Wall clock time and date at job start Wed Apr 1 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.41657 * 2 1 4 4 C 1.54476 * 110.37236 * 237.68993 * 2 1 3 5 5 C 1.54686 * 104.07718 * 217.09958 * 4 2 1 6 6 C 1.54473 * 103.98180 * 0.13463 * 5 4 2 7 7 H 1.09000 * 110.36971 * 264.96767 * 6 5 4 8 8 C 1.52991 * 110.37588 * 142.73929 * 6 5 4 9 9 C 1.52994 * 109.47475 * 176.55088 * 8 6 5 10 10 C 1.50700 * 109.47431 * 179.97438 * 9 8 6 11 11 O 1.21275 * 119.99913 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00148 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99793 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47033 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47182 * 179.97438 * 14 13 12 16 16 N 1.46906 * 109.46978 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99793 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46921 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00180 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00273 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47268 * 89.99721 * 25 23 21 27 27 H 1.48498 * 109.47211 * 209.99980 * 25 23 21 28 28 H 1.48505 * 109.46734 * 329.99774 * 25 23 21 29 29 O 1.44425 * 110.37122 * 122.30760 * 2 1 3 30 30 H 1.08996 * 109.47120 * 299.14927 * 1 2 3 31 31 H 1.09008 * 109.47025 * 59.14495 * 1 2 3 32 32 H 1.08994 * 109.47335 * 179.14484 * 1 2 3 33 33 H 1.09006 * 110.51070 * 335.83097 * 4 2 1 34 34 H 1.08999 * 110.51649 * 98.54398 * 4 2 1 35 35 H 1.09004 * 110.61278 * 241.48357 * 5 4 2 36 36 H 1.09004 * 110.48833 * 118.72520 * 5 4 2 37 37 H 1.09005 * 109.47188 * 56.54658 * 8 6 5 38 38 H 1.09002 * 109.47330 * 296.54949 * 8 6 5 39 39 H 1.09005 * 109.47264 * 59.99617 * 9 8 6 40 40 H 1.09002 * 109.47187 * 299.99958 * 9 8 6 41 41 H 0.97005 * 119.99795 * 0.02562 * 12 10 9 42 42 H 1.08995 * 109.47572 * 60.00868 * 13 12 10 43 43 H 1.09006 * 109.47277 * 299.99710 * 13 12 10 44 44 H 1.09005 * 109.46845 * 60.00226 * 14 13 12 45 45 H 1.09002 * 109.46933 * 300.00326 * 14 13 12 46 46 H 1.08995 * 109.46859 * 60.00453 * 15 14 13 47 47 H 1.09002 * 109.47639 * 300.00121 * 15 14 13 48 48 H 1.00899 * 110.99995 * 56.04730 * 16 15 14 49 49 H 1.09002 * 109.47401 * 59.99808 * 17 16 15 50 50 H 1.09001 * 109.46874 * 299.99821 * 17 16 15 51 51 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 52 52 H 0.97000 * 119.99884 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3206 -1.5048 -0.6862 6 6 3.3873 -1.0871 0.7995 7 1 4.0528 -0.2329 0.9239 8 6 3.8601 -2.2592 1.6617 9 6 4.0011 -1.7998 3.1141 10 6 4.4662 -2.9545 3.9635 11 8 4.6657 -4.0382 3.4568 12 7 4.6615 -2.7827 5.2859 13 6 5.1141 -3.9051 6.1114 14 6 5.2550 -3.4457 7.5640 15 6 5.7271 -4.6180 8.4262 16 7 5.8619 -4.1770 9.8210 17 6 6.3151 -5.2790 10.6801 18 6 6.4420 -4.7896 12.0998 19 8 6.1801 -3.6364 12.3695 20 7 6.8455 -5.6337 13.0700 21 6 6.9604 -5.1886 14.3617 22 1 6.7280 -4.1615 14.6016 23 6 7.3769 -6.0585 15.3618 24 7 7.6601 -7.3081 15.0698 25 14 7.5328 -5.4524 17.1218 26 1 6.2427 -5.6511 17.8299 27 1 8.6010 -6.2158 17.8155 28 1 7.8786 -4.0082 17.1191 29 8 2.0327 -0.7236 1.1443 30 1 -0.3633 0.5005 0.8975 31 1 -0.3633 0.5271 -0.8823 32 1 -0.3634 -1.0275 -0.0153 33 1 1.3275 -1.4920 -1.5772 34 1 2.3429 -0.0840 -2.0216 35 1 4.2142 -1.1751 -1.2162 36 1 3.1997 -2.5845 -0.7744 37 1 4.8246 -2.6127 1.2970 38 1 3.1319 -3.0684 1.6057 39 1 3.0366 -1.4463 3.4788 40 1 4.7294 -0.9906 3.1702 41 1 4.5022 -1.9158 5.6911 42 1 6.0785 -4.2587 5.7467 43 1 4.3856 -4.7141 6.0557 44 1 4.2904 -3.0924 7.9285 45 1 5.9832 -2.6365 7.6201 46 1 6.6916 -4.9717 8.0619 47 1 4.9987 -5.4269 8.3701 48 1 4.9967 -3.7850 10.1615 49 1 7.2840 -5.6367 10.3315 50 1 5.5912 -6.0929 10.6393 51 1 7.0545 -6.5560 12.8544 52 1 7.9505 -7.9155 15.7681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176669441.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:15 Heat of formation + Delta-G solvation = -171.593494 kcal Electronic energy + Delta-G solvation = -27829.060530 eV Core-core repulsion = 23633.231508 eV Total energy + Delta-G solvation = -4195.829022 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.93704 -40.32116 -40.14797 -37.67152 -36.12674 -35.63310 -34.89419 -33.29645 -33.13995 -32.53112 -31.42440 -28.76304 -27.51706 -26.30224 -24.68852 -23.61376 -22.58157 -22.24858 -21.71005 -21.22536 -20.97285 -19.90268 -18.05353 -17.83814 -17.47081 -17.27296 -17.06608 -16.86638 -16.59623 -16.36980 -15.97034 -15.84923 -15.68631 -15.15725 -15.07119 -14.68168 -14.51314 -14.44601 -14.11390 -13.95225 -13.56429 -13.41415 -13.30715 -13.17771 -13.06456 -12.85272 -12.69448 -12.62096 -12.51530 -12.42531 -12.41377 -12.11555 -12.06209 -11.84958 -11.80752 -11.65233 -11.50664 -11.49567 -10.88287 -10.65161 -10.35653 -10.09142 -10.01930 -9.34171 -8.46818 -5.95894 1.38377 1.42291 1.55203 1.65343 2.04658 2.17693 2.30379 2.89890 2.94964 3.20550 3.52243 3.62091 3.71059 3.85559 3.97095 4.00362 4.04399 4.14231 4.15684 4.18776 4.32690 4.34225 4.44528 4.48398 4.50218 4.56211 4.57444 4.59858 4.67378 4.70501 4.73706 4.79229 4.84056 4.95717 4.97424 5.10830 5.16031 5.17296 5.20274 5.21472 5.26523 5.31491 5.40801 5.47073 5.88054 6.02317 6.09326 6.40419 6.56423 6.59706 7.12165 7.26418 7.55727 8.10769 8.70615 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.001114 C = 0.001095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.068285 B =25120.443605 C =25568.320484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 H 0.077 0.923 4 C -0.149 4.149 5 C -0.153 4.153 6 C 0.074 3.926 7 H 0.085 0.915 8 C -0.094 4.094 9 C -0.130 4.130 10 C 0.507 3.493 11 O -0.589 6.589 12 N -0.721 5.721 13 C 0.126 3.874 14 C -0.115 4.115 15 C 0.062 3.938 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.272 1.272 29 O -0.392 6.392 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.416 0.584 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.040 0.960 48 H 0.345 0.655 49 H 0.104 0.896 50 H 0.067 0.933 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 12.494 -34.032 37.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.095 0.905 4 C -0.187 4.187 5 C -0.191 4.191 6 C 0.017 3.983 7 H 0.103 0.897 8 C -0.132 4.132 9 C -0.170 4.170 10 C 0.296 3.704 11 O -0.470 6.470 12 N -0.374 5.374 13 C 0.001 3.999 14 C -0.153 4.153 15 C -0.067 4.067 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.211 4.211 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 O -0.312 6.312 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.253 0.747 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.058 0.942 48 H 0.164 0.836 49 H 0.122 0.878 50 H 0.084 0.916 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.814 12.523 -33.969 37.510 hybrid contribution -0.498 -0.731 1.092 1.406 sum -10.313 11.792 -32.876 36.418 Atomic orbital electron populations 1.21823 0.92909 1.02563 1.03084 1.23147 0.95728 0.95741 0.84919 0.90491 1.23044 0.97397 0.99928 0.98345 1.23036 0.99406 1.01416 0.95261 1.23083 0.84481 0.96871 0.93855 0.89723 1.21343 1.01924 0.96729 0.93159 1.21648 1.04555 0.96263 0.94513 1.21304 0.76144 0.90286 0.82712 1.90687 1.53340 1.29313 1.73643 1.45993 1.68367 1.15045 1.07967 1.21170 0.99719 0.89197 0.89789 1.21585 1.02866 0.98703 0.92136 1.21911 1.01354 0.96470 0.86943 1.60051 1.38083 1.31527 1.01887 1.21539 1.02741 0.93255 0.89312 1.20890 0.82387 0.86201 0.88105 1.90484 1.56307 1.20116 1.84084 1.41936 1.59401 1.12540 1.07113 1.19691 1.44561 0.97599 0.84707 0.90262 1.26040 0.96025 0.95137 1.03947 1.69676 1.45657 1.04863 1.35967 0.84927 0.78388 0.78185 0.76837 1.19578 1.19536 1.19720 1.89134 1.27764 1.74910 1.39388 0.92284 0.89476 0.92700 0.90809 0.88994 0.88971 0.91272 0.90068 0.92624 0.87544 0.86301 0.74713 0.92019 0.92331 0.90515 0.90170 0.90302 0.94185 0.83607 0.87829 0.91559 0.76967 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.52 71.98 0.69 -0.61 16 2 C 0.06 0.63 3.92 31.10 0.12 0.75 16 3 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 4 C -0.15 -1.19 6.64 31.67 0.21 -0.98 16 5 C -0.15 -1.42 6.65 31.67 0.21 -1.21 16 6 C 0.07 0.84 3.25 31.09 0.10 0.94 16 7 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 8 C -0.09 -1.33 4.13 30.59 0.13 -1.21 16 9 C -0.13 -1.61 5.63 29.85 0.17 -1.44 16 10 C 0.51 9.69 7.83 87.66 0.69 10.37 16 11 O -0.59 -16.55 15.98 -3.01 -0.05 -16.59 16 12 N -0.72 -11.09 5.56 -463.06 -2.57 -13.66 16 13 C 0.13 2.24 5.67 86.38 0.49 2.73 16 14 C -0.11 -1.99 5.59 30.60 0.17 -1.82 16 15 C 0.06 1.36 5.69 86.30 0.49 1.85 16 16 N -0.68 -20.87 6.12 -517.92 -3.17 -24.04 16 17 C 0.06 2.18 6.17 85.56 0.53 2.71 16 18 C 0.44 20.86 7.82 87.66 0.69 21.54 16 19 O -0.62 -34.60 15.78 -3.07 -0.05 -34.65 16 20 N -0.57 -29.56 5.29 -306.98 -1.62 -31.18 16 21 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 24 N -0.92 -49.86 13.05 21.66 0.28 -49.57 16 25 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 29 O -0.39 -5.88 10.75 -148.98 -1.60 -7.48 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 33 H 0.07 0.62 7.86 -2.38 -0.02 0.60 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.07 0.76 7.87 -2.38 -0.02 0.74 16 37 H 0.08 1.18 8.10 -2.38 -0.02 1.16 16 38 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 39 H 0.11 1.23 7.96 -2.38 -0.02 1.21 16 40 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.42 4.05 8.47 -92.70 -0.79 3.26 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.35 10.94 8.43 -89.69 -0.76 10.18 16 49 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 50 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 52 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -74.94 427.50 -2.15 -77.09 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: -1.35 Total: 40.05 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 5.96 Total: 15.09 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -7.08 Total: -118.46 kcal Atomic # 8 Polarization: -57.03 SS G_CDS: -1.70 Total: -58.73 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -74.94 -2.15 -77.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176669441.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.504 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds