Wall clock time and date at job start Wed Apr 1 2020 00:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.86748 * 2 1 4 4 C 1.54093 * 109.87956 * 121.01247 * 2 1 3 5 5 C 1.54809 * 104.18968 * 121.45793 * 4 2 1 6 6 C 1.54995 * 102.09079 * 20.87593 * 5 4 2 7 7 H 1.08997 * 110.61504 * 81.64006 * 6 5 4 8 8 C 1.53001 * 110.61786 * 204.47532 * 6 5 4 9 9 C 1.52993 * 109.47351 * 185.00159 * 8 6 5 10 10 C 1.50700 * 109.47380 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00067 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00003 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00234 * 179.97438 * 12 10 9 14 14 C 1.52993 * 109.47611 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47351 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.47119 * 179.97438 * 15 14 13 17 17 C 1.46897 * 111.00021 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47271 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99903 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00013 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99736 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00141 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00051 * 179.97438 * 21 20 18 24 24 N 1.31405 * 120.00159 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99583 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47253 * 90.00024 * 25 23 21 27 27 H 1.48498 * 109.47031 * 209.99809 * 25 23 21 28 28 H 1.48502 * 109.47142 * 329.99663 * 25 23 21 29 29 O 1.43746 * 109.87802 * 239.00062 * 2 1 3 30 30 H 1.08998 * 109.47007 * 299.29396 * 1 2 3 31 31 H 1.08996 * 109.47351 * 59.29837 * 1 2 3 32 32 H 1.08999 * 109.46680 * 179.29535 * 1 2 3 33 33 H 1.09008 * 110.48617 * 240.13472 * 4 2 1 34 34 H 1.09005 * 110.49051 * 2.77579 * 4 2 1 35 35 H 1.08992 * 110.90949 * 139.07772 * 5 4 2 36 36 H 1.09005 * 110.90301 * 262.68341 * 5 4 2 37 37 H 1.08998 * 109.47670 * 305.00746 * 8 6 5 38 38 H 1.09004 * 109.47063 * 65.00335 * 8 6 5 39 39 H 1.09009 * 109.47345 * 300.00397 * 9 8 6 40 40 H 1.09004 * 109.46893 * 60.00072 * 9 8 6 41 41 H 0.97002 * 120.00355 * 0.02562 * 12 10 9 42 42 H 1.09009 * 109.46928 * 300.00529 * 13 12 10 43 43 H 1.09003 * 109.46767 * 59.99642 * 13 12 10 44 44 H 1.08998 * 109.47213 * 300.00669 * 14 13 12 45 45 H 1.09004 * 109.46893 * 59.99874 * 14 13 12 46 46 H 1.08992 * 109.47354 * 300.00274 * 15 14 13 47 47 H 1.08999 * 109.46745 * 60.00495 * 15 14 13 48 48 H 1.00899 * 111.00344 * 303.95948 * 16 15 14 49 49 H 1.09002 * 109.47620 * 300.00604 * 17 16 15 50 50 H 1.09008 * 109.46783 * 60.00301 * 17 16 15 51 51 H 0.96999 * 119.99781 * 359.97438 * 20 18 17 52 52 H 0.97000 * 119.99618 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0540 -0.7466 1.2420 5 6 2.9197 -1.8905 0.6599 6 6 3.2380 -1.3650 -0.7630 7 1 4.0703 -0.6618 -0.7352 8 6 3.5476 -2.5265 -1.7096 9 6 3.9785 -1.9749 -3.0700 10 6 4.2829 -3.1189 -4.0025 11 8 4.1662 -4.2629 -3.6171 12 7 4.6839 -2.8708 -5.2651 13 6 4.9803 -3.9829 -6.1714 14 6 5.4111 -3.4312 -7.5319 15 6 5.7214 -4.5927 -8.4782 16 7 6.1344 -4.0630 -9.7847 17 6 6.4416 -5.1523 -10.7211 18 6 6.8599 -4.5716 -12.0474 19 8 6.8988 -3.3686 -12.1975 20 7 7.1908 -5.3889 -13.0667 21 6 7.5719 -4.8606 -14.2730 22 1 7.6065 -3.7894 -14.4066 23 6 7.9135 -5.7032 -15.3237 24 7 8.2783 -5.1968 -16.4801 25 14 7.8530 -7.5559 -15.0927 26 1 6.5033 -8.0564 -15.4575 27 1 8.8706 -8.1969 -15.9637 28 1 8.1369 -7.8873 -13.6732 29 8 2.0188 -0.6962 -1.1587 30 1 -0.3633 0.5028 0.8962 31 1 -0.3634 0.5247 -0.8836 32 1 -0.3632 -1.0276 -0.0126 33 1 2.6620 -0.0834 1.8575 34 1 1.2247 -1.1526 1.8213 35 1 3.8332 -2.0207 1.2399 36 1 2.3541 -2.8212 0.6134 37 1 4.3521 -3.1315 -1.2915 38 1 2.6566 -3.1422 -1.8329 39 1 3.1739 -1.3699 -3.4882 40 1 4.8696 -1.3592 -2.9467 41 1 4.7769 -1.9558 -5.5735 42 1 5.7853 -4.5876 -5.7535 43 1 4.0895 -4.5988 -6.2942 44 1 4.6066 -2.8263 -7.9500 45 1 6.3021 -2.8155 -7.4086 46 1 6.5261 -5.1972 -8.0600 47 1 4.8306 -5.2087 -8.6016 48 1 5.4309 -3.4472 -10.1640 49 1 7.2518 -5.7601 -10.3184 50 1 5.5561 -5.7728 -10.8597 51 1 7.1601 -6.3509 -12.9465 52 1 8.5164 -5.7851 -17.2137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176669476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:26 Heat of formation + Delta-G solvation = -166.856595 kcal Electronic energy + Delta-G solvation = -27877.773665 eV Core-core repulsion = 23682.150050 eV Total energy + Delta-G solvation = -4195.623615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92971 -40.35160 -40.27360 -37.68354 -36.15112 -35.66214 -34.90040 -33.75902 -33.18979 -32.56118 -31.40369 -28.86642 -27.51645 -26.18643 -24.63642 -23.66805 -22.57256 -22.06192 -21.84963 -21.31242 -21.08985 -20.23918 -18.06193 -17.83258 -17.57373 -17.28509 -17.00113 -16.86267 -16.74869 -16.43686 -15.91882 -15.76017 -15.61861 -15.18860 -14.92058 -14.66325 -14.52733 -14.45246 -14.22432 -14.08215 -13.92516 -13.52127 -13.36946 -13.21480 -13.11144 -12.88729 -12.71592 -12.62070 -12.54946 -12.41897 -12.41554 -12.07990 -11.97937 -11.83852 -11.79853 -11.64003 -11.51526 -11.50837 -10.87819 -10.57200 -10.44510 -10.25282 -10.08576 -9.33554 -8.41605 -6.02625 1.30822 1.35568 1.44807 1.65594 1.95186 2.18498 2.23068 2.75635 2.86831 3.15117 3.41459 3.60431 3.72532 3.83737 3.98469 4.00243 4.03561 4.12288 4.15578 4.18367 4.21387 4.36739 4.42957 4.44167 4.47917 4.55534 4.56818 4.59165 4.69069 4.71747 4.75325 4.79094 4.83722 4.94187 4.96988 5.10908 5.16976 5.18144 5.18619 5.22376 5.28862 5.31945 5.47718 5.52491 5.90166 6.04219 6.07474 6.38949 6.56467 6.59584 6.87640 7.26513 7.39432 7.95802 8.76074 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.037969 B = 0.001144 C = 0.001127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.260527 B =24461.090153 C =24837.522599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 H 0.073 0.927 4 C -0.149 4.149 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.086 0.914 8 C -0.093 4.093 9 C -0.131 4.131 10 C 0.508 3.492 11 O -0.589 6.589 12 N -0.722 5.722 13 C 0.126 3.874 14 C -0.117 4.117 15 C 0.064 3.936 16 N -0.688 5.688 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.331 4.331 22 H 0.056 0.944 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.257 1.257 27 H -0.275 1.275 28 H -0.231 1.231 29 O -0.394 6.394 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.416 0.584 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.043 0.957 48 H 0.345 0.655 49 H 0.113 0.887 50 H 0.078 0.922 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 4.634 39.084 41.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.006 3.994 3 H 0.091 0.909 4 C -0.187 4.187 5 C -0.190 4.190 6 C 0.018 3.982 7 H 0.104 0.896 8 C -0.131 4.131 9 C -0.171 4.171 10 C 0.296 3.704 11 O -0.469 6.469 12 N -0.374 5.374 13 C 0.001 3.999 14 C -0.155 4.155 15 C -0.066 4.066 16 N -0.320 5.320 17 C -0.071 4.071 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.181 1.181 27 H -0.200 1.200 28 H -0.154 1.154 29 O -0.314 6.314 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.252 0.748 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.061 0.939 48 H 0.164 0.836 49 H 0.131 0.869 50 H 0.095 0.905 51 H 0.226 0.774 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.473 4.692 39.013 41.226 hybrid contribution -0.589 -0.715 -1.020 1.378 sum -13.063 3.976 37.993 40.372 Atomic orbital electron populations 1.21951 0.93622 1.02383 1.02874 1.22877 0.95453 0.96038 0.85069 0.90876 1.23021 1.00515 0.97528 0.97633 1.23166 1.01228 0.98884 0.95673 1.23286 0.88023 0.93470 0.93411 0.89578 1.21306 1.01909 0.96372 0.93516 1.21661 1.04955 0.96106 0.94354 1.21280 0.75368 0.90967 0.82794 1.90687 1.54259 1.25047 1.76941 1.46004 1.68401 1.11064 1.11973 1.21179 1.00421 0.89276 0.88993 1.21597 1.02635 0.98377 0.92878 1.21905 0.99863 0.96565 0.88218 1.60033 1.50079 1.18536 1.03383 1.21635 1.02609 0.93821 0.89040 1.21013 0.81844 0.86939 0.86671 1.90539 1.58236 1.17084 1.84068 1.42036 1.61977 1.08366 1.10856 1.19031 1.44316 0.94017 0.88683 0.92631 1.26100 0.95745 1.05357 0.93968 1.69801 1.45503 1.38436 1.03731 0.85377 0.79473 0.76241 0.80520 1.18127 1.20011 1.15445 1.88925 1.40468 1.67875 1.34176 0.89666 0.92603 0.92780 0.89260 0.89899 0.88699 0.91253 0.89948 0.92583 0.87596 0.86289 0.74755 0.91949 0.92247 0.90645 0.90312 0.90014 0.93868 0.83598 0.86868 0.90460 0.77436 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.36 71.98 0.67 -0.72 16 2 C 0.06 0.64 4.05 30.97 0.13 0.77 16 3 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 4 C -0.15 -1.05 6.64 31.58 0.21 -0.84 16 5 C -0.15 -1.32 6.59 31.89 0.21 -1.11 16 6 C 0.08 0.82 3.29 31.28 0.10 0.92 16 7 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 8 C -0.09 -1.26 4.26 30.59 0.13 -1.13 16 9 C -0.13 -1.53 5.65 29.85 0.17 -1.36 16 10 C 0.51 9.23 7.83 87.66 0.69 9.91 16 11 O -0.59 -15.91 15.98 -3.03 -0.05 -15.96 16 12 N -0.72 -10.40 5.56 -463.06 -2.57 -12.98 16 13 C 0.13 2.05 5.67 86.38 0.49 2.54 16 14 C -0.12 -1.85 5.59 30.59 0.17 -1.68 16 15 C 0.06 1.22 5.69 86.30 0.49 1.71 16 16 N -0.69 -19.29 6.13 -517.93 -3.17 -22.46 16 17 C 0.06 1.84 6.17 85.56 0.53 2.36 16 18 C 0.45 20.14 7.82 87.66 0.69 20.82 16 19 O -0.61 -34.04 15.78 -3.07 -0.05 -34.09 16 20 N -0.59 -27.85 5.09 -306.97 -1.56 -29.41 16 21 C -0.33 -19.48 10.16 84.04 0.85 -18.62 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 24 N -0.93 -56.40 13.96 21.66 0.30 -56.09 16 25 Si 0.96 38.71 27.74 68.60 1.90 40.61 16 26 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 27 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 28 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 29 O -0.39 -5.85 10.76 -148.98 -1.60 -7.45 16 30 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 34 H 0.08 0.51 7.70 -2.38 -0.02 0.49 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.74 8.06 -2.38 -0.02 0.72 16 37 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 38 H 0.06 1.02 8.10 -2.38 -0.02 1.00 16 39 H 0.11 1.15 8.06 -2.38 -0.02 1.13 16 40 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.42 3.74 8.47 -92.71 -0.79 2.95 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.35 10.27 8.43 -89.69 -0.76 9.51 16 49 H 0.11 2.88 8.14 -2.39 -0.02 2.87 16 50 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 51 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 52 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -83.00 424.63 -2.02 -85.02 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: -1.21 Total: 39.49 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 5.99 Total: 13.33 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -7.01 Total: -120.94 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -1.70 Total: -57.50 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 1.90 Total: 40.61 kcal Total: -83.00 -2.02 -85.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176669476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.838 kcal (2) G-P(sol) polarization free energy of solvation -82.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds