Wall clock time and date at job start Wed Apr 1 2020 01:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00074 * 2 1 4 4 C 1.53003 * 109.46811 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47012 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47423 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47228 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99955 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99777 * 179.97438 * 7 6 5 10 10 C 1.47422 * 125.65155 * 359.69117 * 9 7 6 11 11 C 1.54680 * 104.94294 * 204.07365 * 10 9 7 12 12 C 1.55155 * 101.67928 * 323.27719 * 11 10 9 13 13 H 1.08999 * 110.87423 * 276.90408 * 12 11 10 14 14 N 1.46898 * 110.72116 * 153.69731 * 12 11 10 15 15 C 1.46905 * 110.99957 * 84.98825 * 14 12 11 16 16 C 1.50703 * 109.46975 * 180.02562 * 15 14 12 17 17 O 1.21291 * 120.00445 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99606 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99775 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00337 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99745 * 180.02562 * 19 18 16 22 22 N 1.31419 * 120.00011 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00430 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47186 * 90.00184 * 23 21 19 25 25 H 1.48503 * 109.47574 * 210.00280 * 23 21 19 26 26 H 1.48501 * 109.47148 * 330.00487 * 23 21 19 27 27 C 1.47020 * 125.64563 * 180.02562 * 9 7 6 28 28 H 1.09005 * 109.88354 * 298.32354 * 27 9 7 29 29 C 1.53000 * 109.88318 * 59.48546 * 27 9 7 30 30 H 1.08996 * 109.46971 * 299.99568 * 1 2 3 31 31 H 1.08994 * 109.46755 * 60.00089 * 1 2 3 32 32 H 1.09000 * 109.46836 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46964 * 60.00005 * 3 2 1 34 34 H 1.09002 * 109.47185 * 299.99681 * 3 2 1 35 35 H 1.09001 * 109.47296 * 299.99432 * 4 3 2 36 36 H 1.08993 * 109.47490 * 60.00159 * 4 3 2 37 37 H 1.08999 * 109.46813 * 300.00270 * 5 4 3 38 38 H 1.09003 * 109.46964 * 59.99676 * 5 4 3 39 39 H 1.09000 * 109.46924 * 300.00246 * 6 5 4 40 40 H 1.09003 * 109.47290 * 59.99907 * 6 5 4 41 41 H 1.09000 * 110.36827 * 323.00924 * 10 9 7 42 42 H 1.09000 * 110.36180 * 85.32521 * 10 9 7 43 43 H 1.09000 * 111.10306 * 205.11128 * 11 10 9 44 44 H 1.09002 * 110.85082 * 81.34023 * 11 10 9 45 45 H 1.00903 * 111.00244 * 208.94125 * 14 12 11 46 46 H 1.09004 * 109.46892 * 299.99796 * 15 14 12 47 47 H 1.08991 * 109.47298 * 59.99797 * 15 14 12 48 48 H 0.97007 * 120.00379 * 359.97438 * 18 16 15 49 49 H 0.97000 * 120.00245 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.47047 * 66.03569 * 29 27 9 51 51 H 1.09003 * 109.47210 * 186.03335 * 29 27 9 52 52 H 1.08995 * 109.47393 * 306.03214 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5823 0.0000 6 6 5.6831 2.4615 0.0000 7 6 6.2960 3.8382 0.0000 8 8 5.5832 4.8193 0.0005 9 7 7.6365 3.9790 0.0005 10 6 8.6162 2.8774 0.0076 11 6 9.9002 3.4895 0.6151 12 6 9.8709 4.9260 0.0294 13 1 10.2889 4.9437 -0.9771 14 7 10.5910 5.8594 0.9058 15 6 12.0309 5.8503 0.6147 16 6 12.7349 6.8172 1.5316 17 8 12.0997 7.4517 2.3470 18 7 14.0704 6.9767 1.4455 19 6 14.7108 7.8566 2.2792 20 1 14.1451 8.4223 3.0048 21 6 16.0876 8.0214 2.1901 22 7 16.7016 8.8645 2.9896 23 14 17.0661 7.0436 0.9348 24 1 17.1423 7.8068 -0.3369 25 1 18.4376 6.8059 1.4523 26 1 16.3963 5.7409 0.6909 27 6 8.3637 5.2567 0.0011 28 1 8.1248 5.8197 -0.9012 29 6 7.9858 6.0700 1.2407 30 1 -0.3633 0.5137 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6435 0.8892 36 1 3.8568 0.6438 -0.8908 37 1 3.8359 3.1237 -0.8895 38 1 3.8365 3.1226 0.8904 39 1 6.0046 1.9201 0.8897 40 1 6.0048 1.9209 -0.8902 41 1 8.2578 2.0549 0.6266 42 1 8.8069 2.5330 -1.0088 43 1 10.7873 2.9503 0.2827 44 1 9.8430 3.5100 1.7034 45 1 10.2127 6.7917 0.8299 46 1 12.4270 4.8470 0.7719 47 1 12.1940 6.1471 -0.4213 48 1 14.5785 6.4689 0.7936 49 1 17.6628 8.9793 2.9277 50 1 8.3421 5.5573 2.1342 51 1 8.4441 7.0572 1.1812 52 1 6.9020 6.1750 1.2899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178316136.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:23 Heat of formation + Delta-G solvation = -143.176197 kcal Electronic energy + Delta-G solvation = -29290.973754 eV Core-core repulsion = 25096.376998 eV Total energy + Delta-G solvation = -4194.596755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.40617 -40.27412 -39.16175 -38.80781 -36.21365 -35.70673 -35.57167 -33.73639 -32.47980 -31.83409 -30.49724 -28.35336 -27.40921 -26.48515 -25.50146 -24.83959 -23.62753 -22.14966 -21.28366 -20.84191 -20.31112 -19.92698 -18.17811 -17.72203 -17.41551 -17.27403 -17.08363 -16.94370 -16.62558 -16.52555 -16.22094 -15.76372 -15.62310 -15.19371 -15.03820 -14.64881 -14.57871 -14.39809 -14.23741 -13.84892 -13.67524 -13.45590 -13.37354 -13.30142 -13.10682 -12.91837 -12.71813 -12.60430 -12.42411 -12.39715 -12.36957 -12.27409 -11.96018 -11.88583 -11.81784 -11.60512 -11.58400 -11.49414 -10.77718 -10.62983 -10.41024 -10.23362 -9.66381 -9.33690 -8.39824 -6.01046 1.31683 1.37469 1.46587 1.66321 1.92605 1.98543 2.24915 2.74411 2.82822 3.17050 3.33735 3.42441 3.70742 3.78901 3.96054 3.97207 4.06727 4.17115 4.28728 4.30536 4.34330 4.34755 4.41306 4.46090 4.48852 4.52202 4.53896 4.60157 4.65289 4.68965 4.71424 4.75970 4.81353 4.85751 4.87959 4.99378 5.04012 5.08545 5.28235 5.30210 5.32535 5.38838 5.45194 5.54533 5.92210 6.06940 6.21586 6.31993 6.57724 6.61589 6.90058 7.19400 7.41829 7.99187 8.77994 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038328 B = 0.001512 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.357153 B =18517.135020 C =18887.520600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.097 4.097 6 C -0.125 4.125 7 C 0.519 3.481 8 O -0.587 6.587 9 N -0.614 5.614 10 C 0.099 3.901 11 C -0.121 4.121 12 C 0.081 3.919 13 H 0.082 0.918 14 N -0.674 5.674 15 C 0.063 3.937 16 C 0.448 3.552 17 O -0.616 6.616 18 N -0.590 5.590 19 C -0.330 4.330 20 H 0.053 0.947 21 C -0.015 4.015 22 N -0.937 5.937 23 Si 0.966 3.034 24 H -0.258 1.258 25 H -0.277 1.277 26 H -0.227 1.227 27 C 0.136 3.864 28 H 0.067 0.933 29 C -0.145 4.145 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.345 0.655 46 H 0.119 0.881 47 H 0.080 0.920 48 H 0.391 0.609 49 H 0.279 0.721 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.073 -23.779 -14.478 36.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.022 4.022 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.165 4.165 7 C 0.310 3.690 8 O -0.467 6.467 9 N -0.348 5.348 10 C -0.022 4.022 11 C -0.160 4.160 12 C -0.030 4.030 13 H 0.100 0.900 14 N -0.308 5.308 15 C -0.069 4.069 16 C 0.236 3.764 17 O -0.500 6.500 18 N -0.232 5.232 19 C -0.459 4.459 20 H 0.071 0.929 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.150 1.150 27 C 0.032 3.968 28 H 0.085 0.915 29 C -0.204 4.204 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.166 0.834 46 H 0.137 0.863 47 H 0.098 0.902 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -23.616 -23.361 -13.348 35.799 hybrid contribution 0.650 1.346 -0.700 1.651 sum -22.966 -22.014 -14.048 34.776 Atomic orbital electron populations 1.22912 0.79733 1.03791 1.00702 1.87816 1.21297 1.28946 1.95596 1.22639 0.94699 0.84208 1.00605 1.21438 0.92537 0.96724 1.03993 1.21154 0.93417 0.96307 1.02605 1.21662 0.95850 0.92279 1.06668 1.21117 0.80286 0.92746 0.74841 1.90682 1.61200 1.42765 1.52089 1.48673 1.05281 1.08177 1.72650 1.22579 0.87234 0.89515 1.02911 1.22859 0.98394 0.93520 1.01210 1.22642 0.90753 0.94007 0.95549 0.90039 1.60303 1.01318 1.13502 1.55665 1.21679 0.88985 0.99591 0.96657 1.21042 0.82127 0.86191 0.87071 1.90558 1.66326 1.51619 1.41518 1.42011 1.07127 1.39324 1.34749 1.19009 0.91816 1.19297 1.15791 0.92893 1.26139 0.97068 0.98118 1.00056 1.69816 1.10854 1.37144 1.39909 0.85351 0.78188 0.79842 0.78034 1.18227 1.20210 1.15021 1.21494 0.91410 0.85872 0.98011 0.91470 1.21841 1.00558 0.99926 0.98058 0.93477 0.93331 0.88483 0.93191 0.92916 0.90548 0.90177 0.92106 0.92578 0.86760 0.86160 0.88075 0.88528 0.87471 0.91268 0.83413 0.86285 0.90220 0.77374 0.91195 0.92625 0.92310 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.47 10.70 -148.98 -1.59 -8.06 16 3 C 0.05 0.70 5.94 71.98 0.43 1.13 16 4 C -0.11 -1.17 5.58 30.60 0.17 -1.00 16 5 C -0.10 -1.28 4.50 30.59 0.14 -1.14 16 6 C -0.13 -1.39 4.71 29.85 0.14 -1.25 16 7 C 0.52 10.53 7.62 87.66 0.67 11.19 16 8 O -0.59 -17.31 14.79 -3.02 -0.04 -17.36 16 9 N -0.61 -10.93 3.08 -788.51 -2.43 -13.36 16 10 C 0.10 0.99 6.68 86.78 0.58 1.57 16 11 C -0.12 -1.69 6.63 31.91 0.21 -1.47 16 12 C 0.08 1.49 3.11 46.10 0.14 1.63 16 13 H 0.08 1.19 7.92 -2.39 -0.02 1.17 16 14 N -0.67 -18.20 5.12 -489.45 -2.51 -20.71 16 15 C 0.06 1.73 6.02 85.56 0.52 2.25 16 16 C 0.45 19.50 7.82 87.66 0.69 20.19 16 17 O -0.62 -33.73 15.78 -3.06 -0.05 -33.77 16 18 N -0.59 -27.02 5.09 -306.98 -1.56 -28.58 16 19 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 20 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 21 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 22 N -0.94 -56.33 13.96 21.66 0.30 -56.03 16 23 Si 0.97 37.84 27.74 68.60 1.90 39.74 16 24 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 25 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.23 -7.29 6.52 99.48 0.65 -6.64 16 27 C 0.14 2.94 3.41 45.34 0.15 3.09 16 28 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 29 C -0.15 -3.96 8.30 71.98 0.60 -3.36 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.94 8.10 -2.39 -0.02 0.93 16 38 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 39 H 0.11 0.86 7.84 -2.39 -0.02 0.84 16 40 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 0.60 7.48 -2.39 -0.02 0.59 16 42 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.34 10.56 6.41 -89.69 -0.58 9.99 16 46 H 0.12 2.62 8.08 -2.39 -0.02 2.60 16 47 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 48 H 0.39 14.50 5.76 -92.70 -0.53 13.97 16 49 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 50 H 0.05 1.63 8.05 -2.39 -0.02 1.61 16 51 H 0.06 1.66 6.72 -2.39 -0.02 1.65 16 52 H 0.05 1.44 6.53 -2.39 -0.02 1.43 16 Total: -1.00 -84.26 416.45 0.76 -83.50 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -0.26 Total: 39.01 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 7.00 Total: 15.63 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -6.20 Total: -118.68 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -1.69 Total: -59.19 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Total: -84.26 0.76 -83.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178316136.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.680 kcal (2) G-P(sol) polarization free energy of solvation -84.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds