Wall clock time and date at job start Wed Apr 1 2020 01:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 120.00147 * 2 1 4 4 N 1.34778 * 120.00094 * 180.02562 * 2 1 3 5 5 C 1.47148 * 120.98134 * 359.97438 * 4 2 1 6 6 C 1.53296 * 108.38343 * 129.44785 * 5 4 2 7 7 O 1.42957 * 109.22233 * 52.30255 * 6 5 4 8 8 C 1.42969 * 114.16868 * 297.41998 * 7 6 5 9 9 H 1.09000 * 109.55387 * 302.63168 * 8 7 6 10 10 C 1.50698 * 109.51454 * 182.50831 * 8 7 6 11 11 O 1.21283 * 120.00130 * 355.24782 * 10 8 7 12 12 N 1.34777 * 120.00142 * 175.25992 * 10 8 7 13 13 C 1.46497 * 120.00303 * 179.97438 * 12 10 8 14 14 H 1.09004 * 109.46960 * 34.99112 * 13 12 10 15 15 C 1.53000 * 109.46760 * 274.99833 * 13 12 10 16 16 C 1.52996 * 109.47260 * 154.99150 * 13 12 10 17 17 C 1.52993 * 109.47260 * 295.00115 * 16 13 12 18 18 C 1.53008 * 109.47044 * 180.02562 * 17 16 13 19 19 C 1.52993 * 109.47044 * 180.02562 * 18 17 16 20 20 N 1.46502 * 109.47203 * 179.97438 * 19 18 17 21 21 C 1.36935 * 120.00254 * 179.97438 * 20 19 18 22 22 H 1.08004 * 120.00074 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00030 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99856 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00078 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47058 * 59.99539 * 25 23 21 27 27 H 1.48499 * 109.47212 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46741 * 299.99742 * 25 23 21 29 29 C 1.47151 * 120.97993 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47148 * 239.99905 * 1 2 3 31 31 H 1.09003 * 109.46956 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47077 * 119.99670 * 1 2 3 33 33 H 1.08996 * 109.68287 * 9.72859 * 5 4 2 34 34 H 1.08999 * 109.71553 * 249.18808 * 5 4 2 35 35 H 1.09001 * 109.51695 * 172.22824 * 6 5 4 36 36 H 1.09007 * 109.51187 * 292.38019 * 6 5 4 37 37 H 0.97002 * 119.99871 * 359.97438 * 12 10 8 38 38 H 1.08994 * 109.47300 * 59.99897 * 15 13 12 39 39 H 1.09005 * 109.46684 * 180.02562 * 15 13 12 40 40 H 1.08996 * 109.46607 * 299.99181 * 15 13 12 41 41 H 1.09001 * 109.47105 * 55.00041 * 16 13 12 42 42 H 1.09007 * 109.47135 * 174.99944 * 16 13 12 43 43 H 1.09004 * 109.47575 * 299.99522 * 17 16 13 44 44 H 1.08994 * 109.47729 * 60.00236 * 17 16 13 45 45 H 1.08995 * 109.46722 * 299.99987 * 18 17 16 46 46 H 1.08997 * 109.47298 * 60.00036 * 18 17 16 47 47 H 1.08995 * 109.47350 * 299.99602 * 19 18 17 48 48 H 1.09004 * 109.47872 * 60.00032 * 19 18 17 49 49 H 0.96999 * 120.00007 * 0.02562 * 20 19 18 50 50 H 0.97000 * 119.99732 * 180.02562 * 24 23 21 51 51 H 1.08999 * 109.68629 * 350.27788 * 29 4 2 52 52 H 1.09002 * 109.67831 * 110.83076 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4672 -2.4540 -0.0005 6 6 2.0405 -3.3248 -1.1243 7 8 3.4625 -3.3877 -0.9922 8 6 4.1191 -2.1247 -1.1251 9 1 3.8705 -1.6841 -2.0906 10 6 5.6104 -2.3201 -1.0302 11 8 6.0635 -3.4167 -0.7791 12 7 6.4405 -1.2762 -1.2240 13 6 7.8902 -1.4660 -1.1312 14 1 8.1527 -2.4525 -1.5134 15 6 8.3267 -1.3529 0.3308 16 6 8.5992 -0.3928 -1.9597 17 6 8.2599 -0.5839 -3.4393 18 6 8.9695 0.4890 -4.2679 19 6 8.6297 0.2984 -5.7474 20 7 9.3086 1.3260 -6.5407 21 6 9.1527 1.3552 -7.9008 22 1 8.5289 0.6208 -8.3888 23 6 9.7964 2.3285 -8.6526 24 7 10.5562 3.2238 -8.0579 25 14 9.5831 2.3687 -10.5080 26 1 8.1468 2.5526 -10.8373 27 1 10.3681 3.4960 -11.0722 28 1 10.0645 1.0898 -11.0893 29 6 3.6522 -1.1923 -0.0011 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 0.4045 -2.2843 -0.1735 34 1 1.6080 -2.9526 0.9584 35 1 1.6237 -4.3296 -1.0550 36 1 1.7834 -2.8890 -2.0898 37 1 6.0781 -0.3991 -1.4251 38 1 7.8216 -2.1175 0.9210 39 1 9.4054 -1.4937 0.3999 40 1 8.0642 -0.3665 0.7130 41 1 8.2684 0.5939 -1.6356 42 1 9.6768 -0.4789 -1.8200 43 1 8.5907 -1.5706 -3.7635 44 1 7.1824 -0.4978 -3.5791 45 1 8.6391 1.4759 -3.9438 46 1 10.0470 0.4025 -4.1281 47 1 8.9597 -0.6885 -6.0718 48 1 7.5521 0.3852 -5.8870 49 1 9.8692 1.9853 -6.1026 50 1 11.0057 3.9042 -8.5832 51 1 4.0366 -0.1872 -0.1743 52 1 4.0134 -1.5638 0.9580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176400695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:36 Heat of formation + Delta-G solvation = -115.747503 kcal Electronic energy + Delta-G solvation = -29965.216083 eV Core-core repulsion = 25771.808726 eV Total energy + Delta-G solvation = -4193.407358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13036 -39.93497 -38.59081 -36.92505 -35.39288 -35.17452 -33.45649 -32.73518 -31.31965 -30.45976 -30.20662 -28.13834 -27.44110 -25.24826 -24.23906 -23.38044 -22.18016 -21.08840 -20.74331 -20.62181 -19.88165 -18.03079 -17.48621 -17.24995 -16.97508 -16.69720 -16.13844 -16.12609 -15.67587 -15.06094 -14.91708 -14.82049 -14.61368 -14.13909 -14.08619 -13.89503 -13.60846 -13.39942 -13.25236 -13.11754 -12.93883 -12.86835 -12.72686 -12.53600 -12.36411 -12.17467 -11.76305 -11.47421 -11.46409 -11.25168 -10.99302 -10.80401 -10.77886 -10.69832 -10.42846 -10.40413 -10.28956 -10.00903 -9.97847 -9.64787 -9.30255 -9.18763 -8.83350 -6.88244 -5.73226 -3.01622 2.03501 2.14723 2.40743 2.44003 3.46157 3.49914 3.50251 3.51460 3.95160 4.04880 4.23058 4.31221 4.40047 4.50818 4.56713 4.60808 4.65680 4.67741 4.80584 4.88626 4.90677 4.98226 5.00855 5.10282 5.23837 5.25839 5.32337 5.39866 5.44993 5.56516 5.61598 5.68915 5.70094 5.78662 5.89099 5.95905 6.10728 6.19246 6.31989 6.33522 6.40508 6.45865 6.48318 6.72317 6.91705 6.95663 7.20775 7.57481 7.72265 7.92699 8.46245 9.56746 10.16186 10.50790 11.49840 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.002018 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.739380 B =13874.983973 C =15099.942662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.537 6.537 4 N -0.619 5.619 5 C 0.070 3.930 6 C 0.045 3.955 7 O -0.348 6.348 8 C 0.060 3.940 9 H 0.091 0.909 10 C 0.525 3.475 11 O -0.515 6.515 12 N -0.718 5.718 13 C 0.142 3.858 14 H 0.090 0.910 15 C -0.164 4.164 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.126 4.126 19 C 0.152 3.848 20 N -0.735 5.735 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.090 3.910 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.402 0.598 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.015 0.985 49 H 0.383 0.617 50 H 0.255 0.745 51 H 0.108 0.892 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.941 -12.428 23.250 33.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.304 3.696 3 O -0.414 6.414 4 N -0.355 5.355 5 C -0.053 4.053 6 C -0.033 4.033 7 O -0.265 6.265 8 C -0.002 4.002 9 H 0.109 0.891 10 C 0.308 3.692 11 O -0.389 6.389 12 N -0.371 5.371 13 C 0.039 3.961 14 H 0.109 0.891 15 C -0.222 4.222 16 C -0.165 4.165 17 C -0.153 4.153 18 C -0.164 4.164 19 C 0.025 3.975 20 N -0.379 5.379 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.034 4.034 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.079 0.921 37 H 0.237 0.763 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.034 0.966 48 H 0.033 0.967 49 H 0.217 0.783 50 H 0.065 0.935 51 H 0.127 0.873 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.239 -12.868 23.301 33.438 hybrid contribution -0.334 0.857 -1.095 1.430 sum -20.573 -12.010 22.206 32.567 Atomic orbital electron populations 1.21952 0.91172 1.05916 1.04243 1.20924 0.90838 0.82655 0.75210 1.90758 1.70674 1.30762 1.49182 1.48182 1.06364 1.06381 1.74578 1.22547 0.97670 0.84139 1.00933 1.23098 0.81235 1.01572 0.97374 1.88125 1.18386 1.26838 1.93188 1.22315 0.91627 0.86459 0.99818 0.89086 1.19813 0.87136 0.84885 0.77336 1.90741 1.77377 1.24551 1.46205 1.46049 1.07027 1.11749 1.72316 1.21090 0.78357 1.00924 0.95760 0.89144 1.22183 1.01858 1.02141 0.96018 1.21949 1.01107 0.98171 0.95297 1.21525 1.00573 0.99740 0.93417 1.21726 1.00368 0.98317 0.95949 1.20646 0.95257 0.92586 0.89035 1.42384 1.57444 1.34008 1.04057 1.19208 1.23802 1.10628 0.83382 0.91306 1.24756 1.00193 0.98194 0.98057 1.69654 1.35318 1.18881 1.34536 0.86250 0.77393 0.76973 0.85479 1.21295 1.21664 1.21268 1.22144 0.80559 1.01612 0.99048 0.89208 0.88610 0.89148 0.88168 0.89934 0.86724 0.92089 0.76314 0.92255 0.91346 0.92348 0.91198 0.90019 0.91934 0.92201 0.92095 0.92013 0.96581 0.96674 0.78336 0.93493 0.87339 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 8.69 36.01 0.31 -0.33 16 2 C 0.51 4.11 7.82 -10.98 -0.09 4.03 16 3 O -0.54 -6.72 16.55 5.56 0.09 -6.62 16 4 N -0.62 -4.18 3.02 -172.27 -0.52 -4.70 16 5 C 0.07 0.27 6.54 -3.53 -0.02 0.24 16 6 C 0.04 0.23 6.98 37.31 0.26 0.49 16 7 O -0.35 -3.35 9.92 -55.07 -0.55 -3.89 16 8 C 0.06 0.53 3.19 -27.72 -0.09 0.44 16 9 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 10 C 0.52 5.77 7.14 -10.99 -0.08 5.69 16 11 O -0.51 -7.73 16.17 -14.28 -0.23 -7.97 16 12 N -0.72 -6.52 4.49 -53.81 -0.24 -6.76 16 13 C 0.14 1.37 2.57 -67.93 -0.17 1.19 16 14 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 15 C -0.16 -1.42 9.48 37.16 0.35 -1.06 16 16 C -0.13 -1.24 4.75 -26.74 -0.13 -1.36 16 17 C -0.11 -1.41 5.10 -26.73 -0.14 -1.55 16 18 C -0.13 -2.02 5.33 -26.73 -0.14 -2.16 16 19 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 20 N -0.73 -19.43 5.60 -59.91 -0.34 -19.76 16 21 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 22 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.94 -28.95 13.06 55.49 0.72 -28.22 16 25 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 29 C 0.09 0.71 5.89 -3.52 -0.02 0.68 16 30 H 0.09 0.16 8.01 -51.93 -0.42 -0.26 16 31 H 0.10 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.09 0.17 7.66 -51.93 -0.40 -0.23 16 33 H 0.10 0.09 6.05 -51.93 -0.31 -0.22 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.40 2.95 8.60 -40.82 -0.35 2.60 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 50 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 51 H 0.11 0.90 7.08 -51.93 -0.37 0.53 16 52 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 421.74 15.07 6.36 6.36 Total: -1.00 -38.18 421.74 -9.21 -47.40 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -9.26 Total: 4.53 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -0.22 Total: 1.79 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.37 Total: -59.45 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.69 Total: -18.48 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -38.18 -9.21 -47.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176400695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.352 kcal (2) G-P(sol) polarization free energy of solvation -38.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds