Wall clock time and date at job start Wed Apr 1 2020 01:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00183 * 2 1 4 4 N 1.34779 * 120.00411 * 179.97438 * 2 1 3 5 5 C 1.47154 * 120.97960 * 5.96626 * 4 2 1 6 6 C 1.53296 * 108.38802 * 129.48506 * 5 4 2 7 7 O 1.42962 * 109.22032 * 52.30050 * 6 5 4 8 8 C 1.42964 * 114.16828 * 297.41878 * 7 6 5 9 9 C 1.47142 * 120.98560 * 185.98619 * 4 2 1 10 10 H 1.08999 * 109.71396 * 110.77574 * 9 4 2 11 11 C 1.50704 * 109.68439 * 350.23624 * 9 4 2 12 12 O 1.21286 * 119.99906 * 310.41146 * 11 9 4 13 13 N 1.34770 * 119.99951 * 130.13221 * 11 9 4 14 14 C 1.46502 * 119.99749 * 180.02562 * 13 11 9 15 15 H 1.08990 * 109.47329 * 35.00039 * 14 13 11 16 16 C 1.53000 * 109.47197 * 274.99535 * 14 13 11 17 17 C 1.53007 * 109.47096 * 155.00081 * 14 13 11 18 18 C 1.52997 * 109.46847 * 294.99887 * 17 14 13 19 19 C 1.53004 * 109.47153 * 180.02562 * 18 17 14 20 20 C 1.52997 * 109.47153 * 179.97438 * 19 18 17 21 21 N 1.46508 * 109.46863 * 179.97438 * 20 19 18 22 22 C 1.36932 * 119.99687 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00194 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99892 * 179.97438 * 22 21 20 25 25 N 1.31616 * 120.00152 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99928 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47503 * 89.99657 * 26 24 22 28 28 H 1.48500 * 109.47133 * 209.99653 * 26 24 22 29 29 H 1.48505 * 109.46890 * 329.99296 * 26 24 22 30 30 H 1.08998 * 109.46626 * 185.50011 * 1 2 3 31 31 H 1.08990 * 109.47052 * 305.50047 * 1 2 3 32 32 H 1.08998 * 109.47142 * 65.50404 * 1 2 3 33 33 H 1.09001 * 109.68338 * 9.76009 * 5 4 2 34 34 H 1.09002 * 109.71254 * 249.22968 * 5 4 2 35 35 H 1.09005 * 109.50991 * 292.38050 * 6 5 4 36 36 H 1.08994 * 109.55736 * 172.25385 * 6 5 4 37 37 H 1.09000 * 109.51327 * 302.66101 * 8 7 6 38 38 H 1.08995 * 109.55837 * 182.52798 * 8 7 6 39 39 H 0.96997 * 120.00443 * 0.02562 * 13 11 9 40 40 H 1.08991 * 109.47657 * 180.02562 * 16 14 13 41 41 H 1.09003 * 109.47317 * 300.00799 * 16 14 13 42 42 H 1.09004 * 109.46432 * 60.00127 * 16 14 13 43 43 H 1.09005 * 109.46768 * 54.99699 * 17 14 13 44 44 H 1.09002 * 109.47003 * 174.99928 * 17 14 13 45 45 H 1.09005 * 109.47283 * 299.99496 * 18 17 14 46 46 H 1.09002 * 109.47286 * 60.00214 * 18 17 14 47 47 H 1.09001 * 109.46711 * 300.00240 * 19 18 17 48 48 H 1.09003 * 109.47164 * 59.99322 * 19 18 17 49 49 H 1.08997 * 109.47077 * 299.99164 * 20 19 18 50 50 H 1.08992 * 109.47324 * 59.99987 * 20 19 18 51 51 H 0.96993 * 119.99638 * 0.02562 * 21 20 19 52 52 H 0.97008 * 120.00206 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 1.4731 -2.4507 -0.1300 6 6 2.1482 -3.2645 -1.2399 7 8 3.5526 -3.3373 -0.9823 8 6 4.2156 -2.0707 -0.9906 9 6 3.6462 -1.1958 0.1321 10 1 3.9204 -1.6159 1.0998 11 6 4.1940 0.2031 0.0126 12 8 3.8520 0.9115 -0.9106 13 7 5.0596 0.6689 0.9347 14 6 5.5916 2.0289 0.8188 15 1 4.8250 2.6851 0.4070 16 6 6.8093 2.0230 -0.1076 17 6 6.0059 2.5341 2.2024 18 6 4.7673 2.6585 3.0918 19 6 5.1814 3.1643 4.4751 20 6 3.9427 3.2892 5.3644 21 7 4.3394 3.7730 6.6892 22 6 3.3927 3.9638 7.6600 23 1 2.3538 3.7574 7.4493 24 6 3.7686 4.4216 8.9154 25 7 2.8589 4.6046 9.8488 26 14 5.5657 4.7780 9.2801 27 1 5.8671 6.1934 8.9473 28 1 5.8350 4.5402 10.7210 29 1 6.4236 3.8836 8.4620 30 1 -0.3632 -1.0229 0.0985 31 1 -0.3633 0.5967 0.8366 32 1 -0.3633 0.4261 -0.9351 33 1 0.4301 -2.2699 -0.3900 34 1 1.5272 -2.9978 0.8112 35 1 1.9791 -2.7794 -2.2013 36 1 1.7293 -4.2705 -1.2610 37 1 4.0539 -1.5814 -1.9511 38 1 5.2839 -2.2171 -0.8318 39 1 5.3303 0.1037 1.6750 40 1 7.2055 3.0348 -0.1935 41 1 7.5760 1.3667 0.3043 42 1 6.5141 1.6631 -1.0932 43 1 6.7065 1.8301 2.6514 44 1 6.4829 3.5094 2.1052 45 1 4.0667 3.3626 2.6427 46 1 4.2903 1.6832 3.1889 47 1 5.8822 2.4606 4.9244 48 1 5.6582 4.1396 4.3777 49 1 3.2423 3.9932 4.9149 50 1 3.4655 2.3141 5.4619 51 1 5.2724 3.9587 6.8782 52 1 3.1215 4.9249 10.7260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176677638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:52 Heat of formation + Delta-G solvation = -113.465894 kcal Electronic energy + Delta-G solvation = -30957.816038 eV Core-core repulsion = 26764.507618 eV Total energy + Delta-G solvation = -4193.308420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09537 -40.00673 -39.31035 -38.00850 -36.88942 -35.89893 -34.77899 -33.55041 -32.95254 -31.55672 -30.77213 -29.08178 -28.56642 -26.06604 -25.64253 -23.68146 -23.29193 -22.50953 -22.14352 -21.51559 -20.14375 -19.64013 -18.83529 -17.98131 -17.75108 -17.14907 -16.73671 -16.66283 -16.56873 -16.26569 -16.01703 -15.90879 -15.72407 -15.44772 -14.89820 -14.82155 -14.68780 -14.53261 -14.36804 -14.17923 -14.11423 -13.53808 -13.28000 -13.07441 -13.03520 -12.98559 -12.95632 -12.91473 -12.50881 -12.46355 -12.29526 -12.09324 -11.98337 -11.90959 -11.79276 -11.56196 -11.46869 -11.36781 -11.00474 -10.82924 -10.39111 -9.85649 -9.57619 -9.34804 -8.06222 -5.41040 1.36195 1.36223 1.41261 1.48775 1.61266 2.13838 2.16839 2.46584 2.80667 3.24513 3.44973 3.51756 3.62589 3.80367 3.83975 3.91686 3.98542 4.01829 4.03461 4.07391 4.19462 4.33276 4.35642 4.37660 4.52716 4.53697 4.54387 4.58021 4.60391 4.74507 4.75232 4.83596 4.87402 4.88223 4.94392 4.99551 5.03102 5.10738 5.20370 5.27002 5.31277 5.40170 5.45761 5.66691 5.70736 5.95769 6.17850 6.25188 6.62638 7.04054 7.11538 7.49063 7.79304 8.01217 9.15451 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013417 B = 0.002299 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.419985 B =12174.712151 C =13211.080556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.486 3.514 3 O -0.551 6.551 4 N -0.613 5.613 5 C 0.068 3.932 6 C 0.039 3.961 7 O -0.381 6.381 8 C 0.072 3.928 9 C 0.090 3.910 10 H 0.115 0.885 11 C 0.520 3.480 12 O -0.542 6.542 13 N -0.715 5.715 14 C 0.149 3.851 15 H 0.051 0.949 16 C -0.153 4.153 17 C -0.114 4.114 18 C -0.102 4.102 19 C -0.114 4.114 20 C 0.152 3.848 21 N -0.759 5.759 22 C -0.244 4.244 23 H 0.050 0.950 24 C -0.067 4.067 25 N -0.985 5.985 26 Si 0.963 3.037 27 H -0.277 1.277 28 H -0.292 1.292 29 H -0.247 1.247 30 H 0.114 0.886 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.140 0.860 37 H 0.048 0.952 38 H 0.128 0.872 39 H 0.409 0.591 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.043 0.957 46 H 0.057 0.943 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.012 0.988 50 H 0.018 0.982 51 H 0.368 0.632 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -20.764 -27.864 34.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.276 3.724 3 O -0.428 6.428 4 N -0.351 5.351 5 C -0.053 4.053 6 C -0.038 4.038 7 O -0.299 6.299 8 C -0.007 4.007 9 C -0.018 4.018 10 H 0.133 0.867 11 C 0.305 3.695 12 O -0.417 6.417 13 N -0.369 5.369 14 C 0.045 3.955 15 H 0.069 0.931 16 C -0.211 4.211 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.152 4.152 20 C 0.026 3.974 21 N -0.405 5.405 22 C -0.375 4.375 23 H 0.068 0.932 24 C -0.258 4.258 25 N -0.635 5.635 26 Si 0.789 3.211 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.172 1.172 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.146 0.854 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.158 0.842 37 H 0.066 0.934 38 H 0.145 0.855 39 H 0.245 0.755 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.030 0.970 50 H 0.036 0.964 51 H 0.202 0.798 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.769 -19.855 -28.439 34.889 hybrid contribution 0.233 0.703 0.976 1.225 sum 4.002 -19.152 -27.463 33.720 Atomic orbital electron populations 1.22006 0.88683 1.06471 1.05502 1.21695 0.92284 0.83090 0.75329 1.90985 1.69911 1.33065 1.48871 1.48158 1.05068 1.07600 1.74260 1.22888 0.98576 0.82400 1.01413 1.23290 0.80570 1.03167 0.96736 1.87997 1.21977 1.27686 1.92274 1.22748 0.98462 0.83835 0.95610 1.21933 0.82669 0.94180 1.02988 0.86701 1.20067 0.78294 0.88183 0.82961 1.90703 1.57078 1.58731 1.35234 1.45888 1.46635 1.15956 1.28376 1.20838 0.95406 0.82952 0.96341 0.93100 1.22087 0.97248 1.03190 0.98604 1.21838 0.97448 1.03219 0.92668 1.21360 0.98055 1.00747 0.93904 1.21659 0.96753 1.02017 0.94783 1.20800 0.96653 0.95823 0.84147 1.42730 1.05891 1.81399 1.10522 1.19052 0.90067 1.36430 0.91941 0.93199 1.25631 1.02750 1.01725 0.95708 1.69903 1.34779 1.53969 1.04817 0.85291 0.79928 0.78727 0.77133 1.20275 1.21841 1.17179 0.86779 0.89015 0.88349 0.85362 0.88642 0.92776 0.84207 0.93400 0.85452 0.75515 0.90808 0.90530 0.94149 0.89090 0.89414 0.93827 0.92396 0.90712 0.91440 0.97027 0.96406 0.79834 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.00 71.24 0.71 -1.56 16 2 C 0.49 11.16 7.58 87.66 0.66 11.83 16 3 O -0.55 -18.86 12.15 21.65 0.26 -18.60 16 4 N -0.61 -10.35 3.02 -797.66 -2.41 -12.76 16 5 C 0.07 0.51 6.41 86.35 0.55 1.06 16 6 C 0.04 0.29 6.99 72.08 0.50 0.80 16 7 O -0.38 -4.96 10.74 -148.98 -1.60 -6.56 16 8 C 0.07 1.03 6.27 72.08 0.45 1.48 16 9 C 0.09 1.55 3.49 44.23 0.15 1.70 16 10 H 0.12 1.50 7.96 -2.39 -0.02 1.48 16 11 C 0.52 12.60 5.04 87.66 0.44 13.04 16 12 O -0.54 -18.37 13.30 21.62 0.29 -18.08 16 13 N -0.71 -14.15 4.53 -442.53 -2.00 -16.16 16 14 C 0.15 3.17 2.58 44.99 0.12 3.29 16 15 H 0.05 1.51 7.57 -2.39 -0.02 1.49 16 16 C -0.15 -2.66 9.48 71.98 0.68 -1.98 16 17 C -0.11 -2.12 4.75 30.60 0.15 -1.97 16 18 C -0.10 -2.59 5.10 30.59 0.16 -2.43 16 19 C -0.11 -3.36 5.33 30.59 0.16 -3.19 16 20 C 0.15 6.20 6.26 86.38 0.54 6.75 16 21 N -0.76 -37.49 5.41 -343.46 -1.86 -39.35 16 22 C -0.24 -14.68 10.47 84.03 0.88 -13.80 16 23 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 24 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 25 N -0.98 -64.70 13.97 21.65 0.30 -64.40 16 26 Si 0.96 46.12 27.74 68.60 1.90 48.03 16 27 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.25 -10.54 6.52 99.48 0.65 -9.89 16 30 H 0.11 0.63 5.40 -2.39 -0.01 0.62 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.13 0.28 5.43 -2.39 -0.01 0.27 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 38 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.41 5.77 8.47 -92.71 -0.79 4.98 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 45 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.06 1.49 7.75 -2.39 -0.02 1.47 16 47 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.37 16.87 5.53 -92.71 -0.51 16.36 16 52 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 Total: -1.00 -89.65 409.71 1.08 -88.57 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.44 Total: 27.90 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 6.63 Total: 11.40 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -5.97 Total: -132.66 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.05 Total: -43.24 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.90 Total: 48.03 kcal Total: -89.65 1.08 -88.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176677638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.892 kcal (2) G-P(sol) polarization free energy of solvation -89.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds