Wall clock time and date at job start Wed Apr 1 2020 00:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.86748 * 2 1 4 4 C 1.54093 * 109.87956 * 121.01247 * 2 1 3 5 5 C 1.54809 * 104.18968 * 121.45793 * 4 2 1 6 6 C 1.54995 * 102.09079 * 20.87593 * 5 4 2 7 7 H 1.08997 * 110.61504 * 81.64006 * 6 5 4 8 8 C 1.53001 * 110.61786 * 204.47532 * 6 5 4 9 9 C 1.52993 * 109.47351 * 185.00159 * 8 6 5 10 10 C 1.50700 * 109.47380 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00067 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00003 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00234 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47611 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47351 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.47119 * 179.97438 * 15 14 13 17 17 C 1.46897 * 111.00021 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47271 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99903 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00013 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99736 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00141 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00051 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00159 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99583 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47253 * 90.00024 * 25 23 21 27 27 H 1.48498 * 109.47031 * 209.99809 * 25 23 21 28 28 H 1.48502 * 109.47142 * 329.99663 * 25 23 21 29 29 O 1.43746 * 109.87802 * 239.00062 * 2 1 3 30 30 H 1.08998 * 109.47007 * 299.29396 * 1 2 3 31 31 H 1.08996 * 109.47351 * 59.29837 * 1 2 3 32 32 H 1.08999 * 109.46680 * 179.29535 * 1 2 3 33 33 H 1.09008 * 110.48617 * 240.13472 * 4 2 1 34 34 H 1.09005 * 110.49051 * 2.77579 * 4 2 1 35 35 H 1.08992 * 110.90949 * 139.07772 * 5 4 2 36 36 H 1.09005 * 110.90301 * 262.68341 * 5 4 2 37 37 H 1.08998 * 109.47670 * 305.00746 * 8 6 5 38 38 H 1.09004 * 109.47063 * 65.00335 * 8 6 5 39 39 H 1.09009 * 109.47345 * 300.00397 * 9 8 6 40 40 H 1.09004 * 109.46893 * 60.00072 * 9 8 6 41 41 H 0.97002 * 120.00355 * 0.02562 * 12 10 9 42 42 H 1.09009 * 109.46928 * 300.00529 * 13 12 10 43 43 H 1.09003 * 109.46767 * 59.99642 * 13 12 10 44 44 H 1.08998 * 109.47213 * 300.00669 * 14 13 12 45 45 H 1.09004 * 109.46893 * 59.99874 * 14 13 12 46 46 H 1.08992 * 109.47354 * 300.00274 * 15 14 13 47 47 H 1.08999 * 109.46745 * 60.00495 * 15 14 13 48 48 H 1.00899 * 111.00344 * 303.95948 * 16 15 14 49 49 H 1.09002 * 109.47620 * 300.00604 * 17 16 15 50 50 H 1.09008 * 109.46783 * 60.00301 * 17 16 15 51 51 H 0.96999 * 119.99781 * 359.97438 * 20 18 17 52 52 H 0.97000 * 119.99618 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0540 -0.7466 1.2420 5 6 2.9197 -1.8905 0.6599 6 6 3.2380 -1.3650 -0.7630 7 1 4.0703 -0.6618 -0.7352 8 6 3.5476 -2.5265 -1.7096 9 6 3.9785 -1.9749 -3.0700 10 6 4.2829 -3.1189 -4.0025 11 8 4.1662 -4.2629 -3.6171 12 7 4.6839 -2.8708 -5.2651 13 6 4.9803 -3.9829 -6.1714 14 6 5.4111 -3.4312 -7.5319 15 6 5.7214 -4.5927 -8.4782 16 7 6.1344 -4.0630 -9.7847 17 6 6.4416 -5.1523 -10.7211 18 6 6.8599 -4.5716 -12.0474 19 8 6.8988 -3.3686 -12.1975 20 7 7.1908 -5.3889 -13.0667 21 6 7.5719 -4.8606 -14.2730 22 1 7.6065 -3.7894 -14.4066 23 6 7.9135 -5.7032 -15.3237 24 7 8.2783 -5.1968 -16.4801 25 14 7.8530 -7.5559 -15.0927 26 1 6.5033 -8.0564 -15.4575 27 1 8.8706 -8.1969 -15.9637 28 1 8.1369 -7.8873 -13.6732 29 8 2.0188 -0.6962 -1.1587 30 1 -0.3633 0.5028 0.8962 31 1 -0.3634 0.5247 -0.8836 32 1 -0.3632 -1.0276 -0.0126 33 1 2.6620 -0.0834 1.8575 34 1 1.2247 -1.1526 1.8213 35 1 3.8332 -2.0207 1.2399 36 1 2.3541 -2.8212 0.6134 37 1 4.3521 -3.1315 -1.2915 38 1 2.6566 -3.1422 -1.8329 39 1 3.1739 -1.3699 -3.4882 40 1 4.8696 -1.3592 -2.9467 41 1 4.7769 -1.9558 -5.5735 42 1 5.7853 -4.5876 -5.7535 43 1 4.0895 -4.5988 -6.2942 44 1 4.6066 -2.8263 -7.9500 45 1 6.3021 -2.8155 -7.4086 46 1 6.5261 -5.1972 -8.0600 47 1 4.8306 -5.2087 -8.6016 48 1 5.4309 -3.4472 -10.1640 49 1 7.2518 -5.7601 -10.3184 50 1 5.5561 -5.7728 -10.8597 51 1 7.1601 -6.3509 -12.9465 52 1 8.5164 -5.7851 -17.2137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176669476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:27 Heat of formation + Delta-G solvation = -138.369563 kcal Electronic energy + Delta-G solvation = -27876.538374 eV Core-core repulsion = 23682.150050 eV Total energy + Delta-G solvation = -4194.388324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.32149 -39.73543 -38.50961 -36.67373 -34.95996 -34.34670 -33.89858 -32.76262 -31.81738 -31.58592 -30.83213 -27.72496 -26.66393 -24.82858 -23.65868 -22.84572 -21.77027 -21.57399 -21.44295 -20.41839 -19.36721 -18.33303 -17.41272 -17.07412 -16.53677 -16.45203 -16.20534 -15.79307 -15.63776 -15.37281 -14.97464 -14.70461 -14.31768 -14.19977 -13.99316 -13.72929 -13.58540 -13.46852 -13.14846 -13.06829 -12.83535 -12.72443 -12.37127 -12.18755 -12.14610 -12.12199 -11.90649 -11.72425 -11.58423 -11.52847 -11.33745 -11.20339 -11.19374 -11.15996 -11.01217 -10.59435 -10.12364 -10.08930 -9.97575 -9.57505 -9.34405 -8.60452 -8.20687 -8.15084 -6.31326 -3.82778 2.38839 2.86592 3.03065 3.06888 3.15289 3.28788 3.73869 4.01297 4.06932 4.10798 4.14049 4.37509 4.39041 4.41081 4.62895 4.73369 4.77695 4.78958 4.85693 4.88244 4.99761 5.00713 5.03423 5.11406 5.14741 5.21968 5.27100 5.29178 5.35286 5.37401 5.46309 5.50140 5.54583 5.57352 5.62811 5.66223 5.68441 5.80823 5.82260 5.90547 5.94725 6.00521 6.16895 6.49641 7.06556 7.20429 7.55008 7.58326 7.95211 8.14277 8.59653 8.94733 9.42289 9.82469 10.81822 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.037969 B = 0.001144 C = 0.001127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.260527 B =24461.090153 C =24837.522599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 H 0.067 0.933 4 C -0.153 4.153 5 C -0.151 4.151 6 C 0.075 3.925 7 H 0.071 0.929 8 C -0.096 4.096 9 C -0.139 4.139 10 C 0.511 3.489 11 O -0.544 6.544 12 N -0.731 5.731 13 C 0.120 3.880 14 C -0.129 4.129 15 C 0.063 3.937 16 N -0.670 5.670 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 O -0.370 6.370 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.402 0.598 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.030 0.970 48 H 0.351 0.649 49 H 0.088 0.912 50 H 0.045 0.955 51 H 0.371 0.629 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 6.264 36.606 39.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.014 3.986 3 H 0.084 0.916 4 C -0.191 4.191 5 C -0.188 4.188 6 C 0.018 3.982 7 H 0.089 0.911 8 C -0.134 4.134 9 C -0.179 4.179 10 C 0.298 3.702 11 O -0.421 6.421 12 N -0.383 5.383 13 C -0.004 4.004 14 C -0.168 4.168 15 C -0.068 4.068 16 N -0.302 5.302 17 C -0.085 4.085 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.435 4.435 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 O -0.290 6.290 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.237 0.763 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.048 0.952 48 H 0.170 0.830 49 H 0.106 0.894 50 H 0.063 0.937 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.186 6.298 36.511 39.003 hybrid contribution -0.661 -1.375 -0.246 1.546 sum -12.847 4.923 36.264 38.786 Atomic orbital electron populations 1.21938 0.93775 1.02847 1.02352 1.22699 0.95186 0.95688 0.85065 0.91556 1.23021 1.00301 0.97717 0.98068 1.23147 1.00573 0.99121 0.95982 1.23229 0.88020 0.93689 0.93301 0.91066 1.21369 1.03081 0.96158 0.92795 1.21659 1.03688 0.97116 0.95474 1.20750 0.76241 0.90886 0.82309 1.90707 1.52189 1.23148 1.76067 1.46057 1.69321 1.10462 1.12466 1.21315 1.01006 0.89121 0.88974 1.21743 1.02585 0.99040 0.93396 1.21830 0.99067 0.95781 0.90075 1.60027 1.49438 1.18483 1.02268 1.21707 1.00555 0.93450 0.92772 1.19714 0.84270 0.87528 0.84967 1.90562 1.56850 1.14507 1.82809 1.42207 1.61486 1.07279 1.12009 1.19441 1.41920 0.96307 0.85811 0.86275 1.25033 0.97342 0.98517 0.95192 1.69620 1.44565 1.35580 1.02367 0.86674 0.78901 0.85419 0.78419 1.19650 1.20144 1.19451 1.88954 1.39699 1.67455 1.32858 0.91388 0.91876 0.91892 0.90713 0.90315 0.90111 0.90208 0.89742 0.90177 0.88190 0.88896 0.76344 0.91309 0.91528 0.91189 0.90074 0.90762 0.95218 0.82994 0.89415 0.93696 0.79663 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.36 37.16 0.35 -0.40 16 2 C 0.07 0.40 4.05 -26.16 -0.11 0.30 16 3 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.15 -0.66 6.64 -25.21 -0.17 -0.83 16 5 C -0.15 -0.74 6.59 -24.72 -0.16 -0.90 16 6 C 0.07 0.45 3.29 -25.68 -0.08 0.36 16 7 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 8 C -0.10 -0.67 4.26 -26.73 -0.11 -0.78 16 9 C -0.14 -0.90 5.65 -27.89 -0.16 -1.06 16 10 C 0.51 4.86 7.83 -10.99 -0.09 4.77 16 11 O -0.54 -7.33 15.98 5.56 0.09 -7.24 16 12 N -0.73 -5.80 5.56 -60.29 -0.33 -6.14 16 13 C 0.12 1.07 5.67 -4.05 -0.02 1.05 16 14 C -0.13 -1.16 5.59 -26.73 -0.15 -1.31 16 15 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 16 N -0.67 -10.09 6.13 -115.06 -0.70 -10.79 16 17 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 18 C 0.45 10.22 7.82 -10.98 -0.09 10.14 16 19 O -0.57 -15.21 15.78 5.55 0.09 -15.12 16 20 N -0.59 -14.11 5.09 -10.96 -0.06 -14.17 16 21 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 22 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 23 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -25.80 13.96 55.50 0.77 -25.02 16 25 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 28 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 29 O -0.37 -2.88 10.76 -35.23 -0.38 -3.26 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 34 H 0.08 0.30 7.70 -51.93 -0.40 -0.10 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 37 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.10 0.61 8.06 -51.92 -0.42 0.19 16 40 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.40 2.21 8.47 -40.82 -0.35 1.86 16 42 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.35 5.42 8.43 -39.29 -0.33 5.09 16 49 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 51 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 52 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 424.63 15.07 6.40 6.40 Total: -1.00 -35.58 424.63 -9.24 -44.81 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -9.31 Total: 10.87 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -1.09 Total: 4.98 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.32 Total: -56.11 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.20 Total: -25.62 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -35.58 -9.24 -44.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176669476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.556 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds