Wall clock time and date at job start Wed Apr 1 2020 01:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00094 * 2 1 4 4 H 1.08996 * 109.47366 * 329.99938 * 3 2 1 5 5 C 1.53001 * 109.46998 * 90.00077 * 3 2 1 6 6 C 1.53001 * 109.47099 * 209.99822 * 3 2 1 7 7 C 1.53004 * 109.47070 * 65.00065 * 6 3 2 8 8 C 1.50698 * 109.46834 * 180.02562 * 7 6 3 9 9 O 1.21278 * 120.00334 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99363 * 180.02562 * 8 7 6 11 11 C 1.47415 * 125.65408 * 359.68469 * 10 8 7 12 12 C 1.54688 * 104.94496 * 204.07578 * 11 10 8 13 13 C 1.55155 * 101.67741 * 323.27562 * 12 11 10 14 14 H 1.08999 * 110.87368 * 276.89949 * 13 12 11 15 15 N 1.46896 * 110.72043 * 153.69621 * 13 12 11 16 16 C 1.46905 * 111.00148 * 85.11958 * 15 13 12 17 17 C 1.50693 * 109.47379 * 180.02562 * 16 15 13 18 18 O 1.21297 * 120.00226 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00153 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00311 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00174 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00406 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99794 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00455 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46992 * 90.00087 * 24 22 20 26 26 H 1.48504 * 109.47579 * 210.00054 * 24 22 20 27 27 H 1.48498 * 109.47005 * 330.00196 * 24 22 20 28 28 C 1.47026 * 125.64562 * 179.97438 * 10 8 7 29 29 H 1.09006 * 109.88096 * 298.32193 * 28 10 8 30 30 C 1.53003 * 109.88500 * 59.32727 * 28 10 8 31 31 H 1.08999 * 109.47099 * 300.00075 * 1 2 3 32 32 H 1.08999 * 109.46886 * 59.99669 * 1 2 3 33 33 H 1.08992 * 109.47597 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47176 * 59.99744 * 5 3 2 35 35 H 1.09001 * 109.47236 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.47217 * 299.99507 * 5 3 2 37 37 H 1.08994 * 109.47218 * 185.00361 * 6 3 2 38 38 H 1.09003 * 109.47196 * 305.00328 * 6 3 2 39 39 H 1.09002 * 109.46571 * 299.99961 * 7 6 3 40 40 H 1.08994 * 109.47011 * 60.00166 * 7 6 3 41 41 H 1.09005 * 110.36916 * 323.00742 * 11 10 8 42 42 H 1.09005 * 110.36893 * 85.32674 * 11 10 8 43 43 H 1.09002 * 111.10507 * 205.10486 * 12 11 10 44 44 H 1.09002 * 110.85109 * 81.33711 * 12 11 10 45 45 H 1.00901 * 111.00361 * 209.07663 * 15 13 12 46 46 H 1.09001 * 109.47065 * 300.00359 * 16 15 13 47 47 H 1.08995 * 109.46727 * 59.99884 * 16 15 13 48 48 H 0.97001 * 119.99770 * 359.97438 * 19 17 16 49 49 H 0.97005 * 120.00139 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.46629 * 66.07074 * 30 28 10 51 51 H 1.08997 * 109.47388 * 186.07171 * 30 28 10 52 52 H 1.09006 * 109.46876 * 306.07714 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3590 1.2632 -0.7212 7 6 3.1384 0.9184 -2.1955 8 6 4.4668 0.8762 -2.9056 9 8 5.4893 1.1003 -2.2932 10 7 4.5185 0.5903 -4.2218 11 6 3.3593 0.2937 -5.0828 12 6 3.9341 -0.5387 -6.2530 13 6 5.3153 0.1344 -6.4685 14 1 5.2211 1.0231 -7.0925 15 7 6.2693 -0.8140 -7.0587 16 6 6.1431 -0.8458 -8.5219 17 6 7.1347 -1.8278 -9.0905 18 8 7.8742 -2.4407 -8.3497 19 7 7.2006 -2.0245 -10.4222 20 6 8.1030 -2.9175 -10.9395 21 1 8.7615 -3.4633 -10.2799 22 6 8.1706 -3.1206 -12.3123 23 7 7.3691 -2.4570 -13.1149 24 14 9.4007 -4.3369 -13.0172 25 1 8.7757 -5.6815 -13.0996 26 1 9.8093 -3.8969 -14.3755 27 1 10.5950 -4.3993 -12.1370 28 6 5.7410 0.5167 -5.0352 29 1 6.2402 1.4857 -5.0426 30 6 6.6810 -0.5483 -4.4668 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.8829 1.0774 1.9563 35 1 2.6606 2.7673 1.4426 36 1 1.2569 1.8015 1.9564 37 1 3.8428 2.2369 -0.6443 38 1 3.9931 0.5050 -0.2617 39 1 2.6545 -0.0554 -2.2723 40 1 2.5043 1.6765 -2.6550 41 1 2.6169 -0.2854 -4.5335 42 1 2.9191 1.2177 -5.4579 43 1 3.3116 -0.4469 -7.1430 44 1 4.0494 -1.5839 -5.9657 45 1 7.2147 -0.5955 -6.7819 46 1 5.1327 -1.1520 -8.7929 47 1 6.3423 0.1470 -8.9254 48 1 6.6095 -1.5341 -11.0146 49 1 7.4165 -2.5985 -14.0734 50 1 6.2250 -1.5320 -4.5780 51 1 7.6274 -0.5233 -5.0070 52 1 6.8602 -0.3482 -3.4104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178532923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:41 Heat of formation + Delta-G solvation = -120.050954 kcal Electronic energy + Delta-G solvation = -29836.914285 eV Core-core repulsion = 25643.320315 eV Total energy + Delta-G solvation = -4193.593970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51942 -38.95552 -38.38378 -37.70288 -34.76368 -34.08850 -33.79132 -31.56722 -31.20096 -30.96865 -29.94000 -27.12919 -26.70737 -25.40792 -24.87308 -23.74756 -22.87732 -21.43653 -19.96539 -19.32784 -19.03746 -17.91653 -17.44463 -17.18420 -16.31597 -16.18466 -15.87953 -15.42784 -15.38724 -15.27509 -15.01022 -14.51718 -14.16147 -13.83673 -13.76517 -13.64391 -13.57208 -13.13795 -13.08120 -12.90517 -12.65941 -12.37953 -12.32226 -12.15130 -11.95046 -11.87240 -11.73091 -11.58750 -11.53079 -11.41193 -11.35534 -11.08368 -10.98849 -10.87558 -10.64076 -10.39634 -10.22251 -10.06277 -9.80050 -9.51441 -8.79060 -8.47537 -8.11822 -7.96751 -6.42413 -3.83162 2.52798 2.77178 3.17792 3.26525 3.32500 3.37604 3.90005 4.06333 4.13395 4.29546 4.38819 4.48449 4.50255 4.65305 4.81226 4.86404 4.92335 4.95068 5.00610 5.00977 5.11025 5.13105 5.21528 5.22450 5.24049 5.30978 5.31601 5.38116 5.49224 5.51806 5.55550 5.66164 5.69741 5.75206 5.78727 5.86011 5.94301 5.95655 6.08307 6.14898 6.26913 6.32667 6.53983 6.81045 7.17733 7.39262 7.54794 7.59849 8.05594 8.05985 8.60490 9.17402 9.53515 10.04943 10.75269 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.001657 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.427406 B =16890.416049 C =17195.217633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.084 3.916 4 H 0.060 0.940 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.134 4.134 8 C 0.529 3.471 9 O -0.540 6.540 10 N -0.613 5.613 11 C 0.099 3.901 12 C -0.123 4.123 13 C 0.077 3.923 14 H 0.057 0.943 15 N -0.654 5.654 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.582 6.582 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.137 3.863 29 H 0.071 0.929 30 C -0.155 4.155 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.354 0.646 46 H 0.086 0.914 47 H 0.044 0.956 48 H 0.392 0.608 49 H 0.271 0.729 50 H 0.068 0.932 51 H 0.067 0.933 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.984 11.501 21.031 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.078 0.922 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.174 4.174 8 C 0.318 3.682 9 O -0.417 6.417 10 N -0.348 5.348 11 C -0.025 4.025 12 C -0.162 4.162 13 C -0.034 4.034 14 H 0.075 0.925 15 N -0.289 5.289 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.466 6.466 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C 0.033 3.967 29 H 0.090 0.910 30 C -0.213 4.213 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.176 0.824 46 H 0.104 0.896 47 H 0.062 0.938 48 H 0.225 0.775 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.086 0.914 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.216 10.517 21.822 29.151 hybrid contribution 0.210 0.798 -1.275 1.519 sum -16.006 11.315 20.547 28.398 Atomic orbital electron populations 1.22781 0.81277 1.02783 0.99810 1.87959 1.19435 1.27809 1.95067 1.22202 0.94843 0.84636 0.95713 0.92151 1.22268 1.02308 1.01908 0.96737 1.21471 0.95628 1.03818 0.92960 1.21621 0.95090 1.04483 0.96166 1.20359 0.91573 0.76125 0.80123 1.90693 1.36436 1.49514 1.65058 1.48565 1.08397 1.69675 1.08154 1.22333 0.88929 0.99295 0.91899 1.22834 0.95327 1.00711 0.97333 1.22553 0.93770 0.93810 0.93301 0.92498 1.60299 1.09982 1.50764 1.07878 1.21721 1.00434 0.98005 0.88115 1.19783 0.87357 0.87094 0.83161 1.90534 1.45634 1.51839 1.58609 1.41856 1.34752 1.38380 1.05035 1.19708 1.14334 1.17856 0.90998 0.87909 1.25254 0.98247 0.98440 0.95972 1.69613 1.38327 1.41920 1.04474 0.85856 0.80392 0.79985 0.78046 1.20393 1.20952 1.19428 1.21597 0.86077 0.99421 0.89597 0.91049 1.21982 0.99021 0.98935 1.01396 0.94228 0.94051 0.89640 0.91532 0.91446 0.92549 0.89841 0.90088 0.88273 0.89397 0.90396 0.91368 0.89939 0.89178 0.82395 0.89561 0.93806 0.77484 0.91893 0.91257 0.91429 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.25 16 2 O -0.38 -3.16 9.88 -35.23 -0.35 -3.51 16 3 C 0.08 0.57 2.72 -26.73 -0.07 0.50 16 4 H 0.06 0.33 7.79 -51.93 -0.40 -0.08 16 5 C -0.17 -1.07 9.53 37.16 0.35 -0.71 16 6 C -0.10 -0.84 4.21 -26.73 -0.11 -0.95 16 7 C -0.13 -1.09 4.61 -27.88 -0.13 -1.22 16 8 C 0.53 6.21 7.62 -10.99 -0.08 6.13 16 9 O -0.54 -8.25 14.78 5.56 0.08 -8.16 16 10 N -0.61 -6.71 3.08 -163.15 -0.50 -7.21 16 11 C 0.10 0.81 6.68 -2.65 -0.02 0.79 16 12 C -0.12 -1.23 6.63 -24.70 -0.16 -1.40 16 13 C 0.08 0.91 3.11 -65.88 -0.20 0.70 16 14 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 15 N -0.65 -10.07 5.13 -106.06 -0.54 -10.61 16 16 C 0.05 0.84 6.02 -4.98 -0.03 0.81 16 17 C 0.44 10.21 7.82 -10.99 -0.09 10.12 16 18 O -0.58 -15.64 15.78 5.54 0.09 -15.55 16 19 N -0.56 -14.10 5.29 -10.97 -0.06 -14.16 16 20 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 24 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 28 C 0.14 1.67 3.41 -66.95 -0.23 1.44 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 C -0.16 -2.15 8.30 37.16 0.31 -1.84 16 31 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 32 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 37 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.10 0.78 7.52 -51.93 -0.39 0.39 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.52 7.48 -51.93 -0.39 0.13 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.35 5.78 6.41 -39.29 -0.25 5.52 16 46 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 47 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 48 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 49 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 50 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 51 H 0.07 0.94 6.72 -51.93 -0.35 0.59 16 52 H 0.06 0.98 6.52 -51.93 -0.34 0.64 16 LS Contribution 417.62 15.07 6.29 6.29 Total: -1.00 -33.27 417.62 -7.99 -41.26 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -9.09 Total: 11.61 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 0.39 Total: 7.67 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.38 Total: -55.59 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.18 Total: -27.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.27 -7.99 -41.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178532923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.792 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds