Wall clock time and date at job start Wed Apr 1 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 120.00147 * 2 1 4 4 N 1.34778 * 120.00094 * 180.02562 * 2 1 3 5 5 C 1.47148 * 120.98134 * 359.97438 * 4 2 1 6 6 C 1.53296 * 108.38343 * 129.44785 * 5 4 2 7 7 O 1.42957 * 109.22233 * 52.30255 * 6 5 4 8 8 C 1.42969 * 114.16868 * 297.41998 * 7 6 5 9 9 H 1.09000 * 109.55387 * 302.63168 * 8 7 6 10 10 C 1.50698 * 109.51454 * 182.50831 * 8 7 6 11 11 O 1.21283 * 120.00130 * 355.24782 * 10 8 7 12 12 N 1.34777 * 120.00142 * 175.25992 * 10 8 7 13 13 C 1.46497 * 120.00303 * 179.97438 * 12 10 8 14 14 H 1.09004 * 109.46960 * 34.99112 * 13 12 10 15 15 C 1.53000 * 109.46760 * 274.99833 * 13 12 10 16 16 C 1.52996 * 109.47260 * 154.99150 * 13 12 10 17 17 C 1.52993 * 109.47260 * 295.00115 * 16 13 12 18 18 C 1.53008 * 109.47044 * 180.02562 * 17 16 13 19 19 C 1.52993 * 109.47044 * 180.02562 * 18 17 16 20 20 N 1.46502 * 109.47203 * 179.97438 * 19 18 17 21 21 C 1.36935 * 120.00254 * 179.97438 * 20 19 18 22 22 H 1.08004 * 120.00074 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00030 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99856 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 120.00078 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47058 * 59.99539 * 25 23 21 27 27 H 1.48499 * 109.47212 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46741 * 299.99742 * 25 23 21 29 29 C 1.47151 * 120.97993 * 179.97438 * 4 2 1 30 30 H 1.08996 * 109.47148 * 239.99905 * 1 2 3 31 31 H 1.09003 * 109.46956 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47077 * 119.99670 * 1 2 3 33 33 H 1.08996 * 109.68287 * 9.72859 * 5 4 2 34 34 H 1.08999 * 109.71553 * 249.18808 * 5 4 2 35 35 H 1.09001 * 109.51695 * 172.22824 * 6 5 4 36 36 H 1.09007 * 109.51187 * 292.38019 * 6 5 4 37 37 H 0.97002 * 119.99871 * 359.97438 * 12 10 8 38 38 H 1.08994 * 109.47300 * 59.99897 * 15 13 12 39 39 H 1.09005 * 109.46684 * 180.02562 * 15 13 12 40 40 H 1.08996 * 109.46607 * 299.99181 * 15 13 12 41 41 H 1.09001 * 109.47105 * 55.00041 * 16 13 12 42 42 H 1.09007 * 109.47135 * 174.99944 * 16 13 12 43 43 H 1.09004 * 109.47575 * 299.99522 * 17 16 13 44 44 H 1.08994 * 109.47729 * 60.00236 * 17 16 13 45 45 H 1.08995 * 109.46722 * 299.99987 * 18 17 16 46 46 H 1.08997 * 109.47298 * 60.00036 * 18 17 16 47 47 H 1.08995 * 109.47350 * 299.99602 * 19 18 17 48 48 H 1.09004 * 109.47872 * 60.00032 * 19 18 17 49 49 H 0.96999 * 120.00007 * 0.02562 * 20 19 18 50 50 H 0.97000 * 119.99732 * 180.02562 * 24 23 21 51 51 H 1.08999 * 109.68629 * 350.27788 * 29 4 2 52 52 H 1.09002 * 109.67831 * 110.83076 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4672 -2.4540 -0.0005 6 6 2.0405 -3.3248 -1.1243 7 8 3.4625 -3.3877 -0.9922 8 6 4.1191 -2.1247 -1.1251 9 1 3.8705 -1.6841 -2.0906 10 6 5.6104 -2.3201 -1.0302 11 8 6.0635 -3.4167 -0.7791 12 7 6.4405 -1.2762 -1.2240 13 6 7.8902 -1.4660 -1.1312 14 1 8.1527 -2.4525 -1.5134 15 6 8.3267 -1.3529 0.3308 16 6 8.5992 -0.3928 -1.9597 17 6 8.2599 -0.5839 -3.4393 18 6 8.9695 0.4890 -4.2679 19 6 8.6297 0.2984 -5.7474 20 7 9.3086 1.3260 -6.5407 21 6 9.1527 1.3552 -7.9008 22 1 8.5289 0.6208 -8.3888 23 6 9.7964 2.3285 -8.6526 24 7 10.5562 3.2238 -8.0579 25 14 9.5831 2.3687 -10.5080 26 1 8.1468 2.5526 -10.8373 27 1 10.3681 3.4960 -11.0722 28 1 10.0645 1.0898 -11.0893 29 6 3.6522 -1.1923 -0.0011 30 1 -0.3633 -0.5138 0.8899 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 0.4045 -2.2843 -0.1735 34 1 1.6080 -2.9526 0.9584 35 1 1.6237 -4.3296 -1.0550 36 1 1.7834 -2.8890 -2.0898 37 1 6.0781 -0.3991 -1.4251 38 1 7.8216 -2.1175 0.9210 39 1 9.4054 -1.4937 0.3999 40 1 8.0642 -0.3665 0.7130 41 1 8.2684 0.5939 -1.6356 42 1 9.6768 -0.4789 -1.8200 43 1 8.5907 -1.5706 -3.7635 44 1 7.1824 -0.4978 -3.5791 45 1 8.6391 1.4759 -3.9438 46 1 10.0470 0.4025 -4.1281 47 1 8.9597 -0.6885 -6.0718 48 1 7.5521 0.3852 -5.8870 49 1 9.8692 1.9853 -6.1026 50 1 11.0057 3.9042 -8.5832 51 1 4.0366 -0.1872 -0.1743 52 1 4.0134 -1.5638 0.9580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176400695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:35 Heat of formation + Delta-G solvation = -143.101358 kcal Electronic energy + Delta-G solvation = -29966.402236 eV Core-core repulsion = 25771.808726 eV Total energy + Delta-G solvation = -4194.593510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78188 -40.69854 -39.25946 -37.99362 -36.84303 -35.92115 -34.84179 -33.69367 -32.63556 -31.50089 -30.80072 -28.84729 -28.67315 -26.01863 -25.73695 -24.10601 -23.52052 -22.11110 -21.94189 -21.51968 -20.39553 -19.14219 -18.68667 -18.17818 -17.83903 -17.33865 -16.91209 -16.71481 -16.66512 -16.28158 -16.18516 -15.69366 -15.53944 -15.34879 -15.23433 -14.78509 -14.60249 -14.56944 -14.18718 -14.15352 -13.86899 -13.64413 -13.27591 -13.08165 -13.04695 -12.94161 -12.89480 -12.84720 -12.69172 -12.46206 -12.30326 -12.21106 -11.94824 -11.89437 -11.83796 -11.51089 -11.42262 -11.40618 -11.07539 -10.94417 -10.80334 -10.16595 -9.76080 -9.03183 -7.97627 -5.27231 1.34489 1.45289 1.49104 1.53040 1.55423 1.72948 1.82096 2.54345 2.90939 3.35304 3.40513 3.52925 3.59765 3.63955 3.79560 3.93673 4.01632 4.03924 4.12614 4.16227 4.25786 4.29867 4.33829 4.40080 4.45965 4.51888 4.58986 4.63265 4.63677 4.71857 4.75698 4.85610 4.86023 4.91692 4.97180 5.00091 5.07472 5.09182 5.20415 5.25355 5.30971 5.40635 5.44126 5.51192 5.53244 5.90290 6.23802 6.25075 6.43797 7.01755 7.11055 7.30577 8.07199 8.30770 9.25816 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.002018 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.739380 B =13874.983973 C =15099.942662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.507 3.493 3 O -0.593 6.593 4 N -0.618 5.618 5 C 0.070 3.930 6 C 0.037 3.963 7 O -0.378 6.378 8 C 0.069 3.931 9 H 0.099 0.901 10 C 0.523 3.477 11 O -0.560 6.560 12 N -0.708 5.708 13 C 0.145 3.855 14 H 0.071 0.929 15 C -0.158 4.158 16 C -0.117 4.117 17 C -0.106 4.106 18 C -0.113 4.113 19 C 0.148 3.852 20 N -0.750 5.750 21 C -0.252 4.252 22 H 0.073 0.927 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.977 3.023 26 H -0.277 1.277 27 H -0.292 1.292 28 H -0.277 1.277 29 C 0.094 3.906 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.412 0.588 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.014 0.986 48 H 0.017 0.983 49 H 0.374 0.626 50 H 0.253 0.747 51 H 0.101 0.899 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.013 -13.047 23.498 35.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.474 6.474 4 N -0.352 5.352 5 C -0.051 4.051 6 C -0.040 4.040 7 O -0.297 6.297 8 C 0.007 3.993 9 H 0.117 0.883 10 C 0.308 3.692 11 O -0.438 6.438 12 N -0.361 5.361 13 C 0.041 3.959 14 H 0.090 0.910 15 C -0.216 4.216 16 C -0.155 4.155 17 C -0.144 4.144 18 C -0.150 4.150 19 C 0.022 3.978 20 N -0.392 5.392 21 C -0.384 4.384 22 H 0.091 0.909 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.805 3.195 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.031 4.031 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.106 0.894 35 H 0.154 0.846 36 H 0.085 0.915 37 H 0.249 0.751 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.032 0.968 48 H 0.035 0.965 49 H 0.206 0.794 50 H 0.061 0.939 51 H 0.120 0.880 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.359 -13.525 23.558 35.183 hybrid contribution 0.271 0.971 -1.147 1.528 sum -22.088 -12.553 22.411 33.878 Atomic orbital electron populations 1.21996 0.87570 1.06352 1.06650 1.21762 0.92548 0.81957 0.73893 1.90730 1.72026 1.32707 1.51898 1.48316 1.05866 1.07402 1.73621 1.22782 0.99217 0.82383 1.00764 1.23412 0.79063 1.03285 0.98201 1.88089 1.20931 1.27210 1.93423 1.22201 0.90070 0.86656 1.00402 0.88344 1.20251 0.88257 0.84372 0.76343 1.90713 1.78287 1.26280 1.48515 1.46019 1.06878 1.11926 1.71297 1.21019 0.78553 0.99895 0.96434 0.91044 1.22120 1.02376 1.02269 0.94812 1.21854 1.01667 0.98770 0.93185 1.21432 1.00342 0.98040 0.94559 1.21600 1.00609 0.99637 0.93203 1.20856 0.94664 0.90907 0.91408 1.42631 1.57772 1.34964 1.03858 1.19622 1.23387 1.10494 0.84851 0.90884 1.25643 1.00344 0.98113 1.02876 1.69814 1.36465 1.19606 1.36129 0.85162 0.77594 0.76998 0.79712 1.20260 1.21833 1.20324 1.21989 0.81854 1.00806 0.98409 0.86591 0.89321 0.86593 0.84511 0.89394 0.84611 0.91495 0.75116 0.93726 0.90274 0.91177 0.89867 0.89208 0.92413 0.91748 0.91999 0.92282 0.96833 0.96543 0.79416 0.93862 0.88043 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 8.69 71.24 0.62 -0.16 16 2 C 0.51 7.49 7.82 87.66 0.69 8.18 16 3 O -0.59 -14.95 16.55 -3.03 -0.05 -15.00 16 4 N -0.62 -7.48 3.02 -817.31 -2.47 -9.95 16 5 C 0.07 0.35 6.54 86.36 0.56 0.91 16 6 C 0.04 0.30 6.98 72.08 0.50 0.81 16 7 O -0.38 -7.07 9.92 -130.02 -1.29 -8.36 16 8 C 0.07 1.20 3.19 29.95 0.10 1.30 16 9 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 10 C 0.52 11.66 7.14 87.66 0.63 12.28 16 11 O -0.56 -17.38 16.17 15.93 0.26 -17.12 16 12 N -0.71 -12.62 4.49 -442.54 -1.99 -14.61 16 13 C 0.14 2.70 2.57 44.99 0.12 2.82 16 14 H 0.07 1.65 7.58 -2.38 -0.02 1.63 16 15 C -0.16 -2.59 9.48 71.98 0.68 -1.91 16 16 C -0.12 -2.09 4.75 30.59 0.15 -1.95 16 17 C -0.11 -2.49 5.10 30.59 0.16 -2.34 16 18 C -0.11 -3.53 5.33 30.59 0.16 -3.36 16 19 C 0.15 6.14 6.26 86.38 0.54 6.68 16 20 N -0.75 -39.91 5.60 -343.46 -1.92 -41.83 16 21 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 24 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 25 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 29 C 0.09 1.45 5.89 86.36 0.51 1.96 16 30 H 0.12 -0.04 8.01 -2.39 -0.02 -0.06 16 31 H 0.09 0.59 8.12 -2.39 -0.02 0.57 16 32 H 0.12 -0.03 7.66 -2.38 -0.02 -0.05 16 33 H 0.14 -0.33 6.05 -2.39 -0.01 -0.34 16 34 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.14 0.49 8.14 -2.39 -0.02 0.48 16 36 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.41 5.74 8.60 -92.71 -0.80 4.94 16 38 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.06 1.43 8.14 -2.38 -0.02 1.42 16 44 H 0.06 1.47 7.75 -2.39 -0.02 1.45 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.37 20.91 7.67 -92.71 -0.71 20.20 16 50 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 51 H 0.10 1.71 7.08 -2.39 -0.02 1.69 16 52 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -84.57 421.74 0.96 -83.61 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -0.60 Total: 27.27 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 6.71 Total: 7.30 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.10 Total: -126.72 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.08 Total: -40.48 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -84.57 0.96 -83.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176400695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.495 kcal (2) G-P(sol) polarization free energy of solvation -84.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds