Wall clock time and date at job start Wed Apr 1 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 120.00335 * 2 1 4 4 N 1.34771 * 119.99772 * 180.02562 * 2 1 3 5 5 C 1.47154 * 120.98670 * 354.39656 * 4 2 1 6 6 C 1.53296 * 108.38748 * 230.56062 * 5 4 2 7 7 O 1.42952 * 109.26214 * 307.71933 * 6 5 4 8 8 C 1.42960 * 114.17310 * 62.49965 * 7 6 5 9 9 H 1.09005 * 109.51164 * 57.44738 * 8 7 6 10 10 C 1.50700 * 109.51355 * 177.55030 * 8 7 6 11 11 O 1.21274 * 119.99874 * 4.89636 * 10 8 7 12 12 N 1.34774 * 119.99601 * 184.90057 * 10 8 7 13 13 C 1.46497 * 119.99775 * 179.97438 * 12 10 8 14 14 H 1.09005 * 109.47243 * 35.00467 * 13 12 10 15 15 C 1.52994 * 109.47769 * 275.00129 * 13 12 10 16 16 C 1.53005 * 109.47026 * 154.99866 * 13 12 10 17 17 C 1.52995 * 109.47245 * 295.00115 * 16 13 12 18 18 C 1.53001 * 109.47496 * 180.02562 * 17 16 13 19 19 C 1.52998 * 109.47321 * 180.02562 * 18 17 16 20 20 N 1.46504 * 109.46709 * 179.97438 * 19 18 17 21 21 C 1.36943 * 119.99769 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99637 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99760 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00463 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99690 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47222 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47381 * 119.99798 * 25 23 21 28 28 H 1.48497 * 109.47190 * 239.99787 * 25 23 21 29 29 C 1.47157 * 120.98263 * 174.42287 * 4 2 1 30 30 H 1.09002 * 109.47198 * 184.86218 * 1 2 3 31 31 H 1.09005 * 109.46871 * 304.85828 * 1 2 3 32 32 H 1.09001 * 109.47184 * 64.85731 * 1 2 3 33 33 H 1.09004 * 109.68232 * 350.28545 * 5 4 2 34 34 H 1.09005 * 109.68373 * 110.79590 * 5 4 2 35 35 H 1.08996 * 109.51153 * 67.62373 * 6 5 4 36 36 H 1.09000 * 109.50648 * 187.77315 * 6 5 4 37 37 H 0.97002 * 120.00609 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.47821 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47014 * 300.00478 * 15 13 12 40 40 H 1.08999 * 109.46947 * 59.99729 * 15 13 12 41 41 H 1.09004 * 109.46988 * 175.00228 * 16 13 12 42 42 H 1.08997 * 109.46902 * 55.00527 * 16 13 12 43 43 H 1.09004 * 109.47297 * 59.99659 * 17 16 13 44 44 H 1.09006 * 109.47597 * 300.00206 * 17 16 13 45 45 H 1.09004 * 109.47311 * 59.99440 * 18 17 16 46 46 H 1.09006 * 109.46681 * 300.00540 * 18 17 16 47 47 H 1.08994 * 109.47391 * 59.99802 * 19 18 17 48 48 H 1.09000 * 109.47081 * 299.99144 * 19 18 17 49 49 H 0.96996 * 120.00068 * 0.02562 * 20 19 18 50 50 H 0.96998 * 119.99977 * 180.02562 * 24 23 21 51 51 H 1.08997 * 109.67959 * 9.71816 * 29 4 2 52 52 H 1.09006 * 109.70957 * 249.18184 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4723 -2.4511 0.1221 6 6 2.1406 -3.2680 1.2338 7 8 3.5466 -3.3401 0.9859 8 6 4.2094 -2.0735 1.0005 9 1 4.0426 -1.5864 1.9613 10 6 5.6876 -2.2764 0.7888 11 8 6.1197 -3.3845 0.5517 12 7 6.5293 -1.2264 0.8633 13 6 7.9664 -1.4237 0.6581 14 1 8.1233 -2.1989 -0.0920 15 6 8.6160 -1.8503 1.9759 16 6 8.5975 -0.1150 0.1785 17 6 8.0378 0.2465 -1.1988 18 6 8.6693 1.5548 -1.6787 19 6 8.1092 1.9166 -3.0557 20 7 8.7135 3.1697 -3.5148 21 6 8.3628 3.6939 -4.7304 22 1 7.6405 3.1837 -5.3503 23 6 8.9358 4.8809 -5.1656 24 7 9.8157 5.5030 -4.4098 25 14 8.4570 5.5964 -6.8234 26 1 7.4560 4.7127 -7.4734 27 1 7.8728 6.9478 -6.6293 28 1 9.6617 5.6970 -7.6857 29 6 3.6470 -1.1954 -0.1231 30 1 -0.3634 -1.0240 0.0871 31 1 -0.3633 0.5874 0.8433 32 1 -0.3633 0.4366 -0.9303 33 1 0.4277 -2.2711 0.3761 34 1 1.5323 -2.9950 -0.8207 35 1 1.9655 -2.7857 2.1955 36 1 1.7214 -4.2740 1.2485 37 1 6.1837 -0.3401 1.0527 38 1 9.6853 -1.9967 1.8234 39 1 8.4591 -1.0751 2.7260 40 1 8.1664 -2.7826 2.3175 41 1 9.6786 -0.2364 0.1109 42 1 8.3647 0.6811 0.8857 43 1 6.9567 0.3677 -1.1313 44 1 8.2705 -0.5497 -1.9060 45 1 9.7504 1.4331 -1.7463 46 1 8.4370 2.3512 -0.9715 47 1 7.0282 2.0384 -2.9877 48 1 8.3413 1.1204 -3.7630 49 1 9.3625 3.6277 -2.9581 50 1 10.2158 6.3326 -4.7139 51 1 4.0426 -0.1839 -0.0315 52 1 3.9271 -1.6129 -1.0904 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176400696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:41 Heat of formation + Delta-G solvation = -109.872571 kcal Electronic energy + Delta-G solvation = -30295.954404 eV Core-core repulsion = 26102.801802 eV Total energy + Delta-G solvation = -4193.152602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09398 -39.90235 -38.54563 -36.91588 -35.35388 -35.15273 -33.43761 -32.73894 -31.30624 -30.38189 -30.17261 -28.10570 -27.43137 -25.20458 -24.22628 -23.36498 -22.15690 -21.05572 -20.75218 -20.61123 -19.78375 -18.01434 -17.49974 -17.26554 -16.94929 -16.57354 -16.22474 -16.04798 -15.57718 -15.04401 -14.97127 -14.74631 -14.49962 -14.20652 -14.07031 -13.90422 -13.59642 -13.45995 -13.20680 -13.10371 -12.93393 -12.88409 -12.55878 -12.37925 -12.26823 -12.06973 -11.75677 -11.46976 -11.42568 -11.23902 -10.98555 -10.79562 -10.75455 -10.68492 -10.38433 -10.30372 -10.27095 -9.96891 -9.92811 -9.63814 -9.30691 -9.10711 -8.82364 -6.86039 -5.71761 -2.99872 2.12065 2.20054 2.43282 2.46697 3.46675 3.51449 3.51989 3.54557 4.01910 4.09965 4.23682 4.33819 4.36101 4.49074 4.55976 4.59652 4.68140 4.83329 4.88745 4.95302 4.97654 4.99729 5.02218 5.17327 5.26104 5.32394 5.40143 5.41661 5.45498 5.57892 5.62672 5.70229 5.77069 5.79810 5.89741 5.96330 6.11509 6.20133 6.33711 6.34803 6.42325 6.46917 6.50296 6.81349 6.94060 6.98064 7.21168 7.67770 7.75328 7.93108 8.47800 9.58531 10.17975 10.52576 11.51545 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.002464 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.598671 B =11361.981837 C =13825.039699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.514 3.486 3 O -0.534 6.534 4 N -0.619 5.619 5 C 0.065 3.935 6 C 0.046 3.954 7 O -0.349 6.349 8 C 0.062 3.938 9 H 0.088 0.912 10 C 0.525 3.475 11 O -0.515 6.515 12 N -0.718 5.718 13 C 0.142 3.858 14 H 0.091 0.909 15 C -0.164 4.164 16 C -0.127 4.127 17 C -0.115 4.115 18 C -0.126 4.126 19 C 0.152 3.848 20 N -0.735 5.735 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.087 3.913 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.110 0.890 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 -19.979 17.898 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.303 3.697 3 O -0.410 6.410 4 N -0.355 5.355 5 C -0.057 4.057 6 C -0.031 4.031 7 O -0.266 6.266 8 C 0.000 4.000 9 H 0.106 0.894 10 C 0.308 3.692 11 O -0.389 6.389 12 N -0.372 5.372 13 C 0.039 3.961 14 H 0.109 0.891 15 C -0.222 4.222 16 C -0.165 4.165 17 C -0.153 4.153 18 C -0.163 4.163 19 C 0.025 3.975 20 N -0.379 5.379 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.036 4.036 30 H 0.100 0.900 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.132 0.868 37 H 0.237 0.763 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.216 0.784 50 H 0.064 0.936 51 H 0.128 0.872 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.543 -20.375 17.513 32.087 hybrid contribution -0.422 1.232 -0.609 1.437 sum -17.965 -19.143 16.904 31.224 Atomic orbital electron populations 1.22027 0.91303 1.04518 1.05816 1.20909 0.90805 0.82737 0.75235 1.90783 1.70459 1.30716 1.49050 1.48194 1.06807 1.06465 1.74050 1.22659 0.97623 0.84516 1.00948 1.23085 0.81376 1.01829 0.96840 1.88116 1.19777 1.26208 1.92524 1.22293 0.91331 0.86584 0.99825 0.89392 1.19827 0.86889 0.85108 0.77375 1.90738 1.77888 1.23925 1.46337 1.46050 1.07784 1.10608 1.72712 1.21091 0.78436 0.98845 0.97769 0.89137 1.22181 1.01058 1.01714 0.97230 1.21950 1.01118 0.95661 0.97776 1.21528 1.00231 0.98098 0.95418 1.21725 1.00373 0.96183 0.98064 1.20647 0.95478 0.89275 0.92120 1.42398 1.51061 1.23674 1.20759 1.19304 1.19239 1.03656 0.94573 0.91198 1.24745 0.99650 0.98084 0.98763 1.69672 1.32296 1.18930 1.37521 0.86110 0.77542 0.78844 0.83703 1.20560 1.21865 1.21881 1.22168 0.80409 1.02183 0.98826 0.89992 0.88518 0.88245 0.87777 0.89865 0.92292 0.86777 0.76307 0.91342 0.92410 0.92251 0.90029 0.91225 0.92145 0.91942 0.92042 0.92092 0.96590 0.96607 0.78357 0.93618 0.87151 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.85 10.11 36.01 0.36 -0.48 16 2 C 0.51 4.74 7.81 -10.99 -0.09 4.65 16 3 O -0.53 -7.51 16.57 5.56 0.09 -7.41 16 4 N -0.62 -4.83 3.02 -172.27 -0.52 -5.35 16 5 C 0.07 0.29 6.48 -3.53 -0.02 0.27 16 6 C 0.05 0.24 6.98 37.31 0.26 0.50 16 7 O -0.35 -3.37 9.92 -55.07 -0.55 -3.92 16 8 C 0.06 0.55 3.19 -27.73 -0.09 0.47 16 9 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 10 C 0.52 5.80 7.14 -10.99 -0.08 5.72 16 11 O -0.51 -7.76 16.17 -14.27 -0.23 -7.99 16 12 N -0.72 -6.55 4.49 -53.81 -0.24 -6.79 16 13 C 0.14 1.37 2.57 -67.93 -0.17 1.20 16 14 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 15 C -0.16 -1.42 9.48 37.15 0.35 -1.07 16 16 C -0.13 -1.24 4.75 -26.73 -0.13 -1.37 16 17 C -0.11 -1.43 5.10 -26.73 -0.14 -1.57 16 18 C -0.13 -2.04 5.33 -26.73 -0.14 -2.18 16 19 C 0.15 3.22 6.26 -4.04 -0.03 3.20 16 20 N -0.74 -19.63 5.60 -59.91 -0.34 -19.96 16 21 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 22 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 24 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 25 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 29 C 0.09 0.79 5.90 -3.53 -0.02 0.77 16 30 H 0.08 0.16 5.21 -51.93 -0.27 -0.11 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.16 5.28 -51.93 -0.27 -0.11 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.40 2.97 8.60 -40.82 -0.35 2.62 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.74 7.75 -51.93 -0.40 0.34 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.64 7.67 -40.82 -0.31 10.32 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.11 1.08 7.06 -51.93 -0.37 0.72 16 52 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 420.02 15.07 6.33 6.33 Total: -1.00 -38.66 420.02 -9.03 -47.69 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -9.10 Total: 5.35 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -0.17 Total: 2.42 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.37 Total: -60.56 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.69 Total: -19.32 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -38.66 -9.03 -47.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176400696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.183 kcal (2) G-P(sol) polarization free energy of solvation -38.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds