Wall clock time and date at job start Wed Apr 1 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00074 * 2 1 4 4 C 1.53003 * 109.46811 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47012 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47423 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47228 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99955 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99777 * 179.97438 * 7 6 5 10 10 C 1.47422 * 125.65155 * 359.69117 * 9 7 6 11 11 C 1.54680 * 104.94294 * 204.07365 * 10 9 7 12 12 C 1.55155 * 101.67928 * 323.27719 * 11 10 9 13 13 H 1.08999 * 110.87423 * 276.90408 * 12 11 10 14 14 N 1.46898 * 110.72116 * 153.69731 * 12 11 10 15 15 C 1.46905 * 110.99957 * 84.98825 * 14 12 11 16 16 C 1.50703 * 109.46975 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00445 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99606 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99775 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00337 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99745 * 180.02562 * 19 18 16 22 22 N 1.31419 * 120.00011 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00430 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47186 * 90.00184 * 23 21 19 25 25 H 1.48503 * 109.47574 * 210.00280 * 23 21 19 26 26 H 1.48501 * 109.47148 * 330.00487 * 23 21 19 27 27 C 1.47020 * 125.64563 * 180.02562 * 9 7 6 28 28 H 1.09005 * 109.88354 * 298.32354 * 27 9 7 29 29 C 1.53000 * 109.88318 * 59.48546 * 27 9 7 30 30 H 1.08996 * 109.46971 * 299.99568 * 1 2 3 31 31 H 1.08994 * 109.46755 * 60.00089 * 1 2 3 32 32 H 1.09000 * 109.46836 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46964 * 60.00005 * 3 2 1 34 34 H 1.09002 * 109.47185 * 299.99681 * 3 2 1 35 35 H 1.09001 * 109.47296 * 299.99432 * 4 3 2 36 36 H 1.08993 * 109.47490 * 60.00159 * 4 3 2 37 37 H 1.08999 * 109.46813 * 300.00270 * 5 4 3 38 38 H 1.09003 * 109.46964 * 59.99676 * 5 4 3 39 39 H 1.09000 * 109.46924 * 300.00246 * 6 5 4 40 40 H 1.09003 * 109.47290 * 59.99907 * 6 5 4 41 41 H 1.09000 * 110.36827 * 323.00924 * 10 9 7 42 42 H 1.09000 * 110.36180 * 85.32521 * 10 9 7 43 43 H 1.09000 * 111.10306 * 205.11128 * 11 10 9 44 44 H 1.09002 * 110.85082 * 81.34023 * 11 10 9 45 45 H 1.00903 * 111.00244 * 208.94125 * 14 12 11 46 46 H 1.09004 * 109.46892 * 299.99796 * 15 14 12 47 47 H 1.08991 * 109.47298 * 59.99797 * 15 14 12 48 48 H 0.97007 * 120.00379 * 359.97438 * 18 16 15 49 49 H 0.97000 * 120.00245 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.47047 * 66.03569 * 29 27 9 51 51 H 1.09003 * 109.47210 * 186.03335 * 29 27 9 52 52 H 1.08995 * 109.47393 * 306.03214 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5823 0.0000 6 6 5.6831 2.4615 0.0000 7 6 6.2960 3.8382 0.0000 8 8 5.5832 4.8193 0.0005 9 7 7.6365 3.9790 0.0005 10 6 8.6162 2.8774 0.0076 11 6 9.9002 3.4895 0.6151 12 6 9.8709 4.9260 0.0294 13 1 10.2889 4.9437 -0.9771 14 7 10.5910 5.8594 0.9058 15 6 12.0309 5.8503 0.6147 16 6 12.7349 6.8172 1.5316 17 8 12.0997 7.4517 2.3470 18 7 14.0704 6.9767 1.4455 19 6 14.7108 7.8566 2.2792 20 1 14.1451 8.4223 3.0048 21 6 16.0876 8.0214 2.1901 22 7 16.7016 8.8645 2.9896 23 14 17.0661 7.0436 0.9348 24 1 17.1423 7.8068 -0.3369 25 1 18.4376 6.8059 1.4523 26 1 16.3963 5.7409 0.6909 27 6 8.3637 5.2567 0.0011 28 1 8.1248 5.8197 -0.9012 29 6 7.9858 6.0700 1.2407 30 1 -0.3633 0.5137 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6435 0.8892 36 1 3.8568 0.6438 -0.8908 37 1 3.8359 3.1237 -0.8895 38 1 3.8365 3.1226 0.8904 39 1 6.0046 1.9201 0.8897 40 1 6.0048 1.9209 -0.8902 41 1 8.2578 2.0549 0.6266 42 1 8.8069 2.5330 -1.0088 43 1 10.7873 2.9503 0.2827 44 1 9.8430 3.5100 1.7034 45 1 10.2127 6.7917 0.8299 46 1 12.4270 4.8470 0.7719 47 1 12.1940 6.1471 -0.4213 48 1 14.5785 6.4689 0.7936 49 1 17.6628 8.9793 2.9277 50 1 8.3421 5.5573 2.1342 51 1 8.4441 7.0572 1.1812 52 1 6.9020 6.1750 1.2899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178316136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:28 Heat of formation + Delta-G solvation = -116.433621 kcal Electronic energy + Delta-G solvation = -29289.814109 eV Core-core repulsion = 25096.376998 eV Total energy + Delta-G solvation = -4193.437110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.58630 -38.75855 -38.41151 -37.90237 -35.11898 -34.87217 -33.87651 -31.75422 -31.51800 -31.02796 -29.81313 -27.11348 -26.74628 -25.35825 -24.53634 -23.62464 -22.94089 -21.59846 -20.03951 -19.45137 -19.14504 -18.40367 -17.35701 -16.85361 -16.74811 -16.36173 -16.14149 -15.89669 -15.57080 -15.44565 -15.10415 -14.87728 -14.54640 -14.05676 -13.84990 -13.61345 -13.37910 -13.21608 -13.04405 -12.88314 -12.65535 -12.48499 -12.32936 -12.11597 -12.07820 -11.98362 -11.91441 -11.83126 -11.62014 -11.52052 -11.36344 -11.22154 -11.07690 -10.97250 -10.72323 -10.61676 -10.12481 -9.99556 -9.90337 -9.59290 -8.86936 -8.62188 -8.25471 -8.18790 -6.32755 -3.84387 2.44602 2.67014 3.00382 3.04592 3.13326 3.29762 3.71623 4.00143 4.08527 4.11027 4.39559 4.43720 4.47672 4.52791 4.75935 4.79273 4.80852 4.89839 4.90268 4.92979 4.96800 4.98100 5.15592 5.16504 5.18180 5.22864 5.28294 5.30357 5.33409 5.43284 5.45672 5.49042 5.58060 5.63230 5.74675 5.79239 5.81102 5.88332 5.92445 6.02088 6.08563 6.24939 6.47135 6.69208 7.03058 7.31088 7.48345 7.56227 7.97958 8.12669 8.57701 8.93234 9.40458 9.80402 10.80366 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038328 B = 0.001512 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.357153 B =18517.135020 C =18887.520600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.134 4.134 7 C 0.528 3.472 8 O -0.539 6.539 9 N -0.613 5.613 10 C 0.098 3.902 11 C -0.124 4.124 12 C 0.076 3.924 13 H 0.058 0.942 14 N -0.654 5.654 15 C 0.047 3.953 16 C 0.450 3.550 17 O -0.564 6.564 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.137 3.863 28 H 0.072 0.928 29 C -0.156 4.156 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.355 0.645 46 H 0.088 0.912 47 H 0.045 0.955 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.069 0.931 51 H 0.068 0.932 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.783 -19.553 -11.227 32.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.140 4.140 6 C -0.174 4.174 7 C 0.317 3.683 8 O -0.416 6.416 9 N -0.348 5.348 10 C -0.025 4.025 11 C -0.163 4.163 12 C -0.035 4.035 13 H 0.076 0.924 14 N -0.289 5.289 15 C -0.086 4.086 16 C 0.235 3.765 17 O -0.445 6.445 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C 0.033 3.967 28 H 0.090 0.910 29 C -0.214 4.214 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.178 0.822 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.317 -19.079 -10.080 32.510 hybrid contribution 1.010 -0.070 -1.822 2.084 sum -23.307 -19.149 -11.901 32.427 Atomic orbital electron populations 1.22741 0.80945 1.02768 1.00062 1.87859 1.19808 1.28282 1.95464 1.22562 0.94166 0.84504 1.00455 1.21527 0.93089 0.97529 1.03462 1.21243 0.92778 0.96012 1.03964 1.21631 0.96732 0.94551 1.04508 1.20351 0.80291 0.91748 0.75890 1.90700 1.60064 1.40921 1.49894 1.48567 1.04976 1.07899 1.73379 1.22337 0.89018 0.90185 1.00942 1.22838 0.96343 0.94630 1.02438 1.22562 0.92083 0.93942 0.94888 0.92448 1.60295 1.01518 1.13386 1.53735 1.21760 0.89181 1.00454 0.97185 1.19675 0.82636 0.86649 0.87519 1.90575 1.65223 1.49565 1.39163 1.42201 1.06461 1.39536 1.34762 1.19437 0.91194 1.17677 1.15130 0.86269 1.25037 0.96364 0.97147 0.97556 1.69624 1.10121 1.34979 1.37371 0.86672 0.80735 0.80131 0.81830 1.19677 1.20165 1.19493 1.21595 0.90363 0.85139 0.99590 0.90971 1.21985 1.02025 1.00014 0.97349 0.94009 0.94058 0.89619 0.93118 0.93190 0.90934 0.91001 0.90951 0.90851 0.88744 0.88887 0.90341 0.91284 0.89960 0.89120 0.82218 0.89429 0.93660 0.79710 0.91601 0.91219 0.91366 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.40 -3.28 10.70 -35.23 -0.38 -3.65 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.12 -0.74 5.58 -26.73 -0.15 -0.88 16 5 C -0.10 -0.73 4.50 -26.73 -0.12 -0.85 16 6 C -0.13 -0.92 4.71 -27.89 -0.13 -1.05 16 7 C 0.53 5.68 7.62 -10.98 -0.08 5.60 16 8 O -0.54 -7.78 14.79 5.56 0.08 -7.70 16 9 N -0.61 -6.12 3.08 -163.16 -0.50 -6.62 16 10 C 0.10 0.71 6.68 -2.65 -0.02 0.69 16 11 C -0.12 -1.11 6.63 -24.71 -0.16 -1.27 16 12 C 0.08 0.82 3.11 -65.88 -0.20 0.62 16 13 H 0.06 0.56 7.92 -51.93 -0.41 0.15 16 14 N -0.65 -9.36 5.12 -106.05 -0.54 -9.90 16 15 C 0.05 0.72 6.02 -4.97 -0.03 0.69 16 16 C 0.45 9.88 7.82 -10.98 -0.09 9.79 16 17 O -0.56 -14.81 15.78 5.55 0.09 -14.72 16 18 N -0.59 -13.73 5.09 -10.96 -0.06 -13.78 16 19 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 20 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 21 C 0.04 1.14 5.50 -17.46 -0.10 1.04 16 22 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 23 Si 0.88 19.05 27.74 -169.99 -4.71 14.33 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.28 6.52 56.52 0.37 -4.91 16 27 C 0.14 1.55 3.41 -66.95 -0.23 1.32 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 C -0.16 -2.03 8.30 37.16 0.31 -1.72 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.09 0.52 7.84 -51.93 -0.41 0.12 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.43 7.48 -51.93 -0.39 0.04 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.36 5.43 6.41 -39.29 -0.25 5.18 16 46 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 47 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 48 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 49 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 51 H 0.07 0.90 6.72 -51.93 -0.35 0.55 16 52 H 0.06 0.93 6.53 -51.93 -0.34 0.59 16 LS Contribution 416.45 15.07 6.28 6.28 Total: -1.00 -34.71 416.45 -7.90 -42.62 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -9.11 Total: 10.76 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 0.18 Total: 7.18 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.33 Total: -55.10 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.21 Total: -26.07 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.71 -7.90 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178316136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.816 kcal (2) G-P(sol) polarization free energy of solvation -34.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds