Wall clock time and date at job start Wed Apr 1 2020 01:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.00109 * 2 1 4 4 C 1.54325 * 109.88559 * 121.09948 * 2 1 3 5 5 H 1.08993 * 110.72062 * 215.76152 * 4 2 1 6 6 N 1.46910 * 110.71590 * 338.85857 * 4 2 1 7 7 C 1.46902 * 110.99706 * 198.18594 * 6 4 2 8 8 C 1.50696 * 109.46972 * 180.02562 * 7 6 4 9 9 O 1.21301 * 120.00050 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00074 * 179.97438 * 8 7 6 11 11 C 1.37100 * 120.00146 * 179.97438 * 10 8 7 12 12 H 1.07997 * 119.99833 * 0.02562 * 11 10 8 13 13 C 1.38956 * 119.99983 * 180.02562 * 11 10 8 14 14 N 1.31409 * 119.99819 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99689 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47226 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46681 * 120.00240 * 15 13 11 18 18 H 1.48501 * 109.46992 * 240.00222 * 15 13 11 19 19 C 1.55156 * 102.94409 * 97.21698 * 4 2 1 20 20 C 1.54907 * 101.58058 * 35.50594 * 19 4 2 21 21 N 1.47030 * 109.87761 * 238.90342 * 2 1 3 22 22 C 1.34774 * 125.64866 * 59.56670 * 21 2 1 23 23 O 1.21282 * 120.00015 * 359.97438 * 22 21 2 24 24 C 1.50700 * 120.00113 * 179.97438 * 22 21 2 25 25 O 1.42891 * 109.47308 * 179.97438 * 24 22 21 26 26 C 1.42897 * 114.00256 * 179.97438 * 25 24 22 27 27 C 1.52995 * 109.46911 * 60.00485 * 26 25 24 28 28 C 1.52996 * 109.47472 * 180.02562 * 26 25 24 29 29 C 1.53001 * 109.47359 * 300.00756 * 26 25 24 30 30 H 1.08998 * 109.46473 * 305.17443 * 1 2 3 31 31 H 1.09000 * 109.47208 * 65.17776 * 1 2 3 32 32 H 1.09001 * 109.46856 * 185.17909 * 1 2 3 33 33 H 1.00898 * 110.99452 * 322.13745 * 6 4 2 34 34 H 1.08997 * 109.47127 * 59.99872 * 7 6 4 35 35 H 1.09005 * 109.46672 * 299.99709 * 7 6 4 36 36 H 0.96999 * 120.00227 * 0.02562 * 10 8 7 37 37 H 0.97002 * 119.99633 * 179.97438 * 14 13 11 38 38 H 1.09003 * 111.00010 * 153.57614 * 19 4 2 39 39 H 1.08996 * 111.00839 * 277.43155 * 19 4 2 40 40 H 1.08999 * 110.37191 * 204.14910 * 20 19 4 41 41 H 1.09006 * 110.36609 * 81.82552 * 20 19 4 42 42 H 1.08999 * 109.46940 * 299.99528 * 24 22 21 43 43 H 1.09001 * 109.46733 * 59.99251 * 24 22 21 44 44 H 1.08997 * 109.47683 * 60.00210 * 27 26 25 45 45 H 1.09003 * 109.47622 * 180.02562 * 27 26 25 46 46 H 1.09001 * 109.47579 * 299.99913 * 27 26 25 47 47 H 1.09002 * 109.46988 * 60.00140 * 28 26 25 48 48 H 1.09003 * 109.47665 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.47153 * 300.00367 * 28 26 25 50 50 H 1.08995 * 109.47114 * 59.99398 * 29 26 25 51 51 H 1.08995 * 109.47322 * 179.97438 * 29 26 25 52 52 H 1.09002 * 109.46928 * 299.99753 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0550 -0.7496 1.2426 5 1 2.9640 -0.2814 1.6200 6 7 1.0265 -0.8028 2.2904 7 6 1.6220 -1.1117 3.5973 8 6 0.5391 -1.1584 4.6442 9 8 -0.6152 -0.9540 4.3324 10 7 0.8531 -1.4273 5.9270 11 6 -0.1320 -1.4693 6.8796 12 1 -1.1597 -1.2873 6.6019 13 6 0.1919 -1.7460 8.2022 14 7 1.4424 -1.9670 8.5400 15 14 -1.1505 -1.8039 9.4999 16 1 -2.4639 -1.5229 8.8665 17 1 -1.1797 -3.1520 10.1220 18 1 -0.8750 -0.7833 10.5429 19 6 2.3518 -2.1696 0.6923 20 6 2.8567 -1.8499 -0.7369 21 7 2.0300 -0.7141 -1.1840 22 6 1.7753 -0.3845 -2.4658 23 8 1.0786 0.5756 -2.7181 24 6 2.3564 -1.2089 -3.5855 25 8 1.9457 -0.6638 -4.8410 26 6 2.4457 -1.3752 -5.9749 27 6 1.9511 -2.8223 -5.9277 28 6 1.9462 -0.7067 -7.2573 29 6 3.9754 -1.3582 -5.9540 30 1 -0.3632 0.5920 0.8400 31 1 -0.3634 0.4314 -0.9327 32 1 -0.3633 -1.0235 0.0928 33 1 0.5022 0.0585 2.3263 34 1 2.3467 -0.3404 3.8578 35 1 2.1222 -2.0790 3.5491 36 1 1.7762 -1.5904 6.1764 37 1 1.6685 -2.1598 9.4634 38 1 3.1270 -2.6619 1.2795 39 1 1.4452 -2.7737 0.6603 40 1 2.7087 -2.7081 -1.3924 41 1 3.9091 -1.5668 -0.7129 42 1 3.4443 -1.1939 -3.5210 43 1 2.0016 -2.2361 -3.5022 44 1 0.8613 -2.8345 -5.9427 45 1 2.3328 -3.3652 -6.7925 46 1 2.3073 -3.2984 -5.0142 47 1 2.2989 0.3241 -7.2907 48 1 2.3279 -1.2491 -8.1223 49 1 0.8564 -0.7185 -7.2725 50 1 4.3316 -1.8342 -5.0404 51 1 4.3567 -1.9012 -6.8187 52 1 4.3278 -0.3273 -5.9876 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178532847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:36 Heat of formation + Delta-G solvation = -134.125309 kcal Electronic energy + Delta-G solvation = -30150.236757 eV Core-core repulsion = 25956.032477 eV Total energy + Delta-G solvation = -4194.204279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50046 -40.26380 -39.85430 -38.68972 -36.19725 -35.56444 -34.41682 -33.27084 -32.42796 -31.82587 -29.27956 -28.28597 -28.26161 -27.64516 -26.53848 -25.31803 -23.97583 -21.39772 -21.05850 -20.75125 -20.15344 -19.89300 -18.44452 -17.82018 -17.51185 -17.12967 -16.92847 -16.79177 -16.59371 -16.30842 -15.85746 -15.59149 -15.37931 -15.11199 -14.72380 -14.53558 -14.36667 -14.24901 -14.06010 -13.94568 -13.49382 -13.39583 -13.31944 -13.16183 -13.09258 -12.89812 -12.85943 -12.74775 -12.67466 -12.65152 -12.40837 -12.37123 -12.22057 -12.11769 -11.85068 -11.64384 -11.54923 -11.50108 -10.76293 -10.58546 -10.32317 -9.99709 -9.74392 -9.34259 -8.46053 -5.94126 1.36928 1.42536 1.52348 1.56041 1.60139 2.07636 2.29888 2.81170 2.95141 3.21741 3.32490 3.52712 3.66203 3.70829 3.89949 3.96258 4.04008 4.07791 4.12594 4.21285 4.27704 4.32032 4.32736 4.45192 4.53287 4.60564 4.64455 4.66868 4.67852 4.70507 4.73704 4.81513 4.82200 4.94997 4.95204 5.01476 5.05817 5.17274 5.25840 5.29512 5.33664 5.37709 5.39345 5.42590 5.90475 6.11913 6.19419 6.33025 6.48488 6.61910 7.10746 7.14511 7.58500 8.14319 8.71422 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.035275 B = 0.001697 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.577078 B =16496.335091 C =16768.958020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 H 0.069 0.931 4 C 0.080 3.920 5 H 0.079 0.921 6 N -0.669 5.669 7 C 0.067 3.933 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.573 5.573 11 C -0.333 4.333 12 H 0.077 0.923 13 C -0.011 4.011 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.276 1.276 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.120 4.120 20 C 0.096 3.904 21 N -0.610 5.610 22 C 0.521 3.479 23 O -0.573 6.573 24 C 0.051 3.949 25 O -0.388 6.388 26 C 0.095 3.905 27 C -0.178 4.178 28 C -0.139 4.139 29 C -0.177 4.177 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.345 0.655 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.054 0.946 48 H 0.095 0.905 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.086 0.914 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.029 -4.069 -27.190 30.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.030 4.030 5 H 0.097 0.903 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.095 0.905 13 C -0.211 4.211 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.200 1.200 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.158 4.158 20 C -0.025 4.025 21 N -0.345 5.345 22 C 0.311 3.689 23 O -0.452 6.452 24 C -0.028 4.028 25 O -0.308 6.308 26 C 0.057 3.943 27 C -0.235 4.235 28 C -0.196 4.196 29 C -0.234 4.234 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.166 0.834 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.114 0.886 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.105 0.895 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.686 -3.935 -27.590 30.220 hybrid contribution -0.043 0.829 1.370 1.602 sum 11.643 -3.106 -26.221 28.857 Atomic orbital electron populations 1.21841 0.95224 1.02281 1.00980 1.21513 0.94570 0.95629 0.84760 0.91316 1.22634 0.93457 0.97339 0.89563 0.90278 1.60329 1.24798 1.42009 1.03196 1.21576 0.93729 1.03601 0.87662 1.20936 0.90595 0.82182 0.83806 1.90509 1.23133 1.56009 1.81484 1.41915 1.10282 1.62458 1.06372 1.19683 0.90767 1.47231 0.88617 0.90522 1.25984 0.99392 0.96254 0.99480 1.69666 1.18034 1.48075 1.20183 0.84905 0.77743 0.78318 0.77572 1.20030 1.19584 1.19646 1.22886 1.02628 0.95486 0.94809 1.22708 0.95560 0.88488 0.95783 1.48510 1.50845 1.31310 1.03867 1.20617 0.80426 0.84906 0.82991 1.90698 1.39970 1.30767 1.83767 1.22245 1.00821 0.96980 0.82774 1.88070 1.74427 1.55200 1.13059 1.21857 0.94298 0.92257 0.85925 1.22445 1.01770 0.95333 1.04002 1.21801 1.01529 1.01129 0.95159 1.22433 0.94052 1.02884 1.04036 0.91926 0.93636 0.92466 0.83414 0.91298 0.87095 0.76872 0.91326 0.87504 0.90983 0.87933 0.88200 0.87474 0.88031 0.92829 0.89410 0.91180 0.92680 0.88596 0.92899 0.91084 0.89465 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.31 71.98 0.60 -3.59 16 2 C 0.14 3.29 3.41 45.34 0.15 3.45 16 3 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.08 1.67 3.10 46.10 0.14 1.81 16 5 H 0.08 1.38 7.93 -2.39 -0.02 1.36 16 6 N -0.67 -19.57 5.14 -489.43 -2.52 -22.09 16 7 C 0.07 2.08 6.02 85.56 0.52 2.60 16 8 C 0.44 20.17 7.82 87.66 0.69 20.86 16 9 O -0.62 -34.30 15.78 -3.09 -0.05 -34.35 16 10 N -0.57 -28.70 5.29 -306.98 -1.62 -30.32 16 11 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 12 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 13 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 14 N -0.92 -48.75 13.05 21.66 0.28 -48.46 16 15 Si 0.99 42.76 29.55 68.60 2.03 44.78 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 C -0.12 -1.88 6.62 31.99 0.21 -1.67 16 20 C 0.10 1.11 6.69 86.85 0.58 1.69 16 21 N -0.61 -12.34 3.08 -788.03 -2.43 -14.77 16 22 C 0.52 12.83 7.70 87.66 0.68 13.50 16 23 O -0.57 -20.18 15.33 16.00 0.25 -19.93 16 24 C 0.05 0.83 4.62 71.24 0.33 1.16 16 25 O -0.39 -8.33 9.52 -129.94 -1.24 -9.56 16 26 C 0.10 1.26 1.14 -10.80 -0.01 1.25 16 27 C -0.18 -1.73 8.25 71.98 0.59 -1.14 16 28 C -0.14 -1.77 8.84 71.98 0.64 -1.13 16 29 C -0.18 -1.56 8.25 71.98 0.59 -0.96 16 30 H 0.06 1.85 6.61 -2.39 -0.02 1.83 16 31 H 0.04 1.48 6.59 -2.39 -0.02 1.46 16 32 H 0.06 1.75 8.11 -2.39 -0.02 1.73 16 33 H 0.34 11.20 6.38 -89.70 -0.57 10.62 16 34 H 0.07 1.86 8.09 -2.39 -0.02 1.84 16 35 H 0.11 2.98 8.07 -2.38 -0.02 2.96 16 36 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 37 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 0.70 7.48 -2.39 -0.02 0.68 16 41 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.11 1.11 6.42 -2.39 -0.02 1.09 16 43 H 0.10 1.18 6.12 -2.39 -0.01 1.17 16 44 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.52 6.54 -2.39 -0.02 0.51 16 47 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.07 0.46 6.54 -2.39 -0.02 0.44 16 51 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 52 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -78.01 411.82 1.31 -76.70 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.38 Total: 38.28 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.99 Total: 19.72 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -6.29 Total: -115.64 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -1.04 Total: -63.84 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -78.01 1.31 -76.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178532847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.428 kcal (2) G-P(sol) polarization free energy of solvation -78.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds