Wall clock time and date at job start Wed Apr 1 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21277 * 120.00195 * 2 1 4 4 N 1.34779 * 119.99981 * 180.02562 * 2 1 3 5 5 C 1.47156 * 120.98117 * 359.97438 * 4 2 1 6 6 C 1.53295 * 108.38276 * 230.55747 * 5 4 2 7 7 O 1.42965 * 109.22757 * 307.69929 * 6 5 4 8 8 C 1.42962 * 114.16560 * 62.58038 * 7 6 5 9 9 H 1.09001 * 109.55713 * 57.36536 * 8 7 6 10 10 C 1.50693 * 109.51354 * 177.50083 * 8 7 6 11 11 O 1.21278 * 120.00066 * 4.73994 * 10 8 7 12 12 N 1.34775 * 120.00334 * 184.75002 * 10 8 7 13 13 C 1.46493 * 120.00428 * 179.97438 * 12 10 8 14 14 H 1.09003 * 109.47153 * 324.99344 * 13 12 10 15 15 C 1.52995 * 109.47395 * 84.99626 * 13 12 10 16 16 C 1.53006 * 109.47558 * 204.99589 * 13 12 10 17 17 C 1.53008 * 109.46807 * 64.99368 * 16 13 12 18 18 C 1.52996 * 109.46808 * 180.02562 * 17 16 13 19 19 C 1.52998 * 109.46929 * 180.02562 * 18 17 16 20 20 N 1.46506 * 109.47237 * 179.97438 * 19 18 17 21 21 C 1.36939 * 120.00073 * 179.72302 * 20 19 18 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 19 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00056 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46896 * 90.00225 * 25 23 21 27 27 H 1.48501 * 109.47275 * 210.00265 * 25 23 21 28 28 H 1.48499 * 109.47039 * 330.00065 * 25 23 21 29 29 C 1.47149 * 120.98238 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47443 * 239.99746 * 1 2 3 31 31 H 1.08998 * 109.47086 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47028 * 120.00170 * 1 2 3 33 33 H 1.08993 * 109.68392 * 350.27956 * 5 4 2 34 34 H 1.08997 * 109.68063 * 110.80184 * 5 4 2 35 35 H 1.09005 * 109.51473 * 67.62548 * 6 5 4 36 36 H 1.08994 * 109.51368 * 187.77426 * 6 5 4 37 37 H 0.97008 * 120.00110 * 359.97438 * 12 10 8 38 38 H 1.08995 * 109.47385 * 60.00040 * 15 13 12 39 39 H 1.08999 * 109.47184 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.47039 * 300.00181 * 15 13 12 41 41 H 1.08996 * 109.46626 * 305.00062 * 16 13 12 42 42 H 1.08994 * 109.47559 * 184.99785 * 16 13 12 43 43 H 1.09000 * 109.46719 * 60.00443 * 17 16 13 44 44 H 1.08994 * 109.47402 * 300.00513 * 17 16 13 45 45 H 1.09000 * 109.47441 * 60.00491 * 18 17 16 46 46 H 1.09002 * 109.47087 * 299.99937 * 18 17 16 47 47 H 1.09001 * 109.47671 * 60.00109 * 19 18 17 48 48 H 1.08998 * 109.47454 * 300.00107 * 19 18 17 49 49 H 0.97005 * 119.99811 * 0.02562 * 20 19 18 50 50 H 0.97000 * 119.99835 * 179.97438 * 24 23 21 51 51 H 1.08998 * 109.68514 * 9.72046 * 29 4 2 52 52 H 1.08998 * 109.71365 * 249.18215 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4670 -2.4540 -0.0005 6 6 2.0411 -3.3254 1.1225 7 8 3.4632 -3.3882 0.9894 8 6 4.1198 -2.1253 1.1225 9 1 3.8717 -1.6851 2.0883 10 6 5.6109 -2.3207 1.0264 11 8 6.0639 -3.4172 0.7747 12 7 6.4412 -1.2769 1.2203 13 6 7.8908 -1.4669 1.1274 14 1 8.1532 -2.4534 1.5098 15 6 8.3274 -1.3539 -0.3345 16 6 8.6001 -0.3937 1.9558 17 6 8.2607 -0.5846 3.4355 18 6 8.9695 0.4890 4.2638 19 6 8.6306 0.2978 5.7435 20 7 9.3098 1.3254 6.5368 21 6 9.1497 1.3578 7.8964 22 1 8.5231 0.6256 8.3839 23 6 9.7927 2.3317 8.6478 24 7 9.6385 2.3632 9.9546 25 14 10.8770 3.5977 7.8046 26 1 10.0590 4.7793 7.4303 27 1 11.9592 4.0180 8.7305 28 1 11.4747 3.0022 6.5825 29 6 3.6521 -1.1925 0.0000 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 0.4045 -2.2844 0.1732 34 1 1.6073 -2.9516 -0.9601 35 1 1.7847 -2.8900 2.0884 36 1 1.6242 -4.3300 1.0530 37 1 6.0790 -0.3998 1.4214 38 1 8.0651 -0.3675 -0.7169 39 1 9.4059 -1.4958 -0.4037 40 1 7.8222 -2.1185 -0.9247 41 1 8.2694 0.5930 1.6316 42 1 9.6776 -0.4799 1.8161 43 1 8.5914 -1.5713 3.7597 44 1 7.1832 -0.4984 3.5752 45 1 8.6385 1.4756 3.9395 46 1 10.0471 0.4031 4.1242 47 1 8.9619 -0.6888 6.0677 48 1 7.5531 0.3833 5.8835 49 1 9.8693 1.9855 6.0984 50 1 10.0882 3.0436 10.4798 51 1 4.0365 -0.1875 0.1741 52 1 4.0139 -1.5627 -0.9592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176400692.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:27 Heat of formation + Delta-G solvation = -140.320691 kcal Electronic energy + Delta-G solvation = -30026.813322 eV Core-core repulsion = 25832.340391 eV Total energy + Delta-G solvation = -4194.472931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.78800 -40.70317 -39.26457 -38.04468 -36.95624 -35.92605 -34.85180 -33.74879 -32.91665 -31.63243 -30.80858 -29.08598 -28.68189 -25.95154 -25.66227 -24.03080 -23.40214 -22.24297 -21.93382 -21.52711 -20.40015 -19.63906 -18.69186 -18.18421 -17.84266 -17.34376 -16.91720 -16.69225 -16.64295 -16.28768 -16.20609 -15.88259 -15.66155 -15.42000 -14.90050 -14.79904 -14.66521 -14.58749 -14.28388 -14.19842 -13.96897 -13.64849 -13.54028 -13.12753 -13.07482 -12.98054 -12.94878 -12.93555 -12.69568 -12.47116 -12.33084 -12.07254 -11.95284 -11.90181 -11.80549 -11.52484 -11.46170 -11.41839 -11.08000 -10.98924 -10.80795 -10.16929 -9.76530 -9.32939 -8.05569 -5.39931 1.34115 1.36491 1.41133 1.48718 1.52610 1.72741 1.81670 2.46917 2.90563 3.25351 3.40196 3.46033 3.58656 3.59724 3.78414 3.89834 3.93107 4.00670 4.06424 4.15577 4.25171 4.29380 4.32503 4.37233 4.45609 4.51430 4.55877 4.62209 4.63300 4.71472 4.73972 4.85211 4.85871 4.89886 4.96113 4.99887 5.07142 5.08772 5.20044 5.23584 5.30804 5.39242 5.48366 5.52949 5.72096 5.89821 6.18842 6.23247 6.43537 7.01199 7.05289 7.10962 7.81400 8.01837 9.16074 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.002070 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.048124 B =13522.764934 C =14570.745886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.507 3.493 3 O -0.593 6.593 4 N -0.618 5.618 5 C 0.070 3.930 6 C 0.037 3.963 7 O -0.379 6.379 8 C 0.068 3.932 9 H 0.099 0.901 10 C 0.523 3.477 11 O -0.561 6.561 12 N -0.708 5.708 13 C 0.143 3.857 14 H 0.070 0.930 15 C -0.158 4.158 16 C -0.116 4.116 17 C -0.109 4.109 18 C -0.116 4.116 19 C 0.149 3.851 20 N -0.761 5.761 21 C -0.242 4.242 22 H 0.052 0.948 23 C -0.068 4.068 24 N -0.985 5.985 25 Si 0.962 3.038 26 H -0.275 1.275 27 H -0.294 1.294 28 H -0.249 1.249 29 C 0.094 3.906 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.136 0.864 37 H 0.413 0.587 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.016 0.984 48 H 0.020 0.980 49 H 0.367 0.633 50 H 0.259 0.741 51 H 0.102 0.898 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.749 -9.984 -30.086 37.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.299 3.701 3 O -0.473 6.473 4 N -0.352 5.352 5 C -0.051 4.051 6 C -0.040 4.040 7 O -0.297 6.297 8 C 0.006 3.994 9 H 0.116 0.884 10 C 0.308 3.692 11 O -0.438 6.438 12 N -0.361 5.361 13 C 0.040 3.960 14 H 0.088 0.912 15 C -0.216 4.216 16 C -0.154 4.154 17 C -0.147 4.147 18 C -0.154 4.154 19 C 0.024 3.976 20 N -0.407 5.407 21 C -0.373 4.373 22 H 0.070 0.930 23 C -0.260 4.260 24 N -0.635 5.635 25 Si 0.789 3.211 26 H -0.201 1.201 27 H -0.220 1.220 28 H -0.174 1.174 29 C -0.030 4.030 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.249 0.751 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.034 0.966 48 H 0.038 0.962 49 H 0.201 0.799 50 H 0.068 0.932 51 H 0.120 0.880 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.109 -10.486 -30.116 37.177 hybrid contribution 0.499 1.184 0.561 1.402 sum -18.611 -9.301 -29.555 36.144 Atomic orbital electron populations 1.21996 0.87618 1.06357 1.06637 1.21746 0.92528 0.81956 0.73884 1.90725 1.72015 1.32684 1.51907 1.48316 1.05887 1.07389 1.73620 1.22780 0.99208 0.82391 1.00752 1.23409 0.79073 1.03283 0.98206 1.88090 1.20929 1.27257 1.93409 1.22200 0.90129 0.86662 1.00420 0.88385 1.20242 0.88243 0.84397 0.76343 1.90713 1.78291 1.26328 1.48509 1.46014 1.06902 1.11903 1.71298 1.21039 0.78532 0.99992 0.96482 0.91187 1.22121 1.02379 1.02265 0.94814 1.21860 1.01744 0.98783 0.93023 1.21447 1.00432 0.98157 0.94661 1.21665 1.01100 1.00073 0.92586 1.20851 0.94835 0.90653 0.91308 1.42762 1.58611 1.35924 1.03392 1.19063 1.23569 1.11039 0.83590 0.93032 1.25628 1.02519 1.01810 0.96003 1.69904 1.49320 1.38128 1.06159 0.85303 0.78443 0.79095 0.78309 1.20123 1.22040 1.17372 1.21975 0.81831 1.00816 0.98406 0.86634 0.89303 0.86599 0.84536 0.89373 0.91528 0.84645 0.75070 0.91087 0.90220 0.93903 0.89597 0.88974 0.92518 0.91832 0.91102 0.91514 0.96585 0.96220 0.79924 0.93223 0.87966 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 8.69 71.24 0.62 -0.13 16 2 C 0.51 7.31 7.82 87.66 0.69 8.00 16 3 O -0.59 -14.62 16.55 -3.02 -0.05 -14.67 16 4 N -0.62 -7.28 3.02 -817.44 -2.47 -9.74 16 5 C 0.07 0.34 6.54 86.35 0.56 0.90 16 6 C 0.04 0.30 6.98 72.08 0.50 0.80 16 7 O -0.38 -7.02 9.92 -130.01 -1.29 -8.31 16 8 C 0.07 1.16 3.19 29.93 0.10 1.26 16 9 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 10 C 0.52 11.34 7.14 87.65 0.63 11.97 16 11 O -0.56 -17.15 16.17 15.95 0.26 -16.89 16 12 N -0.71 -11.84 4.49 -442.55 -1.99 -13.83 16 13 C 0.14 2.46 2.57 44.99 0.12 2.58 16 14 H 0.07 1.54 7.58 -2.39 -0.02 1.52 16 15 C -0.16 -2.38 9.48 71.98 0.68 -1.69 16 16 C -0.12 -1.79 4.75 30.60 0.15 -1.65 16 17 C -0.11 -2.31 5.10 30.60 0.16 -2.15 16 18 C -0.12 -3.17 5.33 30.59 0.16 -3.00 16 19 C 0.15 5.80 6.26 86.38 0.54 6.34 16 20 N -0.76 -36.80 5.41 -343.44 -1.86 -38.66 16 21 C -0.24 -14.36 10.47 84.03 0.88 -13.48 16 22 H 0.05 3.37 8.06 -2.91 -0.02 3.34 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 24 N -0.98 -64.51 13.97 21.65 0.30 -64.21 16 25 Si 0.96 46.02 27.73 68.60 1.90 47.93 16 26 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 28 H -0.25 -10.67 6.52 99.48 0.65 -10.02 16 29 C 0.09 1.41 5.88 86.34 0.51 1.91 16 30 H 0.12 -0.04 7.66 -2.39 -0.02 -0.06 16 31 H 0.09 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.12 -0.06 8.01 -2.39 -0.02 -0.08 16 33 H 0.14 -0.34 6.05 -2.39 -0.01 -0.35 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.37 16 35 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.41 5.19 8.60 -92.70 -0.80 4.39 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.33 7.75 -2.39 -0.02 1.31 16 45 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.37 16.59 5.53 -92.70 -0.51 16.08 16 50 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 51 H 0.10 1.64 7.08 -2.39 -0.02 1.63 16 52 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16 Total: -1.00 -88.14 418.62 1.10 -87.03 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -0.46 Total: 23.35 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.75 Total: 8.00 kcal Atomic # 7 Polarization: -120.43 SS G_CDS: -6.01 Total: -126.44 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.08 Total: -39.87 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.93 kcal Total: -88.14 1.10 -87.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176400692.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.286 kcal (2) G-P(sol) polarization free energy of solvation -88.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds