Wall clock time and date at job start Wed Apr 1 2020 01:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99935 * 2 1 4 4 H 1.09000 * 109.46858 * 30.00025 * 3 2 1 5 5 C 1.52998 * 109.47236 * 270.00195 * 3 2 1 6 6 C 1.52992 * 109.46782 * 149.99811 * 3 2 1 7 7 C 1.53007 * 109.47464 * 294.99891 * 6 3 2 8 8 C 1.50700 * 109.47259 * 180.02562 * 7 6 3 9 9 O 1.21285 * 119.99943 * 0.02562 * 8 7 6 10 10 N 1.34765 * 120.00100 * 179.97438 * 8 7 6 11 11 C 1.47428 * 125.64784 * 359.69553 * 10 8 7 12 12 C 1.54693 * 104.94336 * 204.07209 * 11 10 8 13 13 C 1.55166 * 101.67580 * 323.27782 * 12 11 10 14 14 H 1.09007 * 110.86824 * 276.90239 * 13 12 11 15 15 N 1.46891 * 110.72109 * 153.70042 * 13 12 11 16 16 C 1.46900 * 111.00130 * 84.97800 * 15 13 12 17 17 C 1.50707 * 109.46984 * 179.97438 * 16 15 13 18 18 O 1.21292 * 119.99876 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99741 * 180.02562 * 17 16 15 20 20 C 1.37101 * 119.99882 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00230 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99852 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99633 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00327 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47455 * 89.99678 * 24 22 20 26 26 H 1.48496 * 109.47357 * 210.00496 * 24 22 20 27 27 H 1.48503 * 109.47109 * 329.99814 * 24 22 20 28 28 C 1.47026 * 125.65280 * 179.97438 * 10 8 7 29 29 H 1.08994 * 109.87995 * 298.32899 * 28 10 8 30 30 C 1.53000 * 109.87847 * 59.48780 * 28 10 8 31 31 H 1.09002 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47402 * 300.00124 * 1 2 3 33 33 H 1.09000 * 109.47150 * 60.00116 * 1 2 3 34 34 H 1.08997 * 109.47124 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.46782 * 300.00175 * 5 3 2 36 36 H 1.08997 * 109.47172 * 59.99571 * 5 3 2 37 37 H 1.09003 * 109.47216 * 175.00201 * 6 3 2 38 38 H 1.09000 * 109.47487 * 55.00302 * 6 3 2 39 39 H 1.09002 * 109.46848 * 300.00175 * 7 6 3 40 40 H 1.08993 * 109.46620 * 60.00020 * 7 6 3 41 41 H 1.08994 * 110.36515 * 322.99859 * 11 10 8 42 42 H 1.08997 * 110.37024 * 85.32744 * 11 10 8 43 43 H 1.09000 * 111.10465 * 205.10913 * 12 11 10 44 44 H 1.08995 * 110.85006 * 81.33249 * 12 11 10 45 45 H 1.00903 * 111.00088 * 208.93741 * 15 13 12 46 46 H 1.08996 * 109.47359 * 300.00383 * 16 15 13 47 47 H 1.09001 * 109.47002 * 60.00645 * 16 15 13 48 48 H 0.96996 * 120.00152 * 359.97438 * 19 17 16 49 49 H 0.97000 * 119.99867 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.47047 * 66.03761 * 30 28 10 51 51 H 1.09003 * 109.47210 * 186.03527 * 30 28 10 52 52 H 1.09003 * 109.47224 * 306.03718 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3588 1.2632 0.7213 7 6 3.1382 0.9184 2.1956 8 6 4.4666 0.8774 2.9061 9 8 5.4890 1.1023 2.2938 10 7 4.5183 0.5918 4.2221 11 6 3.3579 0.3069 5.0858 12 6 3.8302 0.6566 6.5167 13 6 5.3102 0.1917 6.4812 14 1 5.3857 -0.8787 6.6732 15 7 6.1162 0.9492 7.4477 16 6 6.0369 0.3477 8.7855 17 6 6.8750 1.1499 9.7475 18 8 7.4785 2.1269 9.3571 19 7 6.9538 0.7817 11.0416 20 6 7.7157 1.5118 11.9169 21 1 8.2531 2.3817 11.5693 22 6 7.7974 1.1318 13.2509 23 7 8.5281 1.8313 14.0897 24 14 6.8685 -0.3733 13.8520 25 1 7.7306 -1.5746 13.7149 26 1 6.4985 -0.1896 15.2784 27 1 5.6377 -0.5521 13.0406 28 6 5.7407 0.5183 5.0357 29 1 6.3920 -0.2688 4.6559 30 6 6.4700 1.8628 5.0015 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.6606 2.7673 -1.4424 35 1 2.8829 1.0775 -1.9563 36 1 1.2569 1.8014 -1.9563 37 1 3.8427 2.2369 0.6444 38 1 3.9931 0.5051 0.2618 39 1 2.5040 1.6765 2.6550 40 1 2.6544 -0.0553 2.2724 41 1 2.5113 0.9321 4.8020 42 1 3.0892 -0.7476 5.0246 43 1 3.2639 0.1006 7.2638 44 1 3.7620 1.7294 6.6965 45 1 7.0745 1.0227 7.1405 46 1 5.0001 0.3445 9.1216 47 1 6.4093 -0.6760 8.7463 48 1 6.4708 0.0006 11.3539 49 1 8.5848 1.5663 15.0211 50 1 5.8616 2.6189 5.4978 51 1 7.4263 1.7707 5.5163 52 1 6.6416 2.1569 3.9660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178532922.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:28 Heat of formation + Delta-G solvation = -139.280405 kcal Electronic energy + Delta-G solvation = -29875.398750 eV Core-core repulsion = 25680.970929 eV Total energy + Delta-G solvation = -4194.427821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42676 -40.28703 -39.47334 -38.79232 -36.21414 -35.57982 -34.71202 -33.73744 -32.46423 -31.85551 -30.74732 -28.35078 -27.51710 -26.50923 -25.87277 -24.97815 -23.65793 -22.01357 -21.28616 -20.85959 -20.31293 -19.93755 -18.23376 -17.82792 -17.72948 -17.19344 -16.97735 -16.58719 -16.51736 -16.27918 -15.88850 -15.71754 -15.59984 -15.04592 -14.77502 -14.67288 -14.47490 -14.37440 -14.08199 -13.93170 -13.83243 -13.42640 -13.40426 -13.33674 -13.11913 -13.09640 -12.90530 -12.68451 -12.46303 -12.39915 -12.33919 -12.19155 -12.06673 -11.96013 -11.81001 -11.61014 -11.52619 -11.49617 -10.81514 -10.50100 -10.40841 -10.23511 -9.67513 -9.34170 -8.39904 -6.01071 1.31530 1.37369 1.46421 1.65186 1.92443 1.98372 2.24750 2.74977 2.90469 3.16868 3.31388 3.41658 3.69534 3.72340 3.82382 4.05542 4.11016 4.16509 4.20969 4.30433 4.31886 4.36759 4.45713 4.48230 4.50627 4.56397 4.59842 4.64001 4.65911 4.66364 4.71824 4.80251 4.83721 4.93299 4.99106 5.03020 5.05699 5.08499 5.21979 5.29065 5.32233 5.34308 5.44130 5.54402 5.91989 6.06537 6.31502 6.34828 6.56261 6.61394 6.89904 7.18130 7.41671 7.98997 8.77848 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029644 B = 0.001726 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.306609 B =16218.769998 C =16849.845769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.087 3.913 4 H 0.080 0.920 5 C -0.175 4.175 6 C -0.099 4.099 7 C -0.122 4.122 8 C 0.520 3.480 9 O -0.586 6.586 10 N -0.614 5.614 11 C 0.100 3.900 12 C -0.120 4.120 13 C 0.081 3.919 14 H 0.081 0.919 15 N -0.673 5.673 16 C 0.063 3.937 17 C 0.448 3.552 18 O -0.616 6.616 19 N -0.590 5.590 20 C -0.330 4.330 21 H 0.053 0.947 22 C -0.016 4.016 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.277 1.277 27 H -0.227 1.227 28 C 0.136 3.864 29 H 0.066 0.934 30 C -0.145 4.145 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.345 0.655 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.056 0.944 51 H 0.058 0.942 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.267 -9.893 -25.604 35.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.030 3.970 4 H 0.098 0.902 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.162 4.162 8 C 0.311 3.689 9 O -0.467 6.467 10 N -0.348 5.348 11 C -0.022 4.022 12 C -0.158 4.158 13 C -0.029 4.029 14 H 0.099 0.901 15 N -0.307 5.307 16 C -0.069 4.069 17 C 0.236 3.764 18 O -0.500 6.500 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.071 0.929 22 C -0.215 4.215 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.150 1.150 28 C 0.032 3.968 29 H 0.084 0.916 30 C -0.203 4.203 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.089 0.911 45 H 0.166 0.834 46 H 0.138 0.862 47 H 0.097 0.903 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.632 -8.776 -25.947 35.531 hybrid contribution 0.905 -0.722 0.717 1.362 sum -21.726 -9.497 -25.230 34.623 Atomic orbital electron populations 1.22948 0.79867 1.03560 1.00829 1.87916 1.21060 1.28401 1.95223 1.22176 0.94169 0.84779 0.95906 0.90207 1.22269 1.02566 1.01917 0.96491 1.21414 0.96252 1.02619 0.93421 1.21614 0.93208 1.05921 0.95413 1.21070 0.92338 0.75126 0.80330 1.90679 1.38287 1.51339 1.66346 1.48659 1.08917 1.69223 1.07955 1.22566 0.88368 1.02695 0.88586 1.22857 0.93645 1.02754 0.96588 1.22633 0.94981 0.96610 0.88702 0.90132 1.60300 1.17176 1.52619 1.00616 1.21682 1.01047 0.95686 0.88508 1.21036 0.85139 0.87084 0.83158 1.90558 1.50277 1.31060 1.78104 1.42010 1.45118 1.27845 1.08243 1.19004 1.25844 1.10354 0.90687 0.92892 1.26146 0.98072 1.02211 0.95039 1.69814 1.40892 1.41698 1.05246 0.85345 0.79780 0.77377 0.78883 1.18268 1.20179 1.15023 1.21502 0.87148 0.97513 0.90671 0.91599 1.21838 1.00366 0.97282 1.00829 0.89011 0.92691 0.93609 0.90800 0.92860 0.91585 0.90550 0.92569 0.86792 0.87044 0.88152 0.88828 0.87423 0.91099 0.83397 0.86244 0.90267 0.77386 0.91198 0.92512 0.92272 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.82 113.37 1.23 1.41 16 2 O -0.41 -5.55 9.88 -148.98 -1.47 -7.02 16 3 C 0.09 1.01 2.72 30.59 0.08 1.10 16 4 H 0.08 0.63 7.79 -2.39 -0.02 0.61 16 5 C -0.17 -1.92 9.53 71.98 0.69 -1.23 16 6 C -0.10 -1.54 4.21 30.59 0.13 -1.41 16 7 C -0.12 -1.66 4.61 29.85 0.14 -1.52 16 8 C 0.52 11.39 7.62 87.66 0.67 12.06 16 9 O -0.59 -18.09 14.79 -3.04 -0.05 -18.14 16 10 N -0.61 -11.66 3.08 -788.51 -2.43 -14.09 16 11 C 0.10 1.10 6.68 86.78 0.58 1.68 16 12 C -0.12 -1.72 6.63 31.91 0.21 -1.51 16 13 C 0.08 1.54 3.10 46.11 0.14 1.68 16 14 H 0.08 1.24 7.92 -2.38 -0.02 1.22 16 15 N -0.67 -18.37 5.12 -489.44 -2.51 -20.88 16 16 C 0.06 1.75 6.02 85.56 0.52 2.26 16 17 C 0.45 19.58 7.82 87.66 0.69 20.26 16 18 O -0.62 -33.78 15.78 -3.07 -0.05 -33.82 16 19 N -0.59 -27.10 5.09 -306.98 -1.56 -28.67 16 20 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 21 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 23 N -0.94 -56.32 13.96 21.66 0.30 -56.01 16 24 Si 0.97 37.94 27.74 68.60 1.90 39.84 16 25 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 26 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 27 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 28 C 0.14 3.04 3.41 45.34 0.15 3.19 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 C -0.14 -3.99 8.30 71.98 0.60 -3.40 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.26 8.08 -2.39 -0.02 0.24 16 33 H 0.05 0.28 7.87 -2.39 -0.02 0.26 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.59 7.87 -2.39 -0.02 0.57 16 37 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 39 H 0.11 1.00 7.84 -2.39 -0.02 0.98 16 40 H 0.11 1.26 7.82 -2.39 -0.02 1.24 16 41 H 0.10 0.70 7.47 -2.39 -0.02 0.68 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.34 10.67 6.41 -89.69 -0.57 10.09 16 46 H 0.12 2.64 8.08 -2.39 -0.02 2.62 16 47 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 48 H 0.39 14.56 5.76 -92.71 -0.53 14.03 16 49 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 50 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 51 H 0.06 1.69 6.72 -2.39 -0.02 1.67 16 52 H 0.05 1.47 6.53 -2.39 -0.02 1.45 16 Total: -1.00 -83.66 414.48 1.03 -82.63 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -0.25 Total: 40.34 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 7.14 Total: 15.81 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -6.20 Total: -119.65 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -1.57 Total: -58.98 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.84 kcal Total: -83.66 1.03 -82.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178532922.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.647 kcal (2) G-P(sol) polarization free energy of solvation -83.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds