Wall clock time and date at job start Wed Apr 1 2020 01:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99935 * 2 1 4 4 H 1.09000 * 109.46858 * 30.00025 * 3 2 1 5 5 C 1.52998 * 109.47236 * 270.00195 * 3 2 1 6 6 C 1.52992 * 109.46782 * 149.99811 * 3 2 1 7 7 C 1.53007 * 109.47464 * 294.99891 * 6 3 2 8 8 C 1.50700 * 109.47259 * 180.02562 * 7 6 3 9 9 O 1.21285 * 119.99943 * 0.02562 * 8 7 6 10 10 N 1.34765 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.47428 * 125.64784 * 359.69553 * 10 8 7 12 12 C 1.54693 * 104.94336 * 204.07209 * 11 10 8 13 13 C 1.55166 * 101.67580 * 323.27782 * 12 11 10 14 14 H 1.09007 * 110.86824 * 276.90239 * 13 12 11 15 15 N 1.46891 * 110.72109 * 153.70042 * 13 12 11 16 16 C 1.46900 * 111.00130 * 84.97800 * 15 13 12 17 17 C 1.50707 * 109.46984 * 179.97438 * 16 15 13 18 18 O 1.21292 * 119.99876 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99741 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99882 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00230 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99852 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99633 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00327 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47455 * 89.99678 * 24 22 20 26 26 H 1.48496 * 109.47357 * 210.00496 * 24 22 20 27 27 H 1.48503 * 109.47109 * 329.99814 * 24 22 20 28 28 C 1.47026 * 125.65280 * 179.97438 * 10 8 7 29 29 H 1.08994 * 109.87995 * 298.32899 * 28 10 8 30 30 C 1.53000 * 109.87847 * 59.48780 * 28 10 8 31 31 H 1.09002 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47402 * 300.00124 * 1 2 3 33 33 H 1.09000 * 109.47150 * 60.00116 * 1 2 3 34 34 H 1.08997 * 109.47124 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.46782 * 300.00175 * 5 3 2 36 36 H 1.08997 * 109.47172 * 59.99571 * 5 3 2 37 37 H 1.09003 * 109.47216 * 175.00201 * 6 3 2 38 38 H 1.09000 * 109.47487 * 55.00302 * 6 3 2 39 39 H 1.09002 * 109.46848 * 300.00175 * 7 6 3 40 40 H 1.08993 * 109.46620 * 60.00020 * 7 6 3 41 41 H 1.08994 * 110.36515 * 322.99859 * 11 10 8 42 42 H 1.08997 * 110.37024 * 85.32744 * 11 10 8 43 43 H 1.09000 * 111.10465 * 205.10913 * 12 11 10 44 44 H 1.08995 * 110.85006 * 81.33249 * 12 11 10 45 45 H 1.00903 * 111.00088 * 208.93741 * 15 13 12 46 46 H 1.08996 * 109.47359 * 300.00383 * 16 15 13 47 47 H 1.09001 * 109.47002 * 60.00645 * 16 15 13 48 48 H 0.96996 * 120.00152 * 359.97438 * 19 17 16 49 49 H 0.97000 * 119.99867 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.47047 * 66.03761 * 30 28 10 51 51 H 1.09003 * 109.47210 * 186.03527 * 30 28 10 52 52 H 1.09003 * 109.47224 * 306.03718 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3588 1.2632 0.7213 7 6 3.1382 0.9184 2.1956 8 6 4.4666 0.8774 2.9061 9 8 5.4890 1.1023 2.2938 10 7 4.5183 0.5918 4.2221 11 6 3.3579 0.3069 5.0858 12 6 3.8302 0.6566 6.5167 13 6 5.3102 0.1917 6.4812 14 1 5.3857 -0.8787 6.6732 15 7 6.1162 0.9492 7.4477 16 6 6.0369 0.3477 8.7855 17 6 6.8750 1.1499 9.7475 18 8 7.4785 2.1269 9.3571 19 7 6.9538 0.7817 11.0416 20 6 7.7157 1.5118 11.9169 21 1 8.2531 2.3817 11.5693 22 6 7.7974 1.1318 13.2509 23 7 8.5281 1.8313 14.0897 24 14 6.8685 -0.3733 13.8520 25 1 7.7306 -1.5746 13.7149 26 1 6.4985 -0.1896 15.2784 27 1 5.6377 -0.5521 13.0406 28 6 5.7407 0.5183 5.0357 29 1 6.3920 -0.2688 4.6559 30 6 6.4700 1.8628 5.0015 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.6606 2.7673 -1.4424 35 1 2.8829 1.0775 -1.9563 36 1 1.2569 1.8014 -1.9563 37 1 3.8427 2.2369 0.6444 38 1 3.9931 0.5051 0.2618 39 1 2.5040 1.6765 2.6550 40 1 2.6544 -0.0553 2.2724 41 1 2.5113 0.9321 4.8020 42 1 3.0892 -0.7476 5.0246 43 1 3.2639 0.1006 7.2638 44 1 3.7620 1.7294 6.6965 45 1 7.0745 1.0227 7.1405 46 1 5.0001 0.3445 9.1216 47 1 6.4093 -0.6760 8.7463 48 1 6.4708 0.0006 11.3539 49 1 8.5848 1.5663 15.0211 50 1 5.8616 2.6189 5.4978 51 1 7.4263 1.7707 5.5163 52 1 6.6416 2.1569 3.9660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178532922.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:30 Heat of formation + Delta-G solvation = -112.781707 kcal Electronic energy + Delta-G solvation = -29874.249680 eV Core-core repulsion = 25680.970929 eV Total energy + Delta-G solvation = -4193.278751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.56857 -39.00646 -38.52155 -37.80862 -34.85197 -34.11747 -33.85976 -31.74556 -31.51345 -31.04060 -30.00940 -27.17046 -26.87251 -25.45983 -24.89161 -23.62074 -22.92239 -21.46071 -20.02003 -19.44308 -19.11237 -18.39673 -17.42173 -17.28642 -16.36562 -16.18550 -15.80519 -15.64152 -15.44797 -15.36615 -15.02696 -14.77458 -14.23760 -13.92336 -13.82457 -13.50880 -13.38885 -13.20182 -13.14449 -12.94390 -12.71201 -12.57844 -12.42170 -12.25217 -12.05827 -12.03898 -11.90182 -11.77173 -11.60959 -11.49034 -11.45067 -11.21482 -11.00780 -10.96065 -10.70240 -10.61293 -10.09637 -9.99104 -9.83521 -9.58884 -8.83508 -8.61359 -8.24491 -8.18200 -6.32378 -3.83945 2.49557 2.72535 3.00715 3.04982 3.13597 3.34459 3.72210 4.01565 4.08614 4.09536 4.36205 4.41737 4.46285 4.61116 4.78132 4.80138 4.84347 4.90051 4.91607 4.94855 4.99555 5.09675 5.17156 5.17924 5.20819 5.24505 5.28929 5.34402 5.45146 5.46903 5.47600 5.59425 5.63650 5.67185 5.73443 5.75878 5.81070 5.89094 5.91867 6.03477 6.10628 6.27739 6.48911 6.77641 7.04415 7.34688 7.49795 7.56720 8.02341 8.13112 8.58168 8.93642 9.40905 9.80930 10.80735 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029644 B = 0.001726 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.306609 B =16218.769998 C =16849.845769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.084 3.916 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.134 4.134 8 C 0.529 3.471 9 O -0.539 6.539 10 N -0.613 5.613 11 C 0.099 3.901 12 C -0.124 4.124 13 C 0.076 3.924 14 H 0.058 0.942 15 N -0.654 5.654 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.563 6.563 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.137 3.863 29 H 0.072 0.928 30 C -0.155 4.155 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.355 0.645 46 H 0.087 0.913 47 H 0.045 0.955 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.068 0.932 51 H 0.067 0.933 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.998 -6.719 -25.491 32.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.174 4.174 8 C 0.318 3.682 9 O -0.416 6.416 10 N -0.348 5.348 11 C -0.024 4.024 12 C -0.162 4.162 13 C -0.035 4.035 14 H 0.075 0.925 15 N -0.289 5.289 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.445 6.445 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C 0.033 3.967 29 H 0.090 0.910 30 C -0.213 4.213 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.178 0.822 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.305 -5.581 -25.821 32.140 hybrid contribution -0.509 -1.835 0.768 2.053 sum -18.815 -7.415 -25.053 32.197 Atomic orbital electron populations 1.22782 0.81278 1.02718 0.99884 1.87946 1.19439 1.27899 1.95085 1.22206 0.94856 0.84591 0.95757 0.92080 1.22266 1.02306 1.01961 0.96688 1.21471 0.95611 1.03884 0.92906 1.21622 0.95088 1.04446 0.96197 1.20363 0.91596 0.76070 0.80139 1.90699 1.36445 1.49225 1.65248 1.48557 1.08381 1.69927 1.07959 1.22325 0.89052 1.00692 0.90343 1.22840 0.94954 1.03597 0.94838 1.22561 0.94498 0.95808 0.90602 0.92453 1.60290 1.17311 1.51146 1.00192 1.21759 1.00976 0.95814 0.90023 1.19681 0.86196 0.87686 0.82907 1.90575 1.48311 1.28492 1.77145 1.42200 1.45061 1.27461 1.08255 1.19436 1.24241 1.10798 0.88944 0.86273 1.25039 0.97363 0.98011 0.95733 1.69622 1.38937 1.38967 1.04551 0.86669 0.80036 0.83222 0.79425 1.19681 1.20172 1.19493 1.21591 0.86474 0.99136 0.89494 0.90963 1.21985 1.00660 0.96246 1.02458 0.89700 0.94014 0.94199 0.91373 0.91574 0.92540 0.89735 0.90167 0.89277 0.88394 0.90468 0.91294 0.89987 0.89153 0.82211 0.89434 0.93666 0.79713 0.91609 0.91254 0.91381 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.24 16 2 O -0.38 -2.99 9.88 -35.23 -0.35 -3.34 16 3 C 0.08 0.56 2.72 -26.74 -0.07 0.48 16 4 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 5 C -0.17 -1.04 9.53 37.16 0.35 -0.69 16 6 C -0.10 -0.82 4.21 -26.73 -0.11 -0.93 16 7 C -0.13 -1.05 4.61 -27.88 -0.13 -1.18 16 8 C 0.53 6.02 7.62 -10.99 -0.08 5.94 16 9 O -0.54 -8.07 14.79 5.55 0.08 -7.99 16 10 N -0.61 -6.42 3.08 -163.16 -0.50 -6.92 16 11 C 0.10 0.76 6.68 -2.64 -0.02 0.74 16 12 C -0.12 -1.13 6.63 -24.69 -0.16 -1.30 16 13 C 0.08 0.84 3.10 -65.88 -0.20 0.64 16 14 H 0.06 0.58 7.92 -51.92 -0.41 0.17 16 15 N -0.65 -9.47 5.12 -106.05 -0.54 -10.02 16 16 C 0.05 0.73 6.02 -4.97 -0.03 0.70 16 17 C 0.45 9.93 7.82 -10.98 -0.09 9.84 16 18 O -0.56 -14.86 15.78 5.55 0.09 -14.77 16 19 N -0.59 -13.79 5.09 -10.96 -0.06 -13.84 16 20 C -0.31 -8.57 10.16 -14.93 -0.15 -8.72 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 24 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 28 C 0.14 1.59 3.41 -66.95 -0.23 1.37 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 C -0.16 -2.06 8.30 37.16 0.31 -1.75 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.17 8.08 -51.93 -0.42 -0.25 16 33 H 0.04 0.17 7.87 -51.93 -0.41 -0.24 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.09 0.55 7.84 -51.93 -0.41 0.14 16 40 H 0.10 0.71 7.82 -51.93 -0.41 0.30 16 41 H 0.08 0.46 7.47 -51.93 -0.39 0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.36 5.50 6.41 -39.29 -0.25 5.25 16 46 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 47 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 48 H 0.37 7.55 5.76 -40.82 -0.24 7.31 16 49 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 51 H 0.07 0.91 6.72 -51.93 -0.35 0.56 16 52 H 0.06 0.95 6.53 -51.93 -0.34 0.61 16 LS Contribution 414.48 15.07 6.25 6.25 Total: -1.00 -34.49 414.48 -7.64 -42.13 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -9.04 Total: 11.51 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 0.38 Total: 7.42 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.33 Total: -55.60 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.18 Total: -26.10 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.49 -7.64 -42.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178532922.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.656 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds