Wall clock time and date at job start Wed Apr 1 2020 01:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 O 1.21283 * 120.00261 * 120.00003 * 4 2 1 6 6 N 1.34777 * 120.00075 * 300.00543 * 4 2 1 7 7 C 1.46500 * 120.00084 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47249 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47577 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.47518 * 180.02562 * 9 8 7 11 11 C 1.46905 * 110.99890 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46643 * 179.97438 * 11 10 9 13 13 O 1.21294 * 120.00462 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99530 * 180.02562 * 12 11 10 15 15 C 1.37106 * 119.99605 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99928 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99352 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00744 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99547 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47165 * 59.99763 * 19 17 15 21 21 H 1.48495 * 109.47051 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47178 * 299.99953 * 19 17 15 23 23 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 24 24 C 1.53179 * 109.54301 * 179.55509 * 23 2 1 25 25 C 1.53087 * 109.16310 * 183.15144 * 24 23 2 26 26 O 1.42908 * 109.41694 * 57.60702 * 25 24 23 27 27 C 1.42900 * 114.09444 * 298.84608 * 26 25 24 28 28 C 1.53090 * 109.42127 * 61.15443 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96996 * 119.99636 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.47049 * 299.99628 * 7 6 4 34 34 H 1.09000 * 109.47381 * 59.99594 * 7 6 4 35 35 H 1.09001 * 109.46997 * 299.99913 * 8 7 6 36 36 H 1.08996 * 109.47134 * 59.99161 * 8 7 6 37 37 H 1.09001 * 109.46885 * 299.99981 * 9 8 7 38 38 H 1.08999 * 109.47330 * 59.98970 * 9 8 7 39 39 H 1.00895 * 111.00439 * 56.04407 * 10 9 8 40 40 H 1.08996 * 109.46923 * 299.99027 * 11 10 9 41 41 H 1.09001 * 109.47214 * 59.99773 * 11 10 9 42 42 H 0.97001 * 120.00247 * 359.97438 * 14 12 11 43 43 H 0.96998 * 120.00263 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.53779 * 299.81784 * 23 2 1 45 45 H 1.09001 * 109.52182 * 303.05456 * 24 23 2 46 46 H 1.09005 * 109.52402 * 63.24513 * 24 23 2 47 47 H 1.09005 * 109.48300 * 297.62321 * 25 24 23 48 48 H 1.08996 * 109.48696 * 177.59256 * 25 24 23 49 49 H 1.09000 * 109.47971 * 301.17107 * 27 26 25 50 50 H 1.08997 * 109.47915 * 181.14134 * 27 26 25 51 51 H 1.08990 * 109.52610 * 182.48302 * 28 27 26 52 52 H 1.09002 * 109.51732 * 62.29118 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6507 8 6 1.6860 -0.2190 4.8999 9 6 2.1971 -0.9394 6.1491 10 7 1.7072 -0.2472 7.3486 11 6 2.1788 -0.9130 8.5702 12 6 1.6580 -0.1758 9.7770 13 8 0.9628 0.8077 9.6336 14 7 1.9656 -0.6089 11.0157 15 6 1.4922 0.0620 12.1137 16 1 0.8732 0.9378 11.9859 17 6 1.8089 -0.3848 13.3907 18 7 2.5616 -1.4507 13.5461 19 14 1.1645 0.5298 14.8867 20 1 -0.3203 0.5306 14.8647 21 1 1.6405 -0.1438 16.1215 22 1 1.6607 1.9292 14.8629 23 6 2.0400 -0.7212 -1.2494 24 6 3.5717 -0.7124 -1.2566 25 6 4.0719 -1.3659 -2.5475 26 8 3.5364 -0.6661 -3.6726 27 6 2.1093 -0.6813 -3.7439 28 6 1.5302 -0.0003 -2.5011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.1493 0.5387 2.5435 33 1 1.8328 -1.9682 3.6508 34 1 3.2856 -0.9399 3.6505 35 1 2.0492 0.8088 4.8996 36 1 0.5961 -0.2190 4.9003 37 1 1.8342 -1.9673 6.1497 38 1 3.2870 -0.9391 6.1485 39 1 0.7007 -0.1779 7.3405 40 1 1.8158 -1.9406 8.5871 41 1 3.2687 -0.9123 8.5868 42 1 2.5219 -1.3953 11.1304 43 1 2.7830 -1.7623 14.4376 44 1 1.6799 -1.7500 -1.2489 45 1 3.9304 0.3157 -1.2062 46 1 3.9433 -1.2714 -0.3977 47 1 3.7469 -2.4059 -2.5781 48 1 5.1606 -1.3241 -2.5781 49 1 1.7586 -1.7123 -3.7901 50 1 1.7842 -0.1463 -4.6362 51 1 0.4419 -0.0500 -2.5322 52 1 1.8477 1.0421 -2.4757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177591199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:46 Heat of formation + Delta-G solvation = -143.287409 kcal Electronic energy + Delta-G solvation = -28734.817789 eV Core-core repulsion = 24540.216211 eV Total energy + Delta-G solvation = -4194.601578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78285 -39.26173 -38.33545 -36.70244 -35.65935 -34.94129 -33.86455 -32.11138 -31.46663 -31.24545 -30.70822 -27.22505 -26.08769 -25.05171 -24.08398 -23.47239 -22.61504 -21.76243 -20.68841 -20.10707 -19.22516 -17.90245 -17.42472 -16.82806 -16.45962 -16.32985 -16.17058 -15.88115 -15.61750 -15.11580 -14.88817 -14.64856 -14.52325 -14.35568 -14.18964 -13.95160 -13.62735 -13.51001 -13.42211 -13.02591 -12.75245 -12.50504 -12.23184 -12.08276 -12.03817 -11.86272 -11.80967 -11.66435 -11.48136 -11.44882 -11.28213 -11.11130 -11.02691 -10.94316 -10.63452 -10.45194 -10.22576 -10.03510 -9.72932 -9.51260 -9.34602 -8.49179 -8.09755 -7.97383 -6.42679 -3.83784 2.32056 2.81405 3.19278 3.25136 3.29431 3.51947 3.89341 4.05630 4.07750 4.18744 4.28610 4.29267 4.55680 4.61599 4.73218 4.77061 4.81579 4.87257 4.89605 4.97921 5.01742 5.09453 5.14419 5.15985 5.24577 5.29955 5.36214 5.37085 5.39496 5.41219 5.47207 5.49937 5.57972 5.59771 5.72114 5.76976 5.87215 5.94820 5.95905 5.97461 6.01604 6.17475 6.25210 6.83356 7.16356 7.16646 7.53839 7.61658 7.91245 8.04819 8.59987 9.16481 9.52945 10.04321 10.74924 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042742 B = 0.001258 C = 0.001234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.941285 B =22256.067964 C =22679.974091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 H 0.098 0.902 4 C 0.516 3.484 5 O -0.537 6.537 6 N -0.728 5.728 7 C 0.120 3.880 8 C -0.129 4.129 9 C 0.063 3.937 10 N -0.669 5.669 11 C 0.051 3.949 12 C 0.440 3.560 13 O -0.584 6.584 14 N -0.563 5.563 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.068 4.068 24 C -0.161 4.161 25 C 0.062 3.938 26 O -0.387 6.387 27 C 0.061 3.939 28 C -0.153 4.153 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.401 0.599 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.349 0.651 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.101 0.899 47 H 0.050 0.950 48 H 0.092 0.908 49 H 0.049 0.951 50 H 0.092 0.908 51 H 0.076 0.924 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 -0.646 -32.441 32.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 H 0.116 0.884 4 C 0.303 3.697 5 O -0.414 6.414 6 N -0.380 5.380 7 C -0.004 4.004 8 C -0.167 4.167 9 C -0.068 4.068 10 N -0.302 5.302 11 C -0.082 4.082 12 C 0.225 3.775 13 O -0.469 6.469 14 N -0.199 5.199 15 C -0.431 4.431 16 H 0.120 0.880 17 C -0.178 4.178 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.086 4.086 24 C -0.199 4.199 25 C -0.014 4.014 26 O -0.306 6.306 27 C -0.016 4.016 28 C -0.191 4.191 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.236 0.764 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.168 0.832 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.068 0.932 48 H 0.110 0.890 49 H 0.067 0.933 50 H 0.110 0.890 51 H 0.095 0.905 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.725 -0.248 -32.537 32.546 hybrid contribution -0.923 -0.624 1.311 1.720 sum -1.648 -0.872 -31.226 31.282 Atomic orbital electron populations 1.21842 0.92734 1.02940 1.02940 1.21376 0.97566 1.00902 0.92927 0.88394 1.20629 0.79943 0.84575 0.84569 1.90643 1.37730 1.26397 1.86606 1.46062 1.53891 1.32258 1.05798 1.21330 0.99593 0.96309 0.83167 1.21741 1.01381 1.00912 0.92693 1.21825 1.00686 0.94913 0.89343 1.60057 1.17429 1.52802 0.99891 1.21672 1.01047 0.95486 0.90008 1.19808 0.86044 0.87533 0.84078 1.90517 1.42151 1.28363 1.85841 1.41860 1.46045 1.27770 1.04271 1.19666 1.29281 1.10692 0.83449 0.87963 1.25260 0.96907 0.96566 0.99113 1.69601 1.36988 1.23502 1.24189 0.85916 0.79136 0.79309 0.79844 1.19922 1.20960 1.19866 1.20973 0.95864 0.99672 0.92135 1.22473 0.95250 1.02314 0.99828 1.22589 0.98818 0.94869 0.85174 1.87924 1.20205 1.76046 1.46403 1.22547 0.81293 0.99864 0.97863 1.22328 1.01075 1.00739 0.94948 0.91924 0.91961 0.91021 0.76445 0.91476 0.91238 0.90139 0.91289 0.95278 0.90779 0.83209 0.93818 0.89543 0.77433 0.91798 0.90371 0.91727 0.88116 0.93195 0.88963 0.93270 0.88967 0.90536 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.74 37.16 0.32 -0.33 16 2 C -0.11 -0.64 2.32 -91.77 -0.21 -0.85 16 3 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 4 C 0.52 4.56 6.88 -10.99 -0.08 4.48 16 5 O -0.54 -6.60 13.70 5.55 0.08 -6.53 16 6 N -0.73 -5.46 5.45 -60.30 -0.33 -5.79 16 7 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 8 C -0.13 -1.16 5.59 -26.74 -0.15 -1.31 16 9 C 0.06 0.71 5.68 -3.83 -0.02 0.69 16 10 N -0.67 -10.44 6.13 -115.06 -0.70 -11.15 16 11 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 12 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 13 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 14 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 15 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 16 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 17 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 18 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 19 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 C -0.07 -0.46 1.49 -90.43 -0.13 -0.59 16 24 C -0.16 -1.29 5.06 -26.59 -0.13 -1.43 16 25 C 0.06 0.48 6.84 37.20 0.25 0.74 16 26 O -0.39 -3.41 10.77 -35.23 -0.38 -3.79 16 27 C 0.06 0.38 6.84 37.20 0.25 0.63 16 28 C -0.15 -0.81 4.97 -26.60 -0.13 -0.94 16 29 H 0.06 0.23 7.56 -51.93 -0.39 -0.16 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.24 6.51 -51.93 -0.34 -0.10 16 32 H 0.40 2.11 7.89 -40.82 -0.32 1.79 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.35 5.56 8.43 -39.29 -0.33 5.22 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.10 1.00 5.65 -51.93 -0.29 0.71 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 0.29 6.62 -51.93 -0.34 -0.05 16 52 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 414.68 15.07 6.25 6.25 Total: -1.00 -33.50 414.68 -8.80 -42.31 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -9.04 Total: 11.34 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.41 Total: 5.22 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.37 Total: -55.01 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.22 Total: -26.05 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.50 -8.80 -42.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177591199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.981 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds