Wall clock time and date at job start Wed Apr 1 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 O 1.21283 * 120.00261 * 120.00003 * 4 2 1 6 6 N 1.34777 * 120.00075 * 300.00543 * 4 2 1 7 7 C 1.46500 * 120.00084 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47249 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47577 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.47518 * 180.02562 * 9 8 7 11 11 C 1.46905 * 110.99890 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46643 * 179.97438 * 11 10 9 13 13 O 1.21294 * 120.00462 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99530 * 180.02562 * 12 11 10 15 15 C 1.37106 * 119.99605 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99928 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99352 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00744 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99547 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47165 * 59.99763 * 19 17 15 21 21 H 1.48495 * 109.47051 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47178 * 299.99953 * 19 17 15 23 23 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 24 24 C 1.53179 * 109.54301 * 179.55509 * 23 2 1 25 25 C 1.53087 * 109.16310 * 183.15144 * 24 23 2 26 26 O 1.42908 * 109.41694 * 57.60702 * 25 24 23 27 27 C 1.42900 * 114.09444 * 298.84608 * 26 25 24 28 28 C 1.53090 * 109.42127 * 61.15443 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 0.96996 * 119.99636 * 359.97438 * 6 4 2 33 33 H 1.09001 * 109.47049 * 299.99628 * 7 6 4 34 34 H 1.09000 * 109.47381 * 59.99594 * 7 6 4 35 35 H 1.09001 * 109.46997 * 299.99913 * 8 7 6 36 36 H 1.08996 * 109.47134 * 59.99161 * 8 7 6 37 37 H 1.09001 * 109.46885 * 299.99981 * 9 8 7 38 38 H 1.08999 * 109.47330 * 59.98970 * 9 8 7 39 39 H 1.00895 * 111.00439 * 56.04407 * 10 9 8 40 40 H 1.08996 * 109.46923 * 299.99027 * 11 10 9 41 41 H 1.09001 * 109.47214 * 59.99773 * 11 10 9 42 42 H 0.97001 * 120.00247 * 359.97438 * 14 12 11 43 43 H 0.96998 * 120.00263 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.53779 * 299.81784 * 23 2 1 45 45 H 1.09001 * 109.52182 * 303.05456 * 24 23 2 46 46 H 1.09005 * 109.52402 * 63.24513 * 24 23 2 47 47 H 1.09005 * 109.48300 * 297.62321 * 25 24 23 48 48 H 1.08996 * 109.48696 * 177.59256 * 25 24 23 49 49 H 1.09000 * 109.47971 * 301.17107 * 27 26 25 50 50 H 1.08997 * 109.47915 * 181.14134 * 27 26 25 51 51 H 1.08990 * 109.52610 * 182.48302 * 28 27 26 52 52 H 1.09002 * 109.51732 * 62.29118 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6507 8 6 1.6860 -0.2190 4.8999 9 6 2.1971 -0.9394 6.1491 10 7 1.7072 -0.2472 7.3486 11 6 2.1788 -0.9130 8.5702 12 6 1.6580 -0.1758 9.7770 13 8 0.9628 0.8077 9.6336 14 7 1.9656 -0.6089 11.0157 15 6 1.4922 0.0620 12.1137 16 1 0.8732 0.9378 11.9859 17 6 1.8089 -0.3848 13.3907 18 7 2.5616 -1.4507 13.5461 19 14 1.1645 0.5298 14.8867 20 1 -0.3203 0.5306 14.8647 21 1 1.6405 -0.1438 16.1215 22 1 1.6607 1.9292 14.8629 23 6 2.0400 -0.7212 -1.2494 24 6 3.5717 -0.7124 -1.2566 25 6 4.0719 -1.3659 -2.5475 26 8 3.5364 -0.6661 -3.6726 27 6 2.1093 -0.6813 -3.7439 28 6 1.5302 -0.0003 -2.5011 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.1493 0.5387 2.5435 33 1 1.8328 -1.9682 3.6508 34 1 3.2856 -0.9399 3.6505 35 1 2.0492 0.8088 4.8996 36 1 0.5961 -0.2190 4.9003 37 1 1.8342 -1.9673 6.1497 38 1 3.2870 -0.9391 6.1485 39 1 0.7007 -0.1779 7.3405 40 1 1.8158 -1.9406 8.5871 41 1 3.2687 -0.9123 8.5868 42 1 2.5219 -1.3953 11.1304 43 1 2.7830 -1.7623 14.4376 44 1 1.6799 -1.7500 -1.2489 45 1 3.9304 0.3157 -1.2062 46 1 3.9433 -1.2714 -0.3977 47 1 3.7469 -2.4059 -2.5781 48 1 5.1606 -1.3241 -2.5781 49 1 1.7586 -1.7123 -3.7901 50 1 1.7842 -0.1463 -4.6362 51 1 0.4419 -0.0500 -2.5322 52 1 1.8477 1.0421 -2.4757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177591199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:45 Heat of formation + Delta-G solvation = -169.057366 kcal Electronic energy + Delta-G solvation = -28735.935258 eV Core-core repulsion = 24540.216211 eV Total energy + Delta-G solvation = -4195.719047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41143 -40.16916 -39.86942 -37.70147 -36.33670 -36.05753 -35.64617 -33.31028 -32.82798 -32.02082 -31.43657 -28.57853 -26.73199 -26.39501 -25.01360 -24.32536 -23.36099 -22.58796 -21.29554 -21.08163 -20.66481 -19.90131 -18.07670 -17.85975 -17.36140 -17.25206 -16.91189 -16.79663 -16.62457 -16.42686 -16.01845 -15.87572 -15.52405 -15.36070 -15.09679 -14.98440 -14.69260 -14.49699 -14.27361 -14.05523 -13.57350 -13.43134 -13.30451 -13.18239 -13.03293 -12.85728 -12.70881 -12.62931 -12.48889 -12.42927 -12.37984 -12.22236 -12.12064 -11.86300 -11.79301 -11.57468 -11.50166 -11.16892 -10.65742 -10.38307 -10.33629 -10.05034 -10.02235 -9.34603 -8.46748 -5.95922 1.40142 1.42199 1.53177 1.65059 2.04594 2.16080 2.30100 2.94502 2.98581 3.20525 3.51859 3.56437 3.67625 3.78402 3.99818 4.04969 4.10913 4.15104 4.19700 4.24476 4.32646 4.34975 4.41539 4.42958 4.47923 4.56242 4.58166 4.62758 4.69481 4.71795 4.78889 4.80851 4.88544 4.95256 4.96869 5.02419 5.12218 5.14769 5.19425 5.26095 5.35981 5.40423 5.42865 5.51465 5.87679 6.08913 6.27973 6.40340 6.56635 6.59531 7.11907 7.27449 7.55566 8.10563 8.70340 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042742 B = 0.001258 C = 0.001234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.941285 B =22256.067964 C =22679.974091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.114 0.886 4 C 0.511 3.489 5 O -0.576 6.576 6 N -0.720 5.720 7 C 0.127 3.873 8 C -0.115 4.115 9 C 0.063 3.937 10 N -0.683 5.683 11 C 0.064 3.936 12 C 0.436 3.564 13 O -0.623 6.623 14 N -0.573 5.573 15 C -0.337 4.337 16 H 0.080 0.920 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.067 4.067 24 C -0.158 4.158 25 C 0.062 3.938 26 O -0.406 6.406 27 C 0.052 3.948 28 C -0.145 4.145 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.414 0.586 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.345 0.655 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.096 0.904 49 H 0.051 0.949 50 H 0.108 0.892 51 H 0.097 0.903 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -0.110 -33.185 33.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 H 0.132 0.868 4 C 0.299 3.701 5 O -0.456 6.456 6 N -0.372 5.372 7 C 0.003 3.997 8 C -0.153 4.153 9 C -0.067 4.067 10 N -0.316 5.316 11 C -0.068 4.068 12 C 0.224 3.776 13 O -0.510 6.510 14 N -0.210 5.210 15 C -0.467 4.467 16 H 0.098 0.902 17 C -0.211 4.211 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.197 1.197 23 C -0.086 4.086 24 C -0.195 4.195 25 C -0.015 4.015 26 O -0.325 6.325 27 C -0.024 4.024 28 C -0.183 4.183 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.164 0.836 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.114 0.886 49 H 0.069 0.931 50 H 0.126 0.874 51 H 0.115 0.885 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.535 0.286 -33.295 33.331 hybrid contribution -0.655 -0.811 1.478 1.809 sum -2.190 -0.525 -31.816 31.896 Atomic orbital electron populations 1.21856 0.91102 1.02785 1.04407 1.21381 0.98749 1.00983 0.90946 0.86834 1.21186 0.79245 0.84160 0.85523 1.90635 1.39536 1.28275 1.87182 1.45985 1.53607 1.32434 1.05176 1.21152 0.98999 0.96064 0.83510 1.21581 1.01786 1.00362 0.91576 1.21906 1.00911 0.95432 0.88418 1.60057 1.17310 1.53763 1.00424 1.21534 1.01716 0.95587 0.87993 1.20887 0.84622 0.87004 0.85096 1.90483 1.43674 1.30215 1.86610 1.41936 1.46486 1.27964 1.04597 1.19660 1.30705 1.11160 0.85141 0.90227 1.26042 0.96669 0.97189 1.01242 1.69663 1.37159 1.24129 1.25143 0.84987 0.78574 0.78120 0.76648 1.19611 1.19507 1.19711 1.20950 0.94872 0.99287 0.93462 1.22385 0.96398 1.01780 0.98945 1.22592 0.99138 0.94706 0.85064 1.87894 1.21849 1.76191 1.46601 1.22771 0.80073 1.00488 0.99055 1.22287 1.02176 1.00384 0.93434 0.90801 0.92907 0.89263 0.74921 0.92147 0.92185 0.90337 0.90404 0.94148 0.90427 0.83587 0.91551 0.87898 0.76973 0.91276 0.91882 0.91763 0.90285 0.93405 0.88623 0.93070 0.87392 0.88494 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.74 71.98 0.63 -0.30 16 2 C -0.10 -1.05 2.32 -11.54 -0.03 -1.07 16 3 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 4 C 0.51 8.67 6.88 87.66 0.60 9.27 16 5 O -0.58 -14.43 13.70 -3.04 -0.04 -14.47 16 6 N -0.72 -9.83 5.45 -463.07 -2.52 -12.35 16 7 C 0.13 2.07 5.67 86.38 0.49 2.56 16 8 C -0.11 -1.87 5.59 30.59 0.17 -1.70 16 9 C 0.06 1.31 5.68 86.30 0.49 1.80 16 10 N -0.68 -20.39 6.13 -517.94 -3.17 -23.56 16 11 C 0.06 2.15 6.17 85.56 0.53 2.68 16 12 C 0.44 20.63 7.82 87.66 0.69 21.32 16 13 O -0.62 -34.25 15.78 -3.07 -0.05 -34.30 16 14 N -0.57 -29.33 5.29 -306.97 -1.62 -30.96 16 15 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 16 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 17 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 18 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 19 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C -0.07 -0.85 1.49 -10.67 -0.02 -0.87 16 24 C -0.16 -2.55 5.06 30.68 0.16 -2.39 16 25 C 0.06 0.98 6.84 72.01 0.49 1.47 16 26 O -0.41 -6.95 10.77 -148.98 -1.60 -8.56 16 27 C 0.05 0.58 6.84 72.01 0.49 1.07 16 28 C -0.15 -1.26 4.97 30.68 0.15 -1.11 16 29 H 0.07 0.33 7.56 -2.39 -0.02 0.31 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.09 0.29 6.51 -2.38 -0.02 0.27 16 32 H 0.41 3.48 7.89 -92.71 -0.73 2.75 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.35 10.66 8.43 -89.70 -0.76 9.90 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 43 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 1.66 5.65 -2.38 -0.01 1.64 16 47 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.10 0.46 6.62 -2.39 -0.02 0.44 16 52 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -73.26 414.68 -1.86 -75.12 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -1.28 Total: 39.38 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.13 Total: 14.28 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -7.04 Total: -116.13 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -1.69 Total: -57.33 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.26 -1.86 -75.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177591199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.935 kcal (2) G-P(sol) polarization free energy of solvation -73.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds