Wall clock time and date at job start Wed Apr 1 2020 01:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21289 * 119.99911 * 2 1 4 4 N 1.34779 * 120.00228 * 180.02562 * 2 1 3 5 5 C 1.47144 * 120.98379 * 174.65122 * 4 2 1 6 6 C 1.53291 * 108.38747 * 129.44208 * 5 4 2 7 7 O 1.42966 * 109.21931 * 52.30251 * 6 5 4 8 8 C 1.42959 * 114.16738 * 297.41692 * 7 6 5 9 9 H 1.08995 * 109.55816 * 302.63385 * 8 7 6 10 10 C 1.50693 * 109.51490 * 182.50709 * 8 7 6 11 11 O 1.21283 * 120.00025 * 355.25347 * 10 8 7 12 12 N 1.34774 * 120.00336 * 175.25569 * 10 8 7 13 13 C 1.46500 * 120.00467 * 179.97438 * 12 10 8 14 14 H 1.09006 * 109.46860 * 325.00389 * 13 12 10 15 15 C 1.52997 * 109.47068 * 84.99840 * 13 12 10 16 16 C 1.52997 * 109.47484 * 205.00465 * 13 12 10 17 17 C 1.52998 * 109.47621 * 64.99784 * 16 13 12 18 18 C 1.53000 * 109.47413 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.46909 * 180.02562 * 18 17 16 20 20 N 1.46501 * 109.46789 * 179.97438 * 19 18 17 21 21 C 1.36930 * 120.00233 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99741 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00646 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99421 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00435 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47490 * 89.99673 * 25 23 21 27 27 H 1.48498 * 109.47085 * 209.99980 * 25 23 21 28 28 H 1.48500 * 109.46934 * 329.99422 * 25 23 21 29 29 C 1.47150 * 120.97995 * 354.63104 * 4 2 1 30 30 H 1.09006 * 109.47205 * 274.73711 * 1 2 3 31 31 H 1.09005 * 109.47465 * 34.73193 * 1 2 3 32 32 H 1.09001 * 109.47261 * 154.73596 * 1 2 3 33 33 H 1.09002 * 109.68212 * 249.17039 * 5 4 2 34 34 H 1.09005 * 109.68257 * 9.71666 * 5 4 2 35 35 H 1.08999 * 109.51663 * 172.22484 * 6 5 4 36 36 H 1.08997 * 109.51688 * 292.37861 * 6 5 4 37 37 H 0.97002 * 119.99950 * 0.02562 * 12 10 8 38 38 H 1.09006 * 109.46832 * 60.00532 * 15 13 12 39 39 H 1.08997 * 109.47242 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47164 * 300.00287 * 15 13 12 41 41 H 1.09004 * 109.47376 * 185.00478 * 16 13 12 42 42 H 1.09003 * 109.46963 * 304.99673 * 16 13 12 43 43 H 1.09001 * 109.46627 * 300.00471 * 17 16 13 44 44 H 1.09003 * 109.47043 * 59.99938 * 17 16 13 45 45 H 1.08999 * 109.46693 * 300.00030 * 18 17 16 46 46 H 1.08994 * 109.46852 * 60.00111 * 18 17 16 47 47 H 1.08993 * 109.46980 * 299.99696 * 19 18 17 48 48 H 1.08994 * 109.47353 * 60.00320 * 19 18 17 49 49 H 0.97006 * 120.00334 * 0.02562 * 20 19 18 50 50 H 0.97005 * 119.99228 * 180.02562 * 24 23 21 51 51 H 1.08998 * 109.68801 * 110.83128 * 29 4 2 52 52 H 1.09004 * 109.68334 * 350.27333 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6473 -1.1951 -0.1181 6 6 4.2059 -2.0754 1.0057 7 8 3.5431 -3.3419 0.9849 8 6 2.1364 -3.2704 1.2294 9 1 1.9571 -2.7906 2.1915 10 6 1.5568 -4.6614 1.2450 11 8 2.2590 -5.6139 0.9797 12 7 0.2581 -4.8469 1.5537 13 6 -0.3056 -6.1991 1.5683 14 1 0.1615 -6.7958 0.7848 15 6 -0.0412 -6.8471 2.9288 16 6 -1.8139 -6.1256 1.3227 17 6 -2.0758 -5.5932 -0.0875 18 6 -3.5842 -5.5192 -0.3328 19 6 -3.8460 -4.9874 -1.7434 20 7 -5.2903 -4.9172 -1.9785 21 6 -5.7672 -4.4668 -3.1804 22 1 -5.0786 -4.1629 -3.9550 23 6 -7.1357 -4.3996 -3.4030 24 7 -7.9749 -4.7695 -2.4589 25 14 -7.7863 -3.7859 -5.0430 26 1 -7.9421 -4.9321 -5.9741 27 1 -9.1035 -3.1311 -4.8392 28 1 -6.8306 -2.8063 -5.6193 29 6 1.4719 -2.4513 0.1169 30 1 -0.3634 0.0849 1.0242 31 1 -0.3634 0.8446 -0.5855 32 1 -0.3634 -0.9294 -0.4386 33 1 3.9302 -1.6108 -1.0852 34 1 4.0426 -0.1837 -0.0231 35 1 5.2756 -2.2218 0.8560 36 1 4.0350 -1.5908 1.9669 37 1 -0.3037 -4.0850 1.7655 38 1 -0.5083 -6.2503 3.7124 39 1 -0.4601 -7.8533 2.9396 40 1 1.0334 -6.8994 3.1037 41 1 -2.2471 -7.1210 1.4216 42 1 -2.2689 -5.4572 2.0537 43 1 -1.6427 -4.5979 -0.1863 44 1 -1.6208 -6.2616 -0.8185 45 1 -4.0176 -6.5145 -0.2339 46 1 -4.0387 -4.8506 0.3981 47 1 -3.4125 -3.9923 -1.8427 48 1 -3.3915 -5.6564 -2.4741 49 1 -5.9088 -5.1890 -1.2824 50 1 -8.9312 -4.7229 -2.6146 51 1 1.5357 -2.9936 -0.8264 52 1 0.4264 -2.2718 0.3678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176400694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:32 Heat of formation + Delta-G solvation = -140.807099 kcal Electronic energy + Delta-G solvation = -30390.154753 eV Core-core repulsion = 26195.660730 eV Total energy + Delta-G solvation = -4194.494024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77892 -40.69314 -39.24347 -37.92527 -36.78831 -35.98342 -34.76559 -33.58229 -32.64796 -31.68384 -30.68895 -28.77738 -28.53046 -26.14339 -25.78331 -23.99823 -23.45037 -22.04614 -21.84850 -21.50010 -20.42018 -19.09804 -18.71765 -18.14589 -17.82712 -17.21274 -16.99301 -16.71232 -16.66101 -16.26115 -16.11870 -15.68284 -15.44368 -15.30444 -15.18372 -14.84528 -14.67374 -14.49572 -14.20594 -14.02134 -13.94618 -13.59219 -13.23303 -13.06107 -12.99713 -12.93731 -12.86744 -12.80475 -12.69155 -12.41101 -12.23124 -12.13070 -12.00934 -11.84800 -11.75237 -11.43518 -11.39234 -11.34590 -11.03344 -10.90984 -10.79751 -10.10906 -9.77314 -8.97963 -7.94778 -5.23078 1.38148 1.48300 1.49677 1.51066 1.58094 1.75697 1.80758 2.56936 2.90749 3.39181 3.44687 3.45244 3.63160 3.72486 3.82853 3.97090 4.04507 4.10197 4.11432 4.13650 4.19872 4.35046 4.41084 4.44367 4.47441 4.54247 4.62958 4.64930 4.66366 4.71149 4.79812 4.83245 4.94105 4.98742 5.04492 5.06219 5.09482 5.16995 5.22398 5.33414 5.37668 5.48356 5.49537 5.59664 5.61462 5.89240 6.17639 6.28813 6.53792 6.98343 7.20717 7.34629 8.12874 8.34706 9.28927 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009305 B = 0.002474 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.268940 B =11313.228599 C =13714.509221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.514 3.486 3 O -0.590 6.590 4 N -0.616 5.616 5 C 0.070 3.930 6 C 0.052 3.948 7 O -0.378 6.378 8 C 0.063 3.937 9 H 0.114 0.886 10 C 0.524 3.476 11 O -0.564 6.564 12 N -0.703 5.703 13 C 0.146 3.854 14 H 0.068 0.932 15 C -0.159 4.159 16 C -0.117 4.117 17 C -0.106 4.106 18 C -0.113 4.113 19 C 0.148 3.852 20 N -0.750 5.750 21 C -0.246 4.246 22 H 0.074 0.926 23 C -0.076 4.076 24 N -0.970 5.970 25 Si 0.972 3.028 26 H -0.288 1.288 27 H -0.294 1.294 28 H -0.269 1.269 29 C 0.084 3.916 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.067 0.933 37 H 0.417 0.583 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.024 0.976 48 H 0.010 0.990 49 H 0.374 0.626 50 H 0.251 0.749 51 H 0.080 0.920 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.342 4.020 14.185 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.305 3.695 3 O -0.471 6.471 4 N -0.350 5.350 5 C -0.053 4.053 6 C -0.025 4.025 7 O -0.296 6.296 8 C 0.001 3.999 9 H 0.131 0.869 10 C 0.309 3.691 11 O -0.441 6.441 12 N -0.357 5.357 13 C 0.042 3.958 14 H 0.087 0.913 15 C -0.218 4.218 16 C -0.154 4.154 17 C -0.144 4.144 18 C -0.151 4.151 19 C 0.021 3.979 20 N -0.392 5.392 21 C -0.378 4.378 22 H 0.092 0.908 23 C -0.268 4.268 24 N -0.621 5.621 25 Si 0.801 3.199 26 H -0.216 1.216 27 H -0.221 1.221 28 H -0.193 1.193 29 C -0.039 4.039 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.255 0.745 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.042 0.958 48 H 0.028 0.972 49 H 0.205 0.795 50 H 0.060 0.940 51 H 0.099 0.901 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 23.284 3.787 13.780 27.320 hybrid contribution -0.988 0.586 -0.759 1.377 sum 22.297 4.374 13.020 26.188 Atomic orbital electron populations 1.22069 0.88392 1.06297 1.06821 1.21532 0.92110 0.82057 0.73755 1.90703 1.71870 1.32421 1.52062 1.48255 1.07585 1.06183 1.73013 1.22387 0.80045 1.02488 1.00360 1.23181 0.98527 0.82973 0.97780 1.88093 1.18598 1.30192 1.92681 1.22354 0.83683 0.93162 1.00672 0.86879 1.20200 0.82568 0.89945 0.76372 1.90737 1.60469 1.43910 1.48981 1.45915 1.09379 1.10615 1.69810 1.20974 0.93890 0.82688 0.98244 0.91342 1.22133 1.01256 1.01744 0.96632 1.21847 0.93049 1.03572 0.96962 1.21448 0.93904 1.02053 0.96982 1.21609 0.97319 1.00778 0.95414 1.20880 0.83804 0.97289 0.95877 1.42650 1.02622 1.78720 1.15229 1.19644 0.90952 1.34163 0.93027 0.90825 1.25559 0.96381 1.03446 1.01458 1.69810 1.01689 1.55907 1.34653 0.85167 0.77433 0.77891 0.79459 1.21562 1.22055 1.19346 1.22498 0.98609 0.83387 0.99391 0.86219 0.88841 0.87783 0.90296 0.88417 0.85332 0.91491 0.74534 0.90824 0.90713 0.94055 0.89847 0.89278 0.90601 0.92809 0.92918 0.91547 0.95823 0.97226 0.79457 0.93974 0.90134 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.47 71.23 0.67 -1.09 16 2 C 0.51 8.92 7.81 87.65 0.68 9.60 16 3 O -0.59 -15.57 16.57 -3.06 -0.05 -15.62 16 4 N -0.62 -8.78 3.02 -817.36 -2.47 -11.25 16 5 C 0.07 0.99 6.65 86.35 0.57 1.56 16 6 C 0.05 0.64 6.99 72.08 0.50 1.14 16 7 O -0.38 -6.91 9.92 -130.01 -1.29 -8.20 16 8 C 0.06 0.83 3.19 29.95 0.10 0.92 16 9 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 10 C 0.52 9.12 7.14 87.66 0.63 9.75 16 11 O -0.56 -15.75 16.17 15.93 0.26 -15.50 16 12 N -0.70 -7.97 4.49 -442.54 -1.99 -9.96 16 13 C 0.15 2.05 2.57 44.99 0.12 2.16 16 14 H 0.07 1.32 7.58 -2.38 -0.02 1.30 16 15 C -0.16 -2.08 9.48 71.98 0.68 -1.40 16 16 C -0.12 -1.50 4.75 30.59 0.15 -1.35 16 17 C -0.11 -1.91 5.10 30.59 0.16 -1.75 16 18 C -0.11 -3.01 5.33 30.59 0.16 -2.85 16 19 C 0.15 5.48 6.26 86.38 0.54 6.02 16 20 N -0.75 -37.28 5.60 -343.47 -1.92 -39.21 16 21 C -0.25 -13.61 9.99 84.03 0.84 -12.77 16 22 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 23 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 24 N -0.97 -58.67 13.06 21.65 0.28 -58.38 16 25 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 26 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 C 0.08 0.89 5.56 86.36 0.48 1.37 16 30 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.10 0.65 6.28 -2.39 -0.01 0.63 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.10 1.54 7.06 -2.38 -0.02 1.53 16 35 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.42 1.96 8.60 -92.71 -0.80 1.16 16 38 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 1.12 7.75 -2.39 -0.02 1.11 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.37 19.67 7.67 -92.70 -0.71 18.96 16 50 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 51 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.14 0.54 5.80 -2.38 -0.01 0.53 16 Total: -1.00 -81.75 420.79 1.00 -80.75 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.59 Total: 22.37 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.75 Total: 7.44 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -6.10 Total: -118.80 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.08 Total: -39.32 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -81.75 1.00 -80.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176400694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.061 kcal (2) G-P(sol) polarization free energy of solvation -81.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds