69 20.97 16 11 O -0.61 -34.28 15.78 -3.06 -0.05 -34.33 16 12 N -0.59 -27.97 5.09 -306.99 -1.56 -29.54 16 13 C -0.33 -19.46 10.16 84.04 0.85 -18.60 16 14 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 15 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 16 N -0.93 -56.35 13.96 21.66 0.30 -56.05 16 17 Si 0.97 38.73 27.74 68.60 1.90 40.63 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 21 N -0.71 -6.33 4.52 -442.55 -2.00 -8.33 16 22 C 0.52 7.20 6.98 87.66 0.61 7.81 16 23 O -0.58 -13.10 14.94 -3.05 -0.05 -13.15 16 24 C -0.14 -1.31 3.51 -10.53 -0.04 -1.35 16 25 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 26 C -0.15 -1.64 6.67 31.61 0.21 -1.43 16 27 C 0.04 0.48 7.63 72.49 0.55 1.03 16 28 O -0.39 -5.88 11.65 -148.98 -1.74 -7.62 16 29 C 0.06 0.54 7.17 72.48 0.52 1.06 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.64 7.75 -2.39 -0.02 0.63 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.34 10.44 8.43 -89.69 -0.76 9.69 16 42 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.39 15.22 5.76 -92.71 -0.53 14.68 16 45 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 46 H 0.41 1.42 8.60 -92.70 -0.80 0.62 16 47 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 48 H 0.08 1.28 6.50 -2.39 -0.02 1.27 16 49 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.06 0.64 7.86 -2.39 -0.02 0.62 16 52 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -82.99 421.81 -1.43 -84.41 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -1.22 Total: 36.65 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.15 Total: 10.36 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -6.43 Total: -116.95 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -1.83 Total: -55.10 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.90 Total: 40.63 kcal Total: -82.99 -1.43 -84.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169610639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.930 kcal (2) G-P(sol) polarization free energy of solvation -82.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds