Wall clock time and date at job start Wed Apr 1 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 120.00195 * 2 1 4 4 N 1.34779 * 119.99981 * 180.02562 * 2 1 3 5 5 C 1.47156 * 120.98117 * 359.97438 * 4 2 1 6 6 C 1.53295 * 108.38276 * 230.55747 * 5 4 2 7 7 O 1.42965 * 109.22757 * 307.69929 * 6 5 4 8 8 C 1.42962 * 114.16560 * 62.58038 * 7 6 5 9 9 H 1.09001 * 109.55713 * 57.36536 * 8 7 6 10 10 C 1.50693 * 109.51354 * 177.50083 * 8 7 6 11 11 O 1.21278 * 120.00066 * 4.73994 * 10 8 7 12 12 N 1.34775 * 120.00334 * 184.75002 * 10 8 7 13 13 C 1.46493 * 120.00428 * 179.97438 * 12 10 8 14 14 H 1.09003 * 109.47153 * 324.99344 * 13 12 10 15 15 C 1.52995 * 109.47395 * 84.99626 * 13 12 10 16 16 C 1.53006 * 109.47558 * 204.99589 * 13 12 10 17 17 C 1.53008 * 109.46807 * 64.99368 * 16 13 12 18 18 C 1.52996 * 109.46808 * 180.02562 * 17 16 13 19 19 C 1.52998 * 109.46929 * 180.02562 * 18 17 16 20 20 N 1.46506 * 109.47237 * 179.97438 * 19 18 17 21 21 C 1.36939 * 120.00073 * 179.72302 * 20 19 18 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00056 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46896 * 90.00225 * 25 23 21 27 27 H 1.48501 * 109.47275 * 210.00265 * 25 23 21 28 28 H 1.48499 * 109.47039 * 330.00065 * 25 23 21 29 29 C 1.47149 * 120.98238 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47443 * 239.99746 * 1 2 3 31 31 H 1.08998 * 109.47086 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47028 * 120.00170 * 1 2 3 33 33 H 1.08993 * 109.68392 * 350.27956 * 5 4 2 34 34 H 1.08997 * 109.68063 * 110.80184 * 5 4 2 35 35 H 1.09005 * 109.51473 * 67.62548 * 6 5 4 36 36 H 1.08994 * 109.51368 * 187.77426 * 6 5 4 37 37 H 0.97008 * 120.00110 * 359.97438 * 12 10 8 38 38 H 1.08995 * 109.47385 * 60.00040 * 15 13 12 39 39 H 1.08999 * 109.47184 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.47039 * 300.00181 * 15 13 12 41 41 H 1.08996 * 109.46626 * 305.00062 * 16 13 12 42 42 H 1.08994 * 109.47559 * 184.99785 * 16 13 12 43 43 H 1.09000 * 109.46719 * 60.00443 * 17 16 13 44 44 H 1.08994 * 109.47402 * 300.00513 * 17 16 13 45 45 H 1.09000 * 109.47441 * 60.00491 * 18 17 16 46 46 H 1.09002 * 109.47087 * 299.99937 * 18 17 16 47 47 H 1.09001 * 109.47671 * 60.00109 * 19 18 17 48 48 H 1.08998 * 109.47454 * 300.00107 * 19 18 17 49 49 H 0.97005 * 119.99811 * 0.02562 * 20 19 18 50 50 H 0.97000 * 119.99835 * 179.97438 * 24 23 21 51 51 H 1.08998 * 109.68514 * 9.72046 * 29 4 2 52 52 H 1.08998 * 109.71365 * 249.18215 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4670 -2.4540 -0.0005 6 6 2.0411 -3.3254 1.1225 7 8 3.4632 -3.3882 0.9894 8 6 4.1198 -2.1253 1.1225 9 1 3.8717 -1.6851 2.0883 10 6 5.6109 -2.3207 1.0264 11 8 6.0639 -3.4172 0.7747 12 7 6.4412 -1.2769 1.2203 13 6 7.8908 -1.4669 1.1274 14 1 8.1532 -2.4534 1.5098 15 6 8.3274 -1.3539 -0.3345 16 6 8.6001 -0.3937 1.9558 17 6 8.2607 -0.5846 3.4355 18 6 8.9695 0.4890 4.2638 19 6 8.6306 0.2978 5.7435 20 7 9.3098 1.3254 6.5368 21 6 9.1497 1.3578 7.8964 22 1 8.5231 0.6256 8.3839 23 6 9.7927 2.3317 8.6478 24 7 9.6385 2.3632 9.9546 25 14 10.8770 3.5977 7.8046 26 1 10.0590 4.7793 7.4303 27 1 11.9592 4.0180 8.7305 28 1 11.4747 3.0022 6.5825 29 6 3.6521 -1.1925 0.0000 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 0.4045 -2.2844 0.1732 34 1 1.6073 -2.9516 -0.9601 35 1 1.7847 -2.8900 2.0884 36 1 1.6242 -4.3300 1.0530 37 1 6.0790 -0.3998 1.4214 38 1 8.0651 -0.3675 -0.7169 39 1 9.4059 -1.4958 -0.4037 40 1 7.8222 -2.1185 -0.9247 41 1 8.2694 0.5930 1.6316 42 1 9.6776 -0.4799 1.8161 43 1 8.5914 -1.5713 3.7597 44 1 7.1832 -0.4984 3.5752 45 1 8.6385 1.4756 3.9395 46 1 10.0471 0.4031 4.1242 47 1 8.9619 -0.6888 6.0677 48 1 7.5531 0.3833 5.8835 49 1 9.8693 1.9855 6.0984 50 1 10.0882 3.0436 10.4798 51 1 4.0365 -0.1875 0.1741 52 1 4.0139 -1.5627 -0.9592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176400692.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:28 Heat of formation + Delta-G solvation = -111.655710 kcal Electronic energy + Delta-G solvation = -30025.570315 eV Core-core repulsion = 25832.340391 eV Total energy + Delta-G solvation = -4193.229925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15442 -39.96784 -38.61590 -37.00511 -35.50020 -35.26434 -33.51661 -32.76432 -31.42355 -30.61174 -30.36884 -28.16395 -27.77610 -25.27339 -24.27209 -23.37040 -21.95660 -21.08740 -20.89697 -20.71150 -19.89983 -18.06286 -17.51594 -17.50624 -17.22992 -16.72731 -16.18500 -16.14343 -15.69806 -15.13382 -14.97554 -14.84462 -14.56984 -14.21096 -14.11662 -14.03786 -13.61918 -13.56204 -13.29992 -13.14820 -13.04789 -12.74266 -12.72293 -12.55783 -12.43498 -12.19501 -11.92423 -11.67617 -11.50993 -11.43633 -11.18019 -10.87380 -10.84958 -10.81766 -10.43245 -10.40386 -10.33974 -10.09207 -10.02166 -9.57165 -9.35305 -9.20720 -8.86982 -7.20270 -5.74745 -3.09928 2.01516 2.12583 2.37834 2.41182 3.38831 3.41568 3.46316 3.47633 3.93360 4.03259 4.20982 4.28619 4.38453 4.46846 4.54738 4.59977 4.61109 4.64877 4.79213 4.81928 4.87782 4.90986 4.99684 5.08792 5.18132 5.22026 5.30061 5.31041 5.33471 5.48998 5.54620 5.57346 5.65629 5.67709 5.79538 5.86400 6.01789 6.07555 6.11517 6.18633 6.26540 6.36515 6.43467 6.70526 6.78879 6.82762 7.16628 7.55657 7.89153 8.02253 8.44657 9.24108 9.96626 10.16945 11.43839 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.002070 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.048124 B =13522.764934 C =14570.745886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.515 3.485 3 O -0.538 6.538 4 N -0.619 5.619 5 C 0.070 3.930 6 C 0.045 3.955 7 O -0.348 6.348 8 C 0.060 3.940 9 H 0.092 0.908 10 C 0.525 3.475 11 O -0.514 6.514 12 N -0.718 5.718 13 C 0.142 3.858 14 H 0.091 0.909 15 C -0.164 4.164 16 C -0.128 4.128 17 C -0.115 4.115 18 C -0.130 4.130 19 C 0.156 3.844 20 N -0.758 5.758 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.001 3.999 24 N -0.936 5.936 25 Si 0.886 3.114 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.090 3.910 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.402 0.598 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.108 0.892 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.013 -10.677 -27.655 35.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.304 3.696 3 O -0.414 6.414 4 N -0.355 5.355 5 C -0.053 4.053 6 C -0.033 4.033 7 O -0.265 6.265 8 C -0.002 4.002 9 H 0.109 0.891 10 C 0.309 3.691 11 O -0.388 6.388 12 N -0.372 5.372 13 C 0.039 3.961 14 H 0.109 0.891 15 C -0.222 4.222 16 C -0.165 4.165 17 C -0.153 4.153 18 C -0.168 4.168 19 C 0.029 3.971 20 N -0.404 5.404 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.194 4.194 24 N -0.584 5.584 25 Si 0.717 3.283 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.034 4.034 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.237 0.763 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.042 0.958 49 H 0.193 0.807 50 H 0.069 0.931 51 H 0.126 0.874 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.339 -11.152 -27.642 34.997 hybrid contribution 0.366 1.534 -0.253 1.597 sum -17.973 -9.618 -27.895 34.550 Atomic orbital electron populations 1.21952 0.91151 1.05927 1.04266 1.20923 0.90846 0.82642 0.75181 1.90754 1.70683 1.30776 1.49221 1.48183 1.06343 1.06399 1.74573 1.22553 0.97684 0.84115 1.00941 1.23101 0.81195 1.01597 0.97389 1.88126 1.18420 1.26806 1.93176 1.22300 0.91588 0.86496 0.99845 0.89061 1.19815 0.87152 0.84863 0.77304 1.90742 1.77382 1.24547 1.46128 1.46043 1.06988 1.11770 1.72412 1.21080 0.78407 1.00900 0.95742 0.89090 1.22183 1.01848 1.02158 0.96027 1.21953 1.01094 0.98221 0.95282 1.21518 1.00706 0.99701 0.93365 1.21779 1.00395 0.98499 0.96094 1.20629 0.95599 0.92379 0.88480 1.42744 1.58106 1.34672 1.04858 1.19086 1.24718 1.12181 0.81342 0.89290 1.24695 1.00373 0.99049 0.95301 1.69711 1.47671 1.36853 1.04140 0.86510 0.80834 0.82280 0.78700 1.21091 1.21712 1.20345 1.22126 0.80600 1.01578 0.99062 0.89121 0.88606 0.89200 0.88145 0.89929 0.92050 0.86696 0.76324 0.92362 0.91367 0.92205 0.91230 0.90056 0.91715 0.91995 0.92136 0.92068 0.95729 0.95783 0.80731 0.93091 0.87377 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 8.69 36.00 0.31 -0.31 16 2 C 0.51 4.03 7.82 -10.99 -0.09 3.95 16 3 O -0.54 -6.62 16.55 5.56 0.09 -6.53 16 4 N -0.62 -4.08 3.02 -172.30 -0.52 -4.60 16 5 C 0.07 0.26 6.54 -3.53 -0.02 0.23 16 6 C 0.04 0.22 6.98 37.31 0.26 0.48 16 7 O -0.35 -3.29 9.92 -55.07 -0.55 -3.84 16 8 C 0.06 0.52 3.19 -27.75 -0.09 0.43 16 9 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 10 C 0.53 5.61 7.14 -10.99 -0.08 5.53 16 11 O -0.51 -7.58 16.17 -14.28 -0.23 -7.82 16 12 N -0.72 -6.20 4.49 -53.81 -0.24 -6.44 16 13 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16 14 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16 15 C -0.16 -1.34 9.48 37.16 0.35 -0.99 16 16 C -0.13 -1.14 4.75 -26.72 -0.13 -1.27 16 17 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16 18 C -0.13 -1.91 5.33 -26.73 -0.14 -2.06 16 19 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 20 N -0.76 -18.69 5.41 -59.91 -0.32 -19.01 16 21 C -0.24 -7.12 10.47 -15.06 -0.16 -7.28 16 22 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 23 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 24 N -0.94 -29.98 13.97 55.49 0.78 -29.21 16 25 Si 0.89 22.54 27.73 -169.99 -4.71 17.82 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 29 C 0.09 0.68 5.88 -3.55 -0.02 0.66 16 30 H 0.09 0.16 7.66 -51.93 -0.40 -0.24 16 31 H 0.10 0.40 8.12 -51.93 -0.42 -0.03 16 32 H 0.09 0.15 8.01 -51.93 -0.42 -0.27 16 33 H 0.10 0.08 6.05 -51.93 -0.31 -0.23 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 2.75 8.60 -40.82 -0.35 2.40 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.36 8.59 5.53 -40.82 -0.23 8.36 16 50 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 51 H 0.11 0.86 7.08 -51.93 -0.37 0.49 16 52 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 418.62 15.07 6.31 6.31 Total: -1.00 -38.97 418.62 -8.86 -47.82 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -9.22 Total: 3.44 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.23 Total: 2.05 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.31 Total: -59.26 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.69 Total: -18.18 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.82 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -38.97 -8.86 -47.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176400692.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.832 kcal (2) G-P(sol) polarization free energy of solvation -38.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds