Wall clock time and date at job start Wed Apr 1 2020 00:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.89940 * 2 1 4 4 C 1.54386 * 109.83352 * 239.06330 * 2 1 3 5 5 C 1.55303 * 102.25192 * 219.13053 * 4 2 1 6 6 C 1.54946 * 100.94508 * 34.13585 * 5 4 2 7 7 H 1.08995 * 110.31048 * 82.56317 * 6 5 4 8 8 C 1.52997 * 110.31172 * 204.63806 * 6 5 4 9 9 C 1.52997 * 109.47232 * 184.99603 * 8 6 5 10 10 C 1.50703 * 109.47084 * 179.97438 * 9 8 6 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99944 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 16 16 N 1.46897 * 109.47161 * 180.02562 * 15 14 13 17 17 C 1.46903 * 111.00195 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47365 * 179.97438 * 17 16 15 19 19 O 1.21303 * 119.99942 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00172 * 179.97438 * 18 17 16 21 21 C 1.37104 * 120.00010 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99731 * 0.02562 * 21 20 18 23 23 C 1.38945 * 119.99713 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00428 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99709 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47466 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47298 * 119.99647 * 25 23 21 28 28 H 1.48500 * 109.46924 * 239.99739 * 25 23 21 29 29 O 1.43247 * 109.82953 * 120.93199 * 2 1 3 30 30 H 1.08996 * 109.47622 * 180.93571 * 1 2 3 31 31 H 1.09000 * 109.47750 * 300.93694 * 1 2 3 32 32 H 1.09005 * 109.46975 * 60.93608 * 1 2 3 33 33 H 1.09000 * 110.84753 * 100.94050 * 4 2 1 34 34 H 1.08995 * 111.01927 * 337.40131 * 4 2 1 35 35 H 1.09000 * 111.13018 * 276.21295 * 5 4 2 36 36 H 1.09005 * 111.16015 * 152.06712 * 5 4 2 37 37 H 1.09002 * 109.47153 * 64.99611 * 8 6 5 38 38 H 1.09001 * 109.46832 * 304.99802 * 8 6 5 39 39 H 1.09002 * 109.47045 * 59.99942 * 9 8 6 40 40 H 1.09001 * 109.47375 * 299.99867 * 9 8 6 41 41 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 42 42 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 43 43 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 44 44 H 1.09001 * 109.47194 * 299.99493 * 14 13 12 45 45 H 1.08992 * 109.47399 * 59.99666 * 14 13 12 46 46 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 47 47 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 48 48 H 1.00899 * 111.00543 * 56.03720 * 16 15 14 49 49 H 1.08995 * 109.46655 * 299.99381 * 17 16 15 50 50 H 1.08993 * 109.47346 * 59.99566 * 17 16 15 51 51 H 0.96992 * 119.99793 * 0.02562 * 20 18 17 52 52 H 0.96999 * 120.00502 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0537 -0.7466 -1.2457 5 6 3.2730 -1.5222 -0.6766 6 6 2.7746 -1.8445 0.7547 7 1 2.1414 -2.7315 0.7440 8 6 3.9624 -2.0522 1.6964 9 6 3.4530 -2.4905 3.0709 10 6 4.6230 -2.6958 3.9983 11 8 5.7530 -2.5093 3.5993 12 7 4.4136 -3.0865 5.2710 13 6 5.5510 -3.2855 6.1727 14 6 5.0416 -3.7252 7.5468 15 6 6.2294 -3.9324 8.4886 16 7 5.7404 -4.3551 9.8078 17 6 6.8559 -4.5647 10.7404 18 6 6.3166 -4.9959 12.0799 19 8 5.1205 -5.1164 12.2419 20 7 7.1632 -5.2477 13.0979 21 6 6.6724 -5.6395 14.3166 22 1 5.6074 -5.7468 14.4608 23 6 7.5452 -5.8986 15.3662 24 7 8.8410 -5.7686 15.1907 25 14 6.8767 -6.4331 17.0266 26 1 5.3947 -6.5040 16.9640 27 1 7.4224 -7.7701 17.3728 28 1 7.2814 -5.4496 18.0630 29 8 2.0158 -0.6927 1.1559 30 1 -0.3634 -1.0275 0.0168 31 1 -0.3634 0.5283 0.8814 32 1 -0.3633 0.4993 -0.8983 33 1 2.3672 -0.0426 -2.0166 34 1 1.3028 -1.4349 -1.6335 35 1 4.1620 -0.8921 -0.6504 36 1 3.4579 -2.4350 -1.2430 37 1 4.5157 -1.1182 1.7949 38 1 4.6183 -2.8219 1.2896 39 1 2.8997 -3.4245 2.9724 40 1 2.7971 -1.7209 3.4777 41 1 3.5098 -3.2353 5.5902 42 1 6.1041 -2.3514 6.2716 43 1 6.2071 -4.0549 5.7656 44 1 4.3853 -2.9562 7.9541 45 1 4.4889 -4.6593 7.4475 46 1 6.8861 -4.7012 8.0816 47 1 6.7818 -2.9980 8.5878 48 1 5.1708 -5.1847 9.7335 49 1 7.5167 -5.3378 10.3485 50 1 7.4127 -3.6348 10.8556 51 1 8.1195 -5.1510 12.9684 52 1 9.4504 -5.9498 15.9233 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176669470.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:19 Heat of formation + Delta-G solvation = -171.993963 kcal Electronic energy + Delta-G solvation = -27836.847621 eV Core-core repulsion = 23641.001234 eV Total energy + Delta-G solvation = -4195.846388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.94811 -40.35963 -40.14982 -37.67172 -36.12668 -35.63249 -34.89289 -33.29780 -33.17768 -32.52423 -31.37879 -28.75836 -27.52088 -26.31388 -24.72101 -23.62136 -22.57907 -22.43081 -21.53129 -21.14296 -20.92554 -19.90378 -18.08735 -17.95355 -17.82520 -17.27012 -16.92780 -16.80849 -16.60356 -16.44261 -15.94964 -15.76023 -15.27740 -15.14479 -15.09242 -14.64522 -14.53204 -14.49504 -14.19648 -14.03127 -13.57552 -13.43150 -13.29076 -13.16769 -13.04554 -12.85643 -12.71889 -12.64075 -12.59790 -12.42615 -12.40042 -12.10739 -12.03071 -11.84924 -11.79008 -11.69005 -11.59374 -11.51472 -10.87320 -10.42838 -10.35662 -10.08893 -10.01934 -9.33922 -8.47023 -5.96004 1.36905 1.42346 1.56637 1.65701 2.04506 2.18166 2.30346 2.84185 2.95018 3.20423 3.52302 3.58511 3.71443 3.84228 3.90703 4.00490 4.12632 4.14631 4.16130 4.20976 4.32733 4.35321 4.42141 4.47993 4.51063 4.56539 4.57118 4.59368 4.70235 4.74015 4.77263 4.79951 4.82539 4.92747 4.98537 5.06991 5.13051 5.16527 5.21123 5.25836 5.32183 5.37497 5.41007 5.47409 5.88143 6.09444 6.19452 6.40917 6.56744 6.59614 7.12229 7.26732 7.55705 8.10748 8.70656 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.039082 B = 0.001115 C = 0.001092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.269022 B =25111.655669 C =25636.193695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.147 4.147 5 C -0.153 4.153 6 C 0.079 3.921 7 H 0.084 0.916 8 C -0.098 4.098 9 C -0.130 4.130 10 C 0.507 3.493 11 O -0.589 6.589 12 N -0.722 5.722 13 C 0.126 3.874 14 C -0.115 4.115 15 C 0.063 3.937 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 O -0.397 6.397 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.416 0.584 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.041 0.959 47 H 0.077 0.923 48 H 0.346 0.654 49 H 0.067 0.933 50 H 0.103 0.897 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.945 8.101 -34.980 37.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 H 0.092 0.908 4 C -0.184 4.184 5 C -0.191 4.191 6 C 0.022 3.978 7 H 0.101 0.899 8 C -0.136 4.136 9 C -0.170 4.170 10 C 0.295 3.705 11 O -0.470 6.470 12 N -0.374 5.374 13 C 0.001 3.999 14 C -0.153 4.153 15 C -0.067 4.067 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.196 1.196 29 O -0.317 6.317 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.253 0.747 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.164 0.836 49 H 0.085 0.915 50 H 0.121 0.879 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.933 8.826 -34.585 37.635 hybrid contribution 0.542 -1.024 0.734 1.372 sum -11.391 7.802 -33.850 36.558 Atomic orbital electron populations 1.22118 0.94229 1.02626 1.02666 1.22861 0.94888 0.96287 0.85108 0.90764 1.23182 0.97717 0.99951 0.97565 1.23318 0.98585 1.01928 0.95254 1.23074 0.91847 0.89361 0.93486 0.89851 1.21428 0.96529 1.02054 0.93589 1.21648 0.95695 1.05284 0.94324 1.21317 0.91150 0.75156 0.82830 1.90686 1.26597 1.52872 1.76827 1.45997 1.11139 1.69085 1.11170 1.21169 0.88843 1.00912 0.88947 1.21583 0.98229 1.03068 0.92416 1.21909 0.96665 1.00882 0.87213 1.60052 1.20694 1.41425 1.09415 1.21536 0.93434 1.02111 0.89764 1.20892 0.86732 0.82676 0.87273 1.90488 1.17238 1.58660 1.84616 1.41940 1.09147 1.59979 1.09940 1.19725 0.93979 1.44225 0.88525 0.90279 1.26037 0.95221 0.96921 1.02983 1.69675 1.02421 1.49260 1.34817 0.84870 0.78226 0.78205 0.77033 1.19713 1.19542 1.19640 1.88423 1.70891 1.40990 1.31441 0.92198 0.92765 0.90142 0.89053 0.89412 0.90848 0.88439 0.92638 0.90141 0.86375 0.87605 0.74728 0.92325 0.92021 0.90384 0.90316 0.94050 0.90428 0.83577 0.91494 0.87884 0.76967 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.44 71.98 0.68 -0.67 16 2 C 0.07 0.70 4.16 31.06 0.13 0.83 16 3 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.15 -1.01 6.54 31.86 0.21 -0.80 16 5 C -0.15 -1.30 6.57 32.05 0.21 -1.09 16 6 C 0.08 0.89 3.40 31.26 0.11 1.00 16 7 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 8 C -0.10 -1.38 4.23 30.59 0.13 -1.25 16 9 C -0.13 -1.62 5.63 29.85 0.17 -1.45 16 10 C 0.51 9.70 7.83 87.66 0.69 10.39 16 11 O -0.59 -16.53 15.98 -3.02 -0.05 -16.58 16 12 N -0.72 -11.14 5.56 -463.05 -2.57 -13.72 16 13 C 0.13 2.24 5.67 86.38 0.49 2.73 16 14 C -0.11 -2.00 5.59 30.59 0.17 -1.83 16 15 C 0.06 1.37 5.69 86.30 0.49 1.86 16 16 N -0.68 -20.89 6.13 -517.94 -3.17 -24.06 16 17 C 0.06 2.18 6.17 85.56 0.53 2.71 16 18 C 0.44 20.87 7.82 87.66 0.69 21.55 16 19 O -0.62 -34.64 15.78 -3.10 -0.05 -34.69 16 20 N -0.57 -29.56 5.29 -306.98 -1.62 -31.19 16 21 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 25 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 29 O -0.40 -5.99 10.47 -148.98 -1.56 -7.55 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 0.44 7.86 -2.39 -0.02 0.42 16 35 H 0.07 0.74 8.06 -2.39 -0.02 0.72 16 36 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 38 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 39 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 1.25 7.99 -2.39 -0.02 1.23 16 41 H 0.42 4.10 8.47 -92.71 -0.79 3.31 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.35 10.90 8.43 -89.70 -0.76 10.15 16 49 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 51 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 52 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -74.94 427.69 -2.10 -77.04 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -1.35 Total: 39.84 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 5.96 Total: 15.48 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -7.09 Total: -118.53 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -1.66 Total: -58.82 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -74.94 -2.10 -77.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176669470.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.952 kcal (2) G-P(sol) polarization free energy of solvation -74.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds