Wall clock time and date at job start Wed Apr 1 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.00109 * 2 1 4 4 C 1.54325 * 109.88559 * 121.09948 * 2 1 3 5 5 H 1.08993 * 110.72062 * 215.76152 * 4 2 1 6 6 N 1.46910 * 110.71590 * 338.85857 * 4 2 1 7 7 C 1.46902 * 110.99706 * 198.18594 * 6 4 2 8 8 C 1.50696 * 109.46972 * 180.02562 * 7 6 4 9 9 O 1.21301 * 120.00050 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00074 * 179.97438 * 8 7 6 11 11 C 1.37100 * 120.00146 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99833 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99983 * 180.02562 * 11 10 8 14 14 N 1.31409 * 119.99819 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99689 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47226 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46681 * 120.00240 * 15 13 11 18 18 H 1.48501 * 109.46992 * 240.00222 * 15 13 11 19 19 C 1.55156 * 102.94409 * 97.21698 * 4 2 1 20 20 C 1.54907 * 101.58058 * 35.50594 * 19 4 2 21 21 N 1.47030 * 109.87761 * 238.90342 * 2 1 3 22 22 C 1.34774 * 125.64866 * 59.56670 * 21 2 1 23 23 O 1.21282 * 120.00015 * 359.97438 * 22 21 2 24 24 C 1.50700 * 120.00113 * 179.97438 * 22 21 2 25 25 O 1.42891 * 109.47308 * 179.97438 * 24 22 21 26 26 C 1.42897 * 114.00256 * 179.97438 * 25 24 22 27 27 C 1.52995 * 109.46911 * 60.00485 * 26 25 24 28 28 C 1.52996 * 109.47472 * 180.02562 * 26 25 24 29 29 C 1.53001 * 109.47359 * 300.00756 * 26 25 24 30 30 H 1.08998 * 109.46473 * 305.17443 * 1 2 3 31 31 H 1.09000 * 109.47208 * 65.17776 * 1 2 3 32 32 H 1.09001 * 109.46856 * 185.17909 * 1 2 3 33 33 H 1.00898 * 110.99452 * 322.13745 * 6 4 2 34 34 H 1.08997 * 109.47127 * 59.99872 * 7 6 4 35 35 H 1.09005 * 109.46672 * 299.99709 * 7 6 4 36 36 H 0.96999 * 120.00227 * 0.02562 * 10 8 7 37 37 H 0.97002 * 119.99633 * 179.97438 * 14 13 11 38 38 H 1.09003 * 111.00010 * 153.57614 * 19 4 2 39 39 H 1.08996 * 111.00839 * 277.43155 * 19 4 2 40 40 H 1.08999 * 110.37191 * 204.14910 * 20 19 4 41 41 H 1.09006 * 110.36609 * 81.82552 * 20 19 4 42 42 H 1.08999 * 109.46940 * 299.99528 * 24 22 21 43 43 H 1.09001 * 109.46733 * 59.99251 * 24 22 21 44 44 H 1.08997 * 109.47683 * 60.00210 * 27 26 25 45 45 H 1.09003 * 109.47622 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47579 * 299.99913 * 27 26 25 47 47 H 1.09002 * 109.46988 * 60.00140 * 28 26 25 48 48 H 1.09003 * 109.47665 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.47153 * 300.00367 * 28 26 25 50 50 H 1.08995 * 109.47114 * 59.99398 * 29 26 25 51 51 H 1.08995 * 109.47322 * 179.97438 * 29 26 25 52 52 H 1.09002 * 109.46928 * 299.99753 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0550 -0.7496 1.2426 5 1 2.9640 -0.2814 1.6200 6 7 1.0265 -0.8028 2.2904 7 6 1.6220 -1.1117 3.5973 8 6 0.5391 -1.1584 4.6442 9 8 -0.6152 -0.9540 4.3324 10 7 0.8531 -1.4273 5.9270 11 6 -0.1320 -1.4693 6.8796 12 1 -1.1597 -1.2873 6.6019 13 6 0.1919 -1.7460 8.2022 14 7 1.4424 -1.9670 8.5400 15 14 -1.1505 -1.8039 9.4999 16 1 -2.4639 -1.5229 8.8665 17 1 -1.1797 -3.1520 10.1220 18 1 -0.8750 -0.7833 10.5429 19 6 2.3518 -2.1696 0.6923 20 6 2.8567 -1.8499 -0.7369 21 7 2.0300 -0.7141 -1.1840 22 6 1.7753 -0.3845 -2.4658 23 8 1.0786 0.5756 -2.7181 24 6 2.3564 -1.2089 -3.5855 25 8 1.9457 -0.6638 -4.8410 26 6 2.4457 -1.3752 -5.9749 27 6 1.9511 -2.8223 -5.9277 28 6 1.9462 -0.7067 -7.2573 29 6 3.9754 -1.3582 -5.9540 30 1 -0.3632 0.5920 0.8400 31 1 -0.3634 0.4314 -0.9327 32 1 -0.3633 -1.0235 0.0928 33 1 0.5022 0.0585 2.3263 34 1 2.3467 -0.3404 3.8578 35 1 2.1222 -2.0790 3.5491 36 1 1.7762 -1.5904 6.1764 37 1 1.6685 -2.1598 9.4634 38 1 3.1270 -2.6619 1.2795 39 1 1.4452 -2.7737 0.6603 40 1 2.7087 -2.7081 -1.3924 41 1 3.9091 -1.5668 -0.7129 42 1 3.4443 -1.1939 -3.5210 43 1 2.0016 -2.2361 -3.5022 44 1 0.8613 -2.8345 -5.9427 45 1 2.3328 -3.3652 -6.7925 46 1 2.3073 -3.2984 -5.0142 47 1 2.2989 0.3241 -7.2907 48 1 2.3279 -1.2491 -8.1223 49 1 0.8564 -0.7185 -7.2725 50 1 4.3316 -1.8342 -5.0404 51 1 4.3567 -1.9012 -6.8187 52 1 4.3278 -0.3273 -5.9876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178532847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:38 Heat of formation + Delta-G solvation = -109.923523 kcal Electronic energy + Delta-G solvation = -30149.187288 eV Core-core repulsion = 25956.032477 eV Total energy + Delta-G solvation = -4193.154811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60942 -39.38512 -38.34605 -37.59144 -34.79970 -33.85350 -33.78164 -31.50942 -31.20894 -30.84399 -28.54946 -27.87687 -27.30024 -26.55630 -25.22370 -23.82169 -23.15429 -20.63824 -20.03602 -19.37265 -19.15500 -17.93129 -17.62693 -16.80482 -16.49394 -16.10950 -16.01053 -15.68558 -15.32665 -14.98277 -14.53354 -14.48387 -14.21228 -13.85327 -13.76452 -13.72805 -13.53943 -13.16764 -13.10122 -12.67581 -12.49634 -12.42910 -12.35725 -12.23271 -12.19043 -12.16008 -11.95301 -11.69662 -11.59963 -11.51817 -11.41738 -11.11475 -11.02459 -10.92466 -10.66255 -10.35224 -10.23787 -9.98530 -9.79181 -9.53448 -8.85101 -8.49172 -8.13851 -7.97821 -6.43480 -3.84142 2.39025 2.44489 3.15471 3.26305 3.33671 3.47915 3.88844 4.04009 4.13465 4.27580 4.36521 4.37649 4.42007 4.55096 4.62091 4.71129 4.81016 4.96646 4.97755 5.04051 5.08935 5.11209 5.20694 5.23277 5.26237 5.28622 5.29376 5.40535 5.41256 5.47278 5.53744 5.58132 5.61976 5.75665 5.80635 5.82531 5.83457 5.93696 6.03883 6.12433 6.25244 6.26695 6.51823 6.78927 7.15136 7.30608 7.54143 7.57461 8.01503 8.04985 8.59397 9.16550 9.52550 10.03823 10.74282 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.035275 B = 0.001697 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.577078 B =16496.335091 C =16768.958020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.139 3.861 3 H 0.074 0.926 4 C 0.077 3.923 5 H 0.058 0.942 6 N -0.654 5.654 7 C 0.050 3.950 8 C 0.441 3.559 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.123 4.123 20 C 0.096 3.904 21 N -0.612 5.612 22 C 0.530 3.470 23 O -0.516 6.516 24 C 0.045 3.955 25 O -0.351 6.351 26 C 0.104 3.896 27 C -0.181 4.181 28 C -0.137 4.137 29 C -0.180 4.180 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.354 0.646 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.337 -2.297 -26.707 28.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 H 0.092 0.908 4 C -0.034 4.034 5 H 0.076 0.924 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.161 4.161 20 C -0.027 4.027 21 N -0.350 5.350 22 C 0.318 3.682 23 O -0.391 6.391 24 C -0.035 4.035 25 O -0.270 6.270 26 C 0.065 3.935 27 C -0.238 4.238 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.177 0.823 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.931 -2.121 -27.109 28.621 hybrid contribution 0.815 0.261 1.281 1.541 sum 9.746 -1.860 -25.828 27.668 Atomic orbital electron populations 1.21988 0.93387 1.03550 1.02423 1.21608 0.96073 0.95243 0.83442 0.90823 1.22556 0.94013 0.95664 0.91213 0.92376 1.60318 1.23337 1.42197 1.03078 1.21724 0.95984 1.01422 0.89162 1.19781 0.89635 0.84605 0.83381 1.90537 1.20605 1.54734 1.80733 1.41862 1.10584 1.61700 1.05888 1.19762 0.91044 1.44978 0.87061 0.87844 1.25261 0.97205 0.97207 0.98268 1.69618 1.16966 1.48327 1.19400 0.85801 0.80742 0.77743 0.80073 1.19206 1.20751 1.20775 1.22870 1.02612 0.97201 0.93428 1.22429 0.94855 0.88805 0.96657 1.48438 1.51095 1.30793 1.04624 1.19847 0.81192 0.85265 0.81928 1.90727 1.37345 1.28168 1.82853 1.22178 0.99575 0.97195 0.84544 1.88102 1.73414 1.53693 1.11748 1.21600 0.93059 0.91772 0.87059 1.22460 1.02627 0.96103 1.02613 1.21742 1.02297 1.01252 0.94128 1.22458 0.95599 1.03091 1.02614 0.91199 0.91662 0.91292 0.82341 0.93764 0.89548 0.77485 0.91936 0.89835 0.89080 0.90566 0.91118 0.90290 0.90185 0.91409 0.91247 0.92188 0.91628 0.91000 0.91568 0.92203 0.91245 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 8.31 37.16 0.31 -1.83 16 2 C 0.14 1.69 3.41 -66.95 -0.23 1.46 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.08 0.88 3.10 -65.87 -0.20 0.67 16 5 H 0.06 0.62 7.93 -51.93 -0.41 0.20 16 6 N -0.65 -9.86 5.14 -106.05 -0.55 -10.41 16 7 C 0.05 0.82 6.02 -4.98 -0.03 0.79 16 8 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 9 O -0.58 -15.53 15.78 5.54 0.09 -15.44 16 10 N -0.56 -14.01 5.29 -10.96 -0.06 -14.06 16 11 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 15 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.12 -1.16 6.62 -24.58 -0.16 -1.32 16 20 C 0.10 0.74 6.69 -2.53 -0.02 0.72 16 21 N -0.61 -6.68 3.08 -163.01 -0.50 -7.18 16 22 C 0.53 6.67 7.70 -10.99 -0.08 6.59 16 23 O -0.52 -8.72 15.33 -14.35 -0.22 -8.94 16 24 C 0.04 0.41 4.62 36.01 0.17 0.58 16 25 O -0.35 -3.86 9.52 -55.14 -0.52 -4.39 16 26 C 0.10 0.77 1.14 -90.62 -0.10 0.67 16 27 C -0.18 -1.07 8.25 37.16 0.31 -0.77 16 28 C -0.14 -0.91 8.84 37.16 0.33 -0.58 16 29 C -0.18 -1.03 8.25 37.16 0.31 -0.72 16 30 H 0.07 0.96 6.61 -51.93 -0.34 0.62 16 31 H 0.06 0.99 6.59 -51.93 -0.34 0.64 16 32 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.35 5.68 6.38 -39.29 -0.25 5.43 16 34 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 36 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 0.44 7.48 -51.93 -0.39 0.05 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.55 6.42 -51.93 -0.33 0.21 16 43 H 0.08 0.58 6.12 -51.93 -0.32 0.27 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.32 6.54 -51.93 -0.34 -0.02 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.30 6.54 -51.93 -0.34 -0.04 16 51 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 52 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 411.82 15.07 6.21 6.21 Total: -1.00 -34.06 411.82 -8.41 -42.47 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -8.81 Total: 11.01 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 0.26 Total: 8.38 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.38 Total: -55.18 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.66 Total: -28.77 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.06 -8.41 -42.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178532847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.458 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds