Wall clock time and date at job start Wed Apr 1 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.27274 * 2 1 4 4 C 1.54947 * 110.30874 * 122.19316 * 2 1 3 5 5 C 1.55307 * 100.94272 * 155.36267 * 4 2 1 6 6 C 1.54390 * 102.25162 * 325.86753 * 5 4 2 7 7 H 1.09000 * 109.82918 * 261.84296 * 6 5 4 8 8 C 1.52994 * 109.83034 * 140.86954 * 6 5 4 9 9 C 1.52996 * 109.47056 * 175.41436 * 8 6 5 10 10 C 1.50704 * 109.47185 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99881 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99679 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46822 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47216 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.47065 * 180.02562 * 15 14 13 17 17 C 1.46898 * 110.99923 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47351 * 180.02562 * 17 16 15 19 19 O 1.21298 * 119.99972 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00152 * 180.02562 * 18 17 16 21 21 C 1.37092 * 120.00089 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00358 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00346 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99574 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00283 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46825 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47317 * 119.99709 * 25 23 21 28 28 H 1.48499 * 109.46744 * 239.99896 * 25 23 21 29 29 O 1.43244 * 107.58641 * 21.35598 * 6 5 4 30 30 H 1.09002 * 109.47153 * 180.63696 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.63886 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.63868 * 1 2 3 33 33 H 1.09000 * 111.12910 * 273.27566 * 4 2 1 34 34 H 1.09002 * 111.12472 * 37.44413 * 4 2 1 35 35 H 1.09003 * 110.84897 * 207.68146 * 5 4 2 36 36 H 1.09002 * 111.02648 * 84.13662 * 5 4 2 37 37 H 1.08998 * 109.47286 * 295.41560 * 8 6 5 38 38 H 1.09003 * 109.47375 * 55.41067 * 8 6 5 39 39 H 1.09000 * 109.47358 * 299.99693 * 9 8 6 40 40 H 1.08998 * 109.47528 * 60.00307 * 9 8 6 41 41 H 0.96999 * 120.00112 * 0.02562 * 12 10 9 42 42 H 1.08998 * 109.47507 * 300.00472 * 13 12 10 43 43 H 1.09005 * 109.47041 * 60.00533 * 13 12 10 44 44 H 1.08998 * 109.47578 * 300.00568 * 14 13 12 45 45 H 1.09005 * 109.46764 * 60.00502 * 14 13 12 46 46 H 1.08998 * 109.47577 * 300.00894 * 15 14 13 47 47 H 1.09005 * 109.46579 * 60.00714 * 15 14 13 48 48 H 1.00900 * 110.99947 * 56.05496 * 16 15 14 49 49 H 1.09005 * 109.47373 * 300.00560 * 17 16 15 50 50 H 1.09001 * 109.47035 * 60.00181 * 17 16 15 51 51 H 0.97005 * 120.00123 * 0.02562 * 20 18 17 52 52 H 0.96998 * 120.00032 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7742 1.2297 5 6 3.4699 -1.2031 0.7180 6 6 3.2113 -1.4412 -0.7854 7 1 3.0625 -2.5049 -0.9711 8 6 4.3991 -0.9310 -1.6036 9 6 4.1863 -1.2732 -3.0795 10 6 5.3561 -0.7701 -3.8856 11 8 6.2702 -0.1949 -3.3337 12 7 5.3869 -0.9602 -5.2196 13 6 6.5238 -0.4706 -6.0031 14 6 6.3116 -0.8141 -7.4789 15 6 7.4986 -0.3022 -8.2974 16 7 7.2946 -0.6314 -9.7144 17 6 8.4176 -0.1546 -10.5326 18 6 8.1731 -0.5091 -11.9768 19 8 7.1625 -1.1004 -12.2934 20 7 9.0774 -0.1692 -12.9165 21 6 8.8547 -0.4912 -14.2303 22 1 7.9549 -1.0176 -14.5123 23 6 9.7873 -0.1412 -15.1992 24 7 10.8824 0.4989 -14.8561 25 14 9.4842 -0.5806 -16.9893 26 1 8.1880 -1.2950 -17.1110 27 1 9.4443 0.6604 -17.8038 28 1 10.5796 -1.4572 -17.4761 29 8 2.0286 -0.7157 -1.1413 30 1 -0.3633 -1.0276 0.0114 31 1 -0.3633 0.5039 -0.8957 32 1 -0.3634 0.5237 0.8842 33 1 2.1497 -0.1223 2.0994 34 1 1.4470 -1.6429 1.4493 35 1 3.7966 -2.1217 1.2055 36 1 4.2001 -0.4073 0.8646 37 1 4.4815 0.1499 -1.4894 38 1 5.3147 -1.4045 -1.2491 39 1 4.1041 -2.3541 -3.1937 40 1 3.2709 -0.7996 -3.4340 41 1 4.6560 -1.4206 -5.6609 42 1 6.6050 0.6104 -5.8892 43 1 7.4398 -0.9432 -5.6486 44 1 6.2307 -1.8951 -7.5925 45 1 5.3955 -0.3419 -7.8338 46 1 7.5792 0.7789 -8.1839 47 1 8.4150 -0.7741 -7.9427 48 1 6.4189 -0.2590 -10.0498 49 1 8.5052 0.9274 -10.4342 50 1 9.3401 -0.6261 -10.1936 51 1 9.8859 0.3034 -12.6633 52 1 11.5333 0.7436 -15.5324 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176669473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:23 Heat of formation + Delta-G solvation = -172.031477 kcal Electronic energy + Delta-G solvation = -27868.434375 eV Core-core repulsion = 23672.586361 eV Total energy + Delta-G solvation = -4195.848014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96997 -40.34955 -40.15113 -37.67328 -36.12789 -35.63403 -34.85345 -33.29887 -33.17569 -32.53621 -31.42776 -28.75704 -27.50090 -26.31005 -24.72394 -23.63846 -22.58368 -22.44985 -21.52947 -21.13238 -20.90900 -19.90498 -18.09624 -17.95093 -17.82785 -17.27885 -16.94755 -16.83270 -16.61880 -16.42011 -15.94069 -15.75467 -15.31931 -15.16284 -15.04618 -14.69183 -14.63390 -14.42626 -14.22009 -13.84874 -13.56809 -13.38367 -13.26735 -13.26264 -13.11009 -12.85854 -12.72947 -12.63964 -12.59074 -12.43051 -12.40087 -12.10826 -12.02562 -11.85340 -11.79908 -11.68900 -11.60723 -11.51606 -10.88458 -10.42411 -10.35817 -10.09545 -10.02053 -9.34413 -8.47166 -5.96067 1.36828 1.42260 1.56574 1.65092 2.04349 2.17788 2.30239 2.84991 2.94887 3.20287 3.52063 3.59930 3.68997 3.84538 3.90753 3.99903 4.12042 4.13594 4.16740 4.21577 4.31427 4.33882 4.40767 4.48062 4.50916 4.55961 4.58276 4.61549 4.69582 4.74564 4.76036 4.80828 4.83960 4.92463 4.97260 5.06026 5.14463 5.15597 5.20667 5.24994 5.31950 5.36687 5.40937 5.46829 5.87905 6.09213 6.18407 6.40145 6.56199 6.59476 7.12132 7.26124 7.55555 8.10602 8.70523 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038842 B = 0.001119 C = 0.001100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.688898 B =25006.771162 C =25440.649802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.065 3.935 3 H 0.063 0.937 4 C -0.147 4.147 5 C -0.153 4.153 6 C 0.079 3.921 7 H 0.092 0.908 8 C -0.108 4.108 9 C -0.129 4.129 10 C 0.507 3.493 11 O -0.590 6.590 12 N -0.722 5.722 13 C 0.126 3.874 14 C -0.115 4.115 15 C 0.063 3.937 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 O -0.394 6.394 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.416 0.584 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.040 0.960 47 H 0.078 0.922 48 H 0.345 0.655 49 H 0.067 0.933 50 H 0.104 0.896 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.355 -1.880 34.032 37.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 H 0.081 0.919 4 C -0.184 4.184 5 C -0.190 4.190 6 C 0.022 3.978 7 H 0.110 0.890 8 C -0.147 4.147 9 C -0.169 4.169 10 C 0.295 3.705 11 O -0.470 6.470 12 N -0.374 5.374 13 C 0.001 3.999 14 C -0.153 4.153 15 C -0.067 4.067 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.196 1.196 29 O -0.315 6.315 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.253 0.747 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.097 0.903 48 H 0.164 0.836 49 H 0.084 0.916 50 H 0.122 0.878 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.047 -2.427 33.941 37.622 hybrid contribution 0.308 1.028 -1.087 1.528 sum -15.740 -1.399 32.854 36.456 Atomic orbital electron populations 1.21880 0.92993 1.02886 1.02809 1.23112 0.95474 0.95471 0.85191 0.91905 1.23310 0.95802 1.01137 0.98157 1.23190 0.98026 1.03497 0.94304 1.22838 0.84423 0.96393 0.94136 0.88973 1.21673 0.97958 1.01452 0.93582 1.21628 0.96100 1.04198 0.94933 1.21343 0.88291 0.78263 0.82588 1.90684 1.40414 1.44296 1.71650 1.46000 1.24382 1.59691 1.07316 1.21169 0.89262 0.99124 0.90312 1.21584 0.98683 1.02934 0.92090 1.21909 0.99373 0.98781 0.86602 1.60050 1.04501 1.64793 1.02210 1.21538 0.96518 0.99458 0.89327 1.20889 0.84550 0.83580 0.88558 1.90487 1.30447 1.46846 1.83220 1.41939 1.20749 1.51740 1.06570 1.19723 1.06558 1.36394 0.83784 0.90282 1.26043 0.94651 0.96231 1.04245 1.69678 1.10152 1.39870 1.36468 0.84868 0.78323 0.78277 0.76856 1.19714 1.19560 1.19616 1.88415 1.42538 1.65118 1.35411 0.91940 0.92645 0.89785 0.88809 0.89606 0.88557 0.90681 0.92869 0.90592 0.86501 0.87584 0.74730 0.92315 0.92058 0.90190 0.90512 0.94171 0.90307 0.83606 0.91557 0.87819 0.76963 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.62 71.98 0.69 -0.59 16 2 C 0.06 0.71 4.07 31.26 0.13 0.84 16 3 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 4 C -0.15 -1.05 6.57 32.05 0.21 -0.84 16 5 C -0.15 -1.27 6.55 31.86 0.21 -1.06 16 6 C 0.08 0.89 3.52 31.06 0.11 1.00 16 7 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 8 C -0.11 -1.55 4.07 30.59 0.12 -1.42 16 9 C -0.13 -1.65 5.61 29.85 0.17 -1.48 16 10 C 0.51 9.83 7.83 87.66 0.69 10.52 16 11 O -0.59 -16.68 15.98 -3.04 -0.05 -16.73 16 12 N -0.72 -11.30 5.56 -463.04 -2.57 -13.88 16 13 C 0.13 2.26 5.67 86.38 0.49 2.75 16 14 C -0.11 -2.01 5.59 30.60 0.17 -1.84 16 15 C 0.06 1.37 5.69 86.30 0.49 1.86 16 16 N -0.68 -20.92 6.13 -517.93 -3.17 -24.10 16 17 C 0.06 2.19 6.17 85.56 0.53 2.71 16 18 C 0.44 20.88 7.82 87.66 0.69 21.57 16 19 O -0.62 -34.66 15.78 -3.08 -0.05 -34.71 16 20 N -0.57 -29.57 5.29 -306.98 -1.62 -31.20 16 21 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 25 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 O -0.39 -5.85 10.32 -148.98 -1.54 -7.39 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.09 0.51 8.06 -2.39 -0.02 0.49 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.07 0.70 7.85 -2.39 -0.02 0.68 16 37 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 39 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 1.27 7.88 -2.39 -0.02 1.25 16 41 H 0.42 4.20 8.47 -92.71 -0.79 3.41 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 48 H 0.35 10.97 8.43 -89.69 -0.76 10.21 16 49 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 50 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 51 H 0.40 19.42 7.90 -92.70 -0.73 18.69 16 52 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -74.81 427.45 -2.07 -76.89 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -1.35 Total: 40.17 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 5.97 Total: 15.51 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -7.09 Total: -118.74 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -1.63 Total: -58.83 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -74.81 -2.07 -76.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176669473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.145 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds