Wall clock time and date at job start Wed Apr 1 2020 01:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21275 * 120.00400 * 2 1 4 4 N 1.34783 * 119.99761 * 179.97438 * 2 1 3 5 5 C 1.47152 * 120.98285 * 6.75426 * 4 2 1 6 6 C 1.53294 * 108.38176 * 230.50753 * 5 4 2 7 7 O 1.42959 * 109.22266 * 307.69532 * 6 5 4 8 8 C 1.42958 * 114.16692 * 62.58229 * 7 6 5 9 9 C 1.47150 * 120.98239 * 186.72305 * 4 2 1 10 10 H 1.09007 * 109.68249 * 249.25554 * 9 4 2 11 11 C 1.50702 * 109.68114 * 9.76955 * 9 4 2 12 12 O 1.21278 * 119.99988 * 62.26825 * 11 9 4 13 13 N 1.34787 * 120.00111 * 242.27299 * 11 9 4 14 14 C 1.46491 * 119.99965 * 180.02562 * 13 11 9 15 15 H 1.09006 * 109.47287 * 324.99406 * 14 13 11 16 16 C 1.52998 * 109.47514 * 85.00097 * 14 13 11 17 17 C 1.53006 * 109.47039 * 204.99785 * 14 13 11 18 18 C 1.53003 * 109.46970 * 65.00051 * 17 14 13 19 19 C 1.52993 * 109.47121 * 180.02562 * 18 17 14 20 20 C 1.53003 * 109.47121 * 180.02562 * 19 18 17 21 21 N 1.46507 * 109.46945 * 179.97438 * 20 19 18 22 22 C 1.36936 * 119.99686 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00084 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99919 * 180.27237 * 22 21 20 25 25 N 1.31615 * 120.00281 * 179.72710 * 24 22 21 26 26 Si 1.86800 * 119.99632 * 359.73213 * 24 22 21 27 27 H 1.48504 * 109.47308 * 89.99876 * 26 24 22 28 28 H 1.48500 * 109.46836 * 209.99288 * 26 24 22 29 29 H 1.48499 * 109.47535 * 329.99645 * 26 24 22 30 30 H 1.09000 * 109.47137 * 185.47759 * 1 2 3 31 31 H 1.09001 * 109.47102 * 305.48040 * 1 2 3 32 32 H 1.08999 * 109.46613 * 65.47923 * 1 2 3 33 33 H 1.09005 * 109.68107 * 350.23071 * 5 4 2 34 34 H 1.08995 * 109.68426 * 110.78108 * 5 4 2 35 35 H 1.09008 * 109.51164 * 67.62266 * 6 5 4 36 36 H 1.08995 * 109.51126 * 187.71566 * 6 5 4 37 37 H 1.09005 * 109.51684 * 177.49180 * 8 7 6 38 38 H 1.09006 * 109.51337 * 57.34134 * 8 7 6 39 39 H 0.96998 * 119.99532 * 359.97438 * 13 11 9 40 40 H 1.09005 * 109.46886 * 59.99330 * 16 14 13 41 41 H 1.09002 * 109.47584 * 179.97438 * 16 14 13 42 42 H 1.08999 * 109.46648 * 299.99968 * 16 14 13 43 43 H 1.08994 * 109.47024 * 305.00514 * 17 14 13 44 44 H 1.08997 * 109.47386 * 184.99662 * 17 14 13 45 45 H 1.09002 * 109.47358 * 60.00006 * 18 17 14 46 46 H 1.09004 * 109.47267 * 300.00416 * 18 17 14 47 47 H 1.09002 * 109.47324 * 60.00226 * 19 18 17 48 48 H 1.08997 * 109.47189 * 299.99584 * 19 18 17 49 49 H 1.08994 * 109.47390 * 60.00150 * 20 19 18 50 50 H 1.09003 * 109.47163 * 299.99726 * 20 19 18 51 51 H 0.96996 * 120.00482 * 0.02562 * 21 20 19 52 52 H 0.96997 * 120.00346 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4746 -2.4498 -0.1473 6 6 1.9344 -3.3870 0.9752 7 8 3.3627 -3.4461 0.9836 8 6 3.9987 -2.1952 1.2563 9 6 3.6446 -1.1968 0.1482 10 1 4.1020 -1.5113 -0.7899 11 6 4.1448 0.1747 0.5220 12 8 3.7927 0.6855 1.5640 13 7 4.9835 0.8339 -0.3020 14 6 5.4702 2.1669 0.0616 15 1 4.6863 2.7078 0.5917 16 6 6.6978 2.0329 0.9649 17 6 5.8513 2.9340 -1.2062 18 6 4.5990 3.1768 -2.0511 19 6 4.9801 3.9434 -3.3192 20 6 3.7277 4.1867 -4.1638 21 7 4.0926 4.9213 -5.3778 22 6 3.1292 5.2539 -6.2923 23 1 2.1004 4.9751 -6.1184 24 6 3.4757 5.9450 -7.4452 25 7 2.5506 6.2600 -8.3268 26 14 5.2551 6.4276 -7.7455 27 1 5.9443 5.3413 -8.4874 28 1 5.3006 7.6786 -8.5444 29 1 5.9352 6.6466 -6.4437 30 1 -0.3633 -1.0230 0.0981 31 1 -0.3633 0.5965 0.8369 32 1 -0.3632 0.4265 -0.9350 33 1 0.3993 -2.2874 -0.0727 34 1 1.7134 -2.8910 -1.1149 35 1 1.5800 -3.0081 1.9340 36 1 1.5289 -4.3844 0.8057 37 1 5.0792 -2.3353 1.2885 38 1 3.6518 -1.8119 2.2160 39 1 5.2654 0.4252 -1.1353 40 1 7.4817 1.4920 0.4346 41 1 7.0602 3.0248 1.2350 42 1 6.4263 1.4864 1.8680 43 1 6.5702 2.3508 -1.7815 44 1 6.2957 3.8908 -0.9322 45 1 3.8799 3.7601 -1.4759 46 1 4.1544 2.2200 -2.3251 47 1 5.6989 3.3597 -3.8944 48 1 5.4248 4.9001 -3.0456 49 1 3.0093 4.7705 -3.5885 50 1 3.2825 3.2301 -4.4375 51 1 5.0166 5.1713 -5.5341 52 1 2.7928 6.7425 -9.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176677636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:45 Heat of formation + Delta-G solvation = -98.665984 kcal Electronic energy + Delta-G solvation = -31070.559846 eV Core-core repulsion = 26877.893198 eV Total energy + Delta-G solvation = -4192.666648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35623 -39.21888 -38.64779 -36.85631 -35.33528 -35.22526 -33.24985 -32.65853 -31.33891 -30.41859 -30.18892 -28.03423 -27.68477 -25.33568 -24.13757 -22.83420 -22.08987 -21.31609 -20.80234 -20.59087 -19.48752 -17.99822 -17.44361 -17.36516 -17.05871 -16.42271 -16.10763 -15.85242 -15.46879 -15.08146 -15.01032 -14.68546 -14.45774 -14.14171 -14.04198 -13.89521 -13.75739 -13.45571 -13.14731 -12.94394 -12.76240 -12.65345 -12.48482 -12.37333 -12.22644 -11.96347 -11.82074 -11.55915 -11.50334 -11.36550 -11.06709 -10.82463 -10.79286 -10.72822 -10.30364 -10.25647 -10.05111 -9.94645 -9.76439 -9.54456 -9.14252 -8.99233 -8.84208 -7.17117 -5.72545 -3.07181 2.05546 2.34537 2.88298 2.90837 3.32559 3.40287 3.43340 3.47551 4.06985 4.19341 4.31935 4.44984 4.50071 4.53444 4.60845 4.63133 4.68654 4.82680 4.96750 4.98646 5.06451 5.09338 5.12473 5.15744 5.29944 5.30808 5.41406 5.46638 5.52883 5.55011 5.65542 5.66426 5.76533 5.81264 5.94134 5.98643 6.14938 6.16281 6.28859 6.29934 6.46162 6.50558 6.52792 6.86507 6.87320 6.90116 7.42598 7.80264 8.05154 8.23057 8.47032 9.26812 9.99432 10.20348 11.46215 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.002381 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.782029 B =11757.596625 C =12968.244057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.500 6.500 4 N -0.612 5.612 5 C 0.070 3.930 6 C 0.043 3.957 7 O -0.373 6.373 8 C 0.063 3.937 9 C 0.091 3.909 10 H 0.094 0.906 11 C 0.540 3.460 12 O -0.530 6.530 13 N -0.715 5.715 14 C 0.147 3.853 15 H 0.090 0.910 16 C -0.162 4.162 17 C -0.125 4.125 18 C -0.109 4.109 19 C -0.129 4.129 20 C 0.158 3.842 21 N -0.759 5.759 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.001 3.999 25 N -0.937 5.937 26 Si 0.886 3.114 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.396 0.604 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.025 0.975 50 H 0.023 0.977 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -23.245 23.378 33.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.374 6.374 4 N -0.351 5.351 5 C -0.053 4.053 6 C -0.034 4.034 7 O -0.291 6.291 8 C -0.015 4.015 9 C -0.016 4.016 10 H 0.112 0.888 11 C 0.326 3.674 12 O -0.406 6.406 13 N -0.367 5.367 14 C 0.043 3.957 15 H 0.108 0.892 16 C -0.221 4.221 17 C -0.163 4.163 18 C -0.147 4.147 19 C -0.167 4.167 20 C 0.031 3.969 21 N -0.404 5.404 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.195 4.195 25 N -0.585 5.585 26 Si 0.717 3.283 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.229 0.771 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.043 0.957 50 H 0.041 0.959 51 H 0.192 0.808 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.907 -22.397 24.000 32.882 hybrid contribution 1.115 0.346 -0.916 1.484 sum 3.021 -22.050 23.084 32.066 Atomic orbital electron populations 1.21989 0.91021 1.04317 1.05908 1.20956 0.90935 0.82824 0.75427 1.90790 1.68601 1.30408 1.47575 1.48130 1.05235 1.06866 1.74862 1.22645 0.98587 0.83641 1.00402 1.23056 0.81702 1.00779 0.97892 1.88000 1.18836 1.30084 1.92176 1.22836 0.98961 0.83298 0.96381 1.21862 0.82653 0.95819 1.01241 0.88809 1.19468 0.77917 0.85612 0.84401 1.90681 1.56768 1.67570 1.25600 1.45859 1.48807 1.18627 1.23397 1.20951 0.96251 0.82785 0.95683 0.89197 1.22187 0.97683 1.02270 0.99925 1.21916 0.98674 1.00461 0.95271 1.21446 0.96850 1.00687 0.95756 1.21784 0.99047 0.99967 0.95907 1.20613 0.94326 0.94873 0.87135 1.42755 1.07140 1.68511 1.21991 1.19099 0.90855 1.29528 0.97669 0.89313 1.24686 0.97093 1.00760 0.96913 1.69704 1.31696 1.45533 1.11564 0.86510 0.86217 0.78035 0.77581 1.21127 1.21732 1.20337 0.90159 0.88445 0.88218 0.87569 0.89898 0.92205 0.87179 0.87239 0.91128 0.77052 0.92644 0.91672 0.92406 0.91650 0.90475 0.91769 0.92034 0.92348 0.92220 0.95732 0.95863 0.80770 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.09 36.01 0.36 -0.85 16 2 C 0.51 5.66 7.48 -10.98 -0.08 5.57 16 3 O -0.50 -7.81 13.27 -18.33 -0.24 -8.05 16 4 N -0.61 -5.33 3.02 -166.06 -0.50 -5.83 16 5 C 0.07 0.34 6.57 -3.53 -0.02 0.32 16 6 C 0.04 0.21 6.98 37.31 0.26 0.47 16 7 O -0.37 -2.79 10.74 -35.23 -0.38 -3.17 16 8 C 0.06 0.49 6.24 37.31 0.23 0.72 16 9 C 0.09 0.82 3.50 -68.58 -0.24 0.58 16 10 H 0.09 0.70 7.93 -51.92 -0.41 0.29 16 11 C 0.54 6.45 4.21 -10.98 -0.05 6.41 16 12 O -0.53 -8.34 14.62 -18.34 -0.27 -8.61 16 13 N -0.71 -7.52 4.53 -53.80 -0.24 -7.77 16 14 C 0.15 1.64 2.57 -67.93 -0.17 1.47 16 15 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 16 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 17 C -0.13 -1.35 4.75 -26.73 -0.13 -1.48 16 18 C -0.11 -1.50 5.10 -26.73 -0.14 -1.63 16 19 C -0.13 -2.09 5.33 -26.73 -0.14 -2.23 16 20 C 0.16 3.30 6.26 -4.04 -0.03 3.27 16 21 N -0.76 -19.24 5.41 -59.90 -0.32 -19.56 16 22 C -0.24 -7.20 10.47 -15.06 -0.16 -7.35 16 23 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 24 C 0.00 0.02 5.50 -17.43 -0.10 -0.07 16 25 N -0.94 -30.27 13.97 55.49 0.78 -29.50 16 26 Si 0.89 22.80 27.73 -169.99 -4.71 18.09 16 27 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 29 H -0.28 -6.73 6.52 56.52 0.37 -6.37 16 30 H 0.08 0.30 5.21 -51.93 -0.27 0.03 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.11 0.27 5.14 -51.93 -0.27 0.01 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 36 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 39 H 0.40 3.36 8.45 -40.82 -0.34 3.02 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.36 8.81 5.53 -40.82 -0.23 8.58 16 52 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -39.04 410.68 -8.83 -47.87 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -9.08 Total: 6.32 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -0.04 Total: 4.02 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.29 Total: -62.66 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.89 Total: -19.83 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -39.04 -8.83 -47.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176677636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.792 kcal (2) G-P(sol) polarization free energy of solvation -39.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds