Wall clock time and date at job start Wed Apr 1 2020 00:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41657 * 2 1 4 4 C 1.54476 * 110.37236 * 237.68993 * 2 1 3 5 5 C 1.54686 * 104.07718 * 217.09958 * 4 2 1 6 6 C 1.54473 * 103.98180 * 0.13463 * 5 4 2 7 7 H 1.09000 * 110.36971 * 264.96767 * 6 5 4 8 8 C 1.52991 * 110.37588 * 142.73929 * 6 5 4 9 9 C 1.52994 * 109.47475 * 176.55088 * 8 6 5 10 10 C 1.50700 * 109.47431 * 179.97438 * 9 8 6 11 11 O 1.21275 * 119.99913 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00148 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99793 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47033 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47182 * 179.97438 * 14 13 12 16 16 N 1.46906 * 109.46978 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99793 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47268 * 89.99721 * 25 23 21 27 27 H 1.48498 * 109.47211 * 209.99980 * 25 23 21 28 28 H 1.48505 * 109.46734 * 329.99774 * 25 23 21 29 29 O 1.44425 * 110.37122 * 122.30760 * 2 1 3 30 30 H 1.08996 * 109.47120 * 299.14927 * 1 2 3 31 31 H 1.09008 * 109.47025 * 59.14495 * 1 2 3 32 32 H 1.08994 * 109.47335 * 179.14484 * 1 2 3 33 33 H 1.09006 * 110.51070 * 335.83097 * 4 2 1 34 34 H 1.08999 * 110.51649 * 98.54398 * 4 2 1 35 35 H 1.09004 * 110.61278 * 241.48357 * 5 4 2 36 36 H 1.09004 * 110.48833 * 118.72520 * 5 4 2 37 37 H 1.09005 * 109.47188 * 56.54658 * 8 6 5 38 38 H 1.09002 * 109.47330 * 296.54949 * 8 6 5 39 39 H 1.09005 * 109.47264 * 59.99617 * 9 8 6 40 40 H 1.09002 * 109.47187 * 299.99958 * 9 8 6 41 41 H 0.97005 * 119.99795 * 0.02562 * 12 10 9 42 42 H 1.08995 * 109.47572 * 60.00868 * 13 12 10 43 43 H 1.09006 * 109.47277 * 299.99710 * 13 12 10 44 44 H 1.09005 * 109.46845 * 60.00226 * 14 13 12 45 45 H 1.09002 * 109.46933 * 300.00326 * 14 13 12 46 46 H 1.08995 * 109.46859 * 60.00453 * 15 14 13 47 47 H 1.09002 * 109.47639 * 300.00121 * 15 14 13 48 48 H 1.00899 * 110.99995 * 56.04730 * 16 15 14 49 49 H 1.09002 * 109.47401 * 59.99808 * 17 16 15 50 50 H 1.09001 * 109.46874 * 299.99821 * 17 16 15 51 51 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 52 52 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3206 -1.5048 -0.6862 6 6 3.3873 -1.0871 0.7995 7 1 4.0528 -0.2329 0.9239 8 6 3.8601 -2.2592 1.6617 9 6 4.0011 -1.7998 3.1141 10 6 4.4662 -2.9545 3.9635 11 8 4.6657 -4.0382 3.4568 12 7 4.6615 -2.7827 5.2859 13 6 5.1141 -3.9051 6.1114 14 6 5.2550 -3.4457 7.5640 15 6 5.7271 -4.6180 8.4262 16 7 5.8619 -4.1770 9.8210 17 6 6.3151 -5.2790 10.6801 18 6 6.4420 -4.7896 12.0998 19 8 6.1801 -3.6364 12.3695 20 7 6.8455 -5.6337 13.0700 21 6 6.9604 -5.1886 14.3617 22 1 6.7280 -4.1615 14.6016 23 6 7.3769 -6.0585 15.3618 24 7 7.6601 -7.3081 15.0698 25 14 7.5328 -5.4524 17.1218 26 1 6.2427 -5.6511 17.8299 27 1 8.6010 -6.2158 17.8155 28 1 7.8786 -4.0082 17.1191 29 8 2.0327 -0.7236 1.1443 30 1 -0.3633 0.5005 0.8975 31 1 -0.3633 0.5271 -0.8823 32 1 -0.3634 -1.0275 -0.0153 33 1 1.3275 -1.4920 -1.5772 34 1 2.3429 -0.0840 -2.0216 35 1 4.2142 -1.1751 -1.2162 36 1 3.1997 -2.5845 -0.7744 37 1 4.8246 -2.6127 1.2970 38 1 3.1319 -3.0684 1.6057 39 1 3.0366 -1.4463 3.4788 40 1 4.7294 -0.9906 3.1702 41 1 4.5022 -1.9158 5.6911 42 1 6.0785 -4.2587 5.7467 43 1 4.3856 -4.7141 6.0557 44 1 4.2904 -3.0924 7.9285 45 1 5.9832 -2.6365 7.6201 46 1 6.6916 -4.9717 8.0619 47 1 4.9987 -5.4269 8.3701 48 1 4.9967 -3.7850 10.1615 49 1 7.2840 -5.6367 10.3315 50 1 5.5912 -6.0929 10.6393 51 1 7.0545 -6.5560 12.8544 52 1 7.9505 -7.9155 15.7681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176669441.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:16 Heat of formation + Delta-G solvation = -145.508574 kcal Electronic energy + Delta-G solvation = -27827.929403 eV Core-core repulsion = 23633.231508 eV Total energy + Delta-G solvation = -4194.697895 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.30296 -39.69825 -38.31294 -36.58899 -34.88789 -34.31950 -33.83627 -32.69914 -31.72294 -31.20899 -30.78986 -27.63335 -26.57866 -24.82667 -23.66067 -22.83288 -21.77708 -21.70744 -21.26677 -20.39284 -19.20852 -17.88282 -17.33306 -16.97056 -16.61517 -16.43067 -16.14512 -15.78736 -15.50872 -15.38230 -14.77571 -14.48454 -14.39500 -14.27068 -13.93535 -13.72044 -13.57037 -13.46617 -13.32746 -12.98887 -12.74481 -12.66067 -12.15368 -12.07203 -12.04859 -11.84597 -11.78279 -11.55502 -11.47079 -11.41685 -11.32015 -11.23037 -11.10140 -11.07672 -10.93183 -10.38913 -10.21506 -10.19001 -10.05540 -9.50564 -9.30630 -8.46736 -8.06806 -7.95481 -6.41206 -3.82153 2.42145 2.90373 3.18284 3.26943 3.32779 3.32999 3.91348 4.06556 4.10104 4.13529 4.31457 4.39623 4.41336 4.44696 4.64982 4.75429 4.82921 4.86713 4.90263 4.96720 5.03522 5.06650 5.09504 5.16221 5.19251 5.26638 5.31169 5.32537 5.36164 5.44394 5.51781 5.52994 5.56897 5.64302 5.64900 5.68749 5.80172 5.84322 5.97796 6.00027 6.04769 6.20858 6.27501 6.45378 7.19917 7.23933 7.55660 7.65065 7.98616 8.06812 8.61794 9.18294 9.54839 10.06243 10.76557 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.001114 C = 0.001095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.068285 B =25120.443605 C =25568.320484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.074 3.926 7 H 0.070 0.930 8 C -0.096 4.096 9 C -0.139 4.139 10 C 0.511 3.489 11 O -0.544 6.544 12 N -0.731 5.731 13 C 0.120 3.880 14 C -0.129 4.129 15 C 0.062 3.938 16 N -0.670 5.670 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 O -0.368 6.368 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.402 0.598 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.029 0.971 48 H 0.349 0.651 49 H 0.086 0.914 50 H 0.044 0.956 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.394 11.622 -33.254 36.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.016 3.984 7 H 0.087 0.913 8 C -0.134 4.134 9 C -0.179 4.179 10 C 0.298 3.702 11 O -0.421 6.421 12 N -0.383 5.383 13 C -0.004 4.004 14 C -0.167 4.167 15 C -0.068 4.068 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 O -0.287 6.287 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.236 0.764 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.168 0.832 49 H 0.105 0.895 50 H 0.062 0.938 51 H 0.226 0.774 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.832 11.646 -33.180 36.513 hybrid contribution -0.472 -0.467 0.898 1.116 sum -10.304 11.180 -32.282 35.683 Atomic orbital electron populations 1.21807 0.93191 1.02978 1.02483 1.22963 0.95365 0.95347 0.85167 0.91465 1.23041 0.97804 0.99818 0.98313 1.23010 0.98429 1.01864 0.95650 1.23036 0.84771 0.96958 0.93618 0.91250 1.21403 1.02763 0.96839 0.92412 1.21649 1.03690 0.96982 0.95582 1.20752 0.76986 0.90168 0.82313 1.90706 1.51215 1.27411 1.72776 1.46061 1.69255 1.14628 1.08350 1.21322 1.00295 0.89011 0.89800 1.21744 1.02600 0.99677 0.92693 1.21830 1.00579 0.95289 0.89086 1.60048 1.38002 1.31771 1.00385 1.21673 1.00995 0.92388 0.93164 1.19816 0.84516 0.86972 0.86108 1.90518 1.55100 1.18346 1.82875 1.41863 1.58723 1.12118 1.07299 1.19711 1.42332 0.98065 0.82865 0.87917 1.25258 0.97098 0.95110 1.00426 1.69616 1.45902 1.04220 1.34585 0.85857 0.77914 0.78882 0.81637 1.20427 1.20908 1.19387 1.89162 1.26953 1.74450 1.38160 0.91768 0.91226 0.91758 0.90520 0.90659 0.90454 0.90293 0.89787 0.90218 0.88184 0.88932 0.76374 0.91285 0.91524 0.91267 0.90137 0.90788 0.95259 0.83191 0.89546 0.93811 0.77438 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.52 37.16 0.35 -0.36 16 2 C 0.07 0.39 3.92 -25.96 -0.10 0.29 16 3 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.15 -0.70 6.64 -25.07 -0.17 -0.87 16 5 C -0.15 -0.78 6.65 -25.07 -0.17 -0.94 16 6 C 0.07 0.46 3.25 -25.96 -0.08 0.37 16 7 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 8 C -0.10 -0.70 4.13 -26.74 -0.11 -0.81 16 9 C -0.14 -0.94 5.63 -27.89 -0.16 -1.10 16 10 C 0.51 5.04 7.83 -10.98 -0.09 4.96 16 11 O -0.54 -7.54 15.98 5.56 0.09 -7.45 16 12 N -0.73 -6.10 5.56 -60.29 -0.33 -6.43 16 13 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16 14 C -0.13 -1.23 5.59 -26.73 -0.15 -1.38 16 15 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 16 N -0.67 -10.68 6.12 -115.05 -0.70 -11.39 16 17 C 0.05 0.90 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.48 7.82 -10.98 -0.09 10.40 16 19 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 20 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 21 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 25 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 O -0.37 -2.90 10.75 -35.23 -0.38 -3.28 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.23 8.14 -51.92 -0.42 -0.20 16 32 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.08 0.35 7.86 -51.93 -0.41 -0.06 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.43 7.87 -51.93 -0.41 0.03 16 37 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.10 0.65 7.96 -51.93 -0.41 0.23 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.40 2.35 8.47 -40.82 -0.35 2.01 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.35 5.69 8.43 -39.29 -0.33 5.36 16 49 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 50 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 52 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 427.50 15.07 6.44 6.44 Total: -1.00 -34.35 427.50 -9.57 -43.92 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -9.34 Total: 11.16 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -1.07 Total: 5.18 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.37 Total: -56.19 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.20 Total: -26.60 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -34.35 -9.57 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176669441.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.591 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds