Wall clock time and date at job start Wed Apr 1 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21275 * 120.00400 * 2 1 4 4 N 1.34783 * 119.99761 * 179.97438 * 2 1 3 5 5 C 1.47152 * 120.98285 * 6.75426 * 4 2 1 6 6 C 1.53294 * 108.38176 * 230.50753 * 5 4 2 7 7 O 1.42959 * 109.22266 * 307.69532 * 6 5 4 8 8 C 1.42958 * 114.16692 * 62.58229 * 7 6 5 9 9 C 1.47150 * 120.98239 * 186.72305 * 4 2 1 10 10 H 1.09007 * 109.68249 * 249.25554 * 9 4 2 11 11 C 1.50702 * 109.68114 * 9.76955 * 9 4 2 12 12 O 1.21278 * 119.99988 * 62.26825 * 11 9 4 13 13 N 1.34787 * 120.00111 * 242.27299 * 11 9 4 14 14 C 1.46491 * 119.99965 * 180.02562 * 13 11 9 15 15 H 1.09006 * 109.47287 * 324.99406 * 14 13 11 16 16 C 1.52998 * 109.47514 * 85.00097 * 14 13 11 17 17 C 1.53006 * 109.47039 * 204.99785 * 14 13 11 18 18 C 1.53003 * 109.46970 * 65.00051 * 17 14 13 19 19 C 1.52993 * 109.47121 * 180.02562 * 18 17 14 20 20 C 1.53003 * 109.47121 * 180.02562 * 19 18 17 21 21 N 1.46507 * 109.46945 * 179.97438 * 20 19 18 22 22 C 1.36936 * 119.99686 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00084 * 0.02562 * 22 21 20 24 24 C 1.38816 * 119.99919 * 180.27237 * 22 21 20 25 25 N 1.31615 * 120.00281 * 179.72710 * 24 22 21 26 26 Si 1.86800 * 119.99632 * 359.73213 * 24 22 21 27 27 H 1.48504 * 109.47308 * 89.99876 * 26 24 22 28 28 H 1.48500 * 109.46836 * 209.99288 * 26 24 22 29 29 H 1.48499 * 109.47535 * 329.99645 * 26 24 22 30 30 H 1.09000 * 109.47137 * 185.47759 * 1 2 3 31 31 H 1.09001 * 109.47102 * 305.48040 * 1 2 3 32 32 H 1.08999 * 109.46613 * 65.47923 * 1 2 3 33 33 H 1.09005 * 109.68107 * 350.23071 * 5 4 2 34 34 H 1.08995 * 109.68426 * 110.78108 * 5 4 2 35 35 H 1.09008 * 109.51164 * 67.62266 * 6 5 4 36 36 H 1.08995 * 109.51126 * 187.71566 * 6 5 4 37 37 H 1.09005 * 109.51684 * 177.49180 * 8 7 6 38 38 H 1.09006 * 109.51337 * 57.34134 * 8 7 6 39 39 H 0.96998 * 119.99532 * 359.97438 * 13 11 9 40 40 H 1.09005 * 109.46886 * 59.99330 * 16 14 13 41 41 H 1.09002 * 109.47584 * 179.97438 * 16 14 13 42 42 H 1.08999 * 109.46648 * 299.99968 * 16 14 13 43 43 H 1.08994 * 109.47024 * 305.00514 * 17 14 13 44 44 H 1.08997 * 109.47386 * 184.99662 * 17 14 13 45 45 H 1.09002 * 109.47358 * 60.00006 * 18 17 14 46 46 H 1.09004 * 109.47267 * 300.00416 * 18 17 14 47 47 H 1.09002 * 109.47324 * 60.00226 * 19 18 17 48 48 H 1.08997 * 109.47189 * 299.99584 * 19 18 17 49 49 H 1.08994 * 109.47390 * 60.00150 * 20 19 18 50 50 H 1.09003 * 109.47163 * 299.99726 * 20 19 18 51 51 H 0.96996 * 120.00482 * 0.02562 * 21 20 19 52 52 H 0.96997 * 120.00346 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4746 -2.4498 -0.1473 6 6 1.9344 -3.3870 0.9752 7 8 3.3627 -3.4461 0.9836 8 6 3.9987 -2.1952 1.2563 9 6 3.6446 -1.1968 0.1482 10 1 4.1020 -1.5113 -0.7899 11 6 4.1448 0.1747 0.5220 12 8 3.7927 0.6855 1.5640 13 7 4.9835 0.8339 -0.3020 14 6 5.4702 2.1669 0.0616 15 1 4.6863 2.7078 0.5917 16 6 6.6978 2.0329 0.9649 17 6 5.8513 2.9340 -1.2062 18 6 4.5990 3.1768 -2.0511 19 6 4.9801 3.9434 -3.3192 20 6 3.7277 4.1867 -4.1638 21 7 4.0926 4.9213 -5.3778 22 6 3.1292 5.2539 -6.2923 23 1 2.1004 4.9751 -6.1184 24 6 3.4757 5.9450 -7.4452 25 7 2.5506 6.2600 -8.3268 26 14 5.2551 6.4276 -7.7455 27 1 5.9443 5.3413 -8.4874 28 1 5.3006 7.6786 -8.5444 29 1 5.9352 6.6466 -6.4437 30 1 -0.3633 -1.0230 0.0981 31 1 -0.3633 0.5965 0.8369 32 1 -0.3632 0.4265 -0.9350 33 1 0.3993 -2.2874 -0.0727 34 1 1.7134 -2.8910 -1.1149 35 1 1.5800 -3.0081 1.9340 36 1 1.5289 -4.3844 0.8057 37 1 5.0792 -2.3353 1.2885 38 1 3.6518 -1.8119 2.2160 39 1 5.2654 0.4252 -1.1353 40 1 7.4817 1.4920 0.4346 41 1 7.0602 3.0248 1.2350 42 1 6.4263 1.4864 1.8680 43 1 6.5702 2.3508 -1.7815 44 1 6.2957 3.8908 -0.9322 45 1 3.8799 3.7601 -1.4759 46 1 4.1544 2.2200 -2.3251 47 1 5.6989 3.3597 -3.8944 48 1 5.4248 4.9001 -3.0456 49 1 3.0093 4.7705 -3.5885 50 1 3.2825 3.2301 -4.4375 51 1 5.0166 5.1713 -5.5341 52 1 2.7928 6.7425 -9.1326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176677636.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:44 Heat of formation + Delta-G solvation = -127.633479 kcal Electronic energy + Delta-G solvation = -31071.815970 eV Core-core repulsion = 26877.893198 eV Total energy + Delta-G solvation = -4193.922773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.10644 -40.05576 -39.35401 -38.04282 -36.91827 -35.93587 -34.79063 -33.56911 -32.96895 -31.56659 -30.79201 -29.08457 -28.62335 -26.08254 -25.64582 -23.69423 -23.28918 -22.51642 -22.14459 -21.54108 -20.21411 -19.64605 -18.76366 -18.04320 -17.79619 -17.16191 -16.78625 -16.66512 -16.56915 -16.27862 -16.02150 -15.90431 -15.71426 -15.42413 -14.90927 -14.82988 -14.74222 -14.59738 -14.36811 -14.21994 -14.16504 -13.54738 -13.28130 -13.10143 -13.05902 -12.99990 -12.95267 -12.90013 -12.49559 -12.46996 -12.32833 -12.06817 -12.01941 -11.91219 -11.80458 -11.55190 -11.47108 -11.38416 -11.00798 -10.84223 -10.62945 -9.99967 -9.71275 -9.35430 -8.06600 -5.41481 1.33326 1.35923 1.40745 1.48494 1.55019 2.11615 2.13487 2.46211 2.80403 3.23999 3.43840 3.47747 3.61874 3.78609 3.82670 3.90201 3.94641 3.99810 4.02226 4.05346 4.18846 4.32433 4.33234 4.37024 4.51810 4.54020 4.56467 4.58396 4.60105 4.73985 4.74693 4.82928 4.87412 4.88096 4.94477 4.99516 5.04245 5.10461 5.18861 5.22031 5.30808 5.39866 5.46616 5.65708 5.70235 5.96177 6.17452 6.19634 6.59821 7.02596 7.03490 7.38637 7.78580 8.00830 9.15122 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013531 B = 0.002381 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.782029 B =11757.596625 C =12968.244057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.494 3.506 3 O -0.557 6.557 4 N -0.611 5.611 5 C 0.066 3.934 6 C 0.039 3.961 7 O -0.382 6.382 8 C 0.072 3.928 9 C 0.089 3.911 10 H 0.113 0.887 11 C 0.537 3.463 12 O -0.575 6.575 13 N -0.709 5.709 14 C 0.150 3.850 15 H 0.051 0.949 16 C -0.153 4.153 17 C -0.114 4.114 18 C -0.099 4.099 19 C -0.114 4.114 20 C 0.154 3.846 21 N -0.759 5.759 22 C -0.244 4.244 23 H 0.050 0.950 24 C -0.066 4.066 25 N -0.984 5.984 26 Si 0.963 3.037 27 H -0.273 1.273 28 H -0.293 1.293 29 H -0.251 1.251 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.051 0.949 39 H 0.407 0.593 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.041 0.959 46 H 0.055 0.945 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.010 0.990 50 H 0.017 0.983 51 H 0.368 0.632 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 -25.157 23.466 34.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.285 3.715 3 O -0.435 6.435 4 N -0.348 5.348 5 C -0.055 4.055 6 C -0.038 4.038 7 O -0.300 6.300 8 C -0.007 4.007 9 C -0.018 4.018 10 H 0.131 0.869 11 C 0.325 3.675 12 O -0.454 6.454 13 N -0.362 5.362 14 C 0.046 3.954 15 H 0.069 0.931 16 C -0.211 4.211 17 C -0.152 4.152 18 C -0.137 4.137 19 C -0.152 4.152 20 C 0.027 3.973 21 N -0.405 5.405 22 C -0.375 4.375 23 H 0.068 0.932 24 C -0.258 4.258 25 N -0.634 5.634 26 Si 0.789 3.211 27 H -0.199 1.199 28 H -0.219 1.219 29 H -0.175 1.175 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.069 0.931 39 H 0.243 0.757 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.028 0.972 50 H 0.035 0.965 51 H 0.202 0.798 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.213 -24.387 24.106 34.548 hybrid contribution 0.236 0.866 -0.922 1.287 sum 4.448 -23.521 23.184 33.325 Atomic orbital electron populations 1.22008 0.88221 1.06649 1.05730 1.21719 0.92533 0.82677 0.74559 1.90760 1.69899 1.32476 1.50329 1.48304 1.05297 1.07710 1.73532 1.22956 0.99708 0.81737 1.01078 1.23300 0.80408 1.02383 0.97739 1.87993 1.20370 1.29560 1.92073 1.22740 0.99898 0.83152 0.94862 1.21954 0.83176 0.94207 1.02493 0.86916 1.19956 0.77321 0.86527 0.83744 1.90647 1.58246 1.68957 1.27595 1.45834 1.48408 1.18310 1.23630 1.20829 0.95829 0.82833 0.95934 0.93113 1.22097 0.97135 1.02933 0.98979 1.21835 0.97395 1.01389 0.94556 1.21312 0.97926 0.99551 0.94905 1.21662 0.96684 1.00951 0.95905 1.20776 0.96713 0.93594 0.86177 1.42731 1.06608 1.68808 1.22373 1.19053 0.90302 1.29318 0.98858 0.93226 1.25628 1.02653 1.00963 0.96516 1.69898 1.34598 1.46654 1.12289 0.85290 0.79692 0.77549 0.78538 1.19863 1.21911 1.17499 0.86499 0.88821 0.88183 0.85081 0.88652 0.92498 0.84218 0.85746 0.93087 0.75718 0.90589 0.90734 0.93981 0.89202 0.89401 0.93983 0.92666 0.90673 0.91511 0.97167 0.96499 0.79836 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.09 71.24 0.72 -1.53 16 2 C 0.49 11.16 7.48 87.66 0.66 11.82 16 3 O -0.56 -18.42 13.27 19.83 0.26 -18.16 16 4 N -0.61 -10.16 3.02 -797.67 -2.41 -12.57 16 5 C 0.07 0.48 6.57 86.35 0.57 1.05 16 6 C 0.04 0.28 6.98 72.08 0.50 0.78 16 7 O -0.38 -5.00 10.74 -148.98 -1.60 -6.60 16 8 C 0.07 1.06 6.24 72.08 0.45 1.51 16 9 C 0.09 1.55 3.50 44.22 0.15 1.70 16 10 H 0.11 1.50 7.93 -2.38 -0.02 1.48 16 11 C 0.54 13.15 4.21 87.66 0.37 13.52 16 12 O -0.58 -19.20 14.62 19.82 0.29 -18.91 16 13 N -0.71 -14.75 4.53 -442.52 -2.00 -16.76 16 14 C 0.15 3.31 2.57 44.99 0.12 3.43 16 15 H 0.05 1.54 7.58 -2.38 -0.02 1.52 16 16 C -0.15 -2.71 9.48 71.98 0.68 -2.03 16 17 C -0.11 -2.24 4.75 30.60 0.15 -2.09 16 18 C -0.10 -2.64 5.10 30.59 0.16 -2.48 16 19 C -0.11 -3.47 5.33 30.59 0.16 -3.31 16 20 C 0.15 6.42 6.26 86.38 0.54 6.96 16 21 N -0.76 -37.95 5.41 -343.44 -1.86 -39.80 16 22 C -0.24 -14.82 10.47 84.03 0.88 -13.94 16 23 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 24 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 25 N -0.98 -64.86 13.97 21.65 0.30 -64.56 16 26 Si 0.96 46.37 27.73 68.60 1.90 48.27 16 27 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 30 H 0.12 0.59 5.21 -2.39 -0.01 0.58 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.13 0.24 5.14 -2.38 -0.01 0.23 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.05 0.95 7.86 -2.38 -0.02 0.93 16 39 H 0.41 6.38 8.45 -92.71 -0.78 5.59 16 40 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.05 1.54 7.75 -2.39 -0.02 1.52 16 47 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.37 17.08 5.53 -92.71 -0.51 16.57 16 52 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -89.17 410.68 1.02 -88.15 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -0.44 Total: 29.13 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 6.57 Total: 11.81 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -5.97 Total: -133.69 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.05 Total: -43.67 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.90 Total: 48.27 kcal Total: -89.17 1.02 -88.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176677636.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.484 kcal (2) G-P(sol) polarization free energy of solvation -89.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds