Wall clock time and date at job start Wed Apr 1 2020 01:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00094 * 2 1 4 4 H 1.08996 * 109.47366 * 329.99938 * 3 2 1 5 5 C 1.53001 * 109.46998 * 90.00077 * 3 2 1 6 6 C 1.53001 * 109.47099 * 209.99822 * 3 2 1 7 7 C 1.53004 * 109.47070 * 65.00065 * 6 3 2 8 8 C 1.50698 * 109.46834 * 180.02562 * 7 6 3 9 9 O 1.21278 * 120.00334 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99363 * 180.02562 * 8 7 6 11 11 C 1.47415 * 125.65408 * 359.68469 * 10 8 7 12 12 C 1.54688 * 104.94496 * 204.07578 * 11 10 8 13 13 C 1.55155 * 101.67741 * 323.27562 * 12 11 10 14 14 H 1.08999 * 110.87368 * 276.89949 * 13 12 11 15 15 N 1.46896 * 110.72043 * 153.69621 * 13 12 11 16 16 C 1.46905 * 111.00148 * 85.11958 * 15 13 12 17 17 C 1.50693 * 109.47379 * 180.02562 * 16 15 13 18 18 O 1.21297 * 120.00226 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00153 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00311 * 179.97438 * 19 17 16 21 21 H 1.08004 * 120.00174 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00406 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99794 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00455 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46992 * 90.00087 * 24 22 20 26 26 H 1.48504 * 109.47579 * 210.00054 * 24 22 20 27 27 H 1.48498 * 109.47005 * 330.00196 * 24 22 20 28 28 C 1.47026 * 125.64562 * 179.97438 * 10 8 7 29 29 H 1.09006 * 109.88096 * 298.32193 * 28 10 8 30 30 C 1.53003 * 109.88500 * 59.32727 * 28 10 8 31 31 H 1.08999 * 109.47099 * 300.00075 * 1 2 3 32 32 H 1.08999 * 109.46886 * 59.99669 * 1 2 3 33 33 H 1.08992 * 109.47597 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47176 * 59.99744 * 5 3 2 35 35 H 1.09001 * 109.47236 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.47217 * 299.99507 * 5 3 2 37 37 H 1.08994 * 109.47218 * 185.00361 * 6 3 2 38 38 H 1.09003 * 109.47196 * 305.00328 * 6 3 2 39 39 H 1.09002 * 109.46571 * 299.99961 * 7 6 3 40 40 H 1.08994 * 109.47011 * 60.00166 * 7 6 3 41 41 H 1.09005 * 110.36916 * 323.00742 * 11 10 8 42 42 H 1.09005 * 110.36893 * 85.32674 * 11 10 8 43 43 H 1.09002 * 111.10507 * 205.10486 * 12 11 10 44 44 H 1.09002 * 110.85109 * 81.33711 * 12 11 10 45 45 H 1.00901 * 111.00361 * 209.07663 * 15 13 12 46 46 H 1.09001 * 109.47065 * 300.00359 * 16 15 13 47 47 H 1.08995 * 109.46727 * 59.99884 * 16 15 13 48 48 H 0.97001 * 119.99770 * 359.97438 * 19 17 16 49 49 H 0.97005 * 120.00139 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.46629 * 66.07074 * 30 28 10 51 51 H 1.08997 * 109.47388 * 186.07171 * 30 28 10 52 52 H 1.09006 * 109.46876 * 306.07714 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3590 1.2632 -0.7212 7 6 3.1384 0.9184 -2.1955 8 6 4.4668 0.8762 -2.9056 9 8 5.4893 1.1003 -2.2932 10 7 4.5185 0.5903 -4.2218 11 6 3.3593 0.2937 -5.0828 12 6 3.9341 -0.5387 -6.2530 13 6 5.3153 0.1344 -6.4685 14 1 5.2211 1.0231 -7.0925 15 7 6.2693 -0.8140 -7.0587 16 6 6.1431 -0.8458 -8.5219 17 6 7.1347 -1.8278 -9.0905 18 8 7.8742 -2.4407 -8.3497 19 7 7.2006 -2.0245 -10.4222 20 6 8.1030 -2.9175 -10.9395 21 1 8.7615 -3.4633 -10.2799 22 6 8.1706 -3.1206 -12.3123 23 7 7.3691 -2.4570 -13.1149 24 14 9.4007 -4.3369 -13.0172 25 1 8.7757 -5.6815 -13.0996 26 1 9.8093 -3.8969 -14.3755 27 1 10.5950 -4.3993 -12.1370 28 6 5.7410 0.5167 -5.0352 29 1 6.2402 1.4857 -5.0426 30 6 6.6810 -0.5483 -4.4668 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.8829 1.0774 1.9563 35 1 2.6606 2.7673 1.4426 36 1 1.2569 1.8015 1.9564 37 1 3.8428 2.2369 -0.6443 38 1 3.9931 0.5050 -0.2617 39 1 2.6545 -0.0554 -2.2723 40 1 2.5043 1.6765 -2.6550 41 1 2.6169 -0.2854 -4.5335 42 1 2.9191 1.2177 -5.4579 43 1 3.3116 -0.4469 -7.1430 44 1 4.0494 -1.5839 -5.9657 45 1 7.2147 -0.5955 -6.7819 46 1 5.1327 -1.1520 -8.7929 47 1 6.3423 0.1470 -8.9254 48 1 6.6095 -1.5341 -11.0146 49 1 7.4165 -2.5985 -14.0734 50 1 6.2250 -1.5320 -4.5780 51 1 7.6274 -0.5233 -5.0070 52 1 6.8602 -0.3482 -3.4104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178532923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:39 Heat of formation + Delta-G solvation = -144.079104 kcal Electronic energy + Delta-G solvation = -29837.956223 eV Core-core repulsion = 25643.320315 eV Total energy + Delta-G solvation = -4194.635908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42572 -40.16077 -39.45712 -38.78197 -36.18807 -35.54515 -34.70991 -33.26970 -32.44284 -31.85117 -30.72604 -28.22653 -27.51677 -26.55325 -25.93731 -25.07473 -23.66347 -22.01246 -21.11999 -20.85532 -19.99084 -19.87580 -18.26208 -17.83431 -17.70336 -17.17779 -16.92057 -16.65007 -16.37872 -16.14071 -15.90765 -15.85319 -15.64313 -15.31299 -14.69457 -14.63331 -14.39418 -14.22294 -13.98900 -13.84381 -13.48577 -13.41428 -13.40232 -13.31861 -13.12331 -13.07416 -12.88644 -12.68198 -12.46679 -12.41182 -12.33114 -12.19519 -12.12267 -12.05190 -11.82454 -11.62086 -11.51836 -11.49709 -10.81196 -10.49601 -10.32505 -10.00052 -9.67764 -9.34057 -8.45949 -5.94258 1.38363 1.42373 1.54627 1.64822 1.92570 2.07312 2.30176 2.91177 2.93498 3.21681 3.31591 3.52815 3.69248 3.72958 3.82894 4.04905 4.11775 4.20541 4.27173 4.31760 4.33235 4.36815 4.45898 4.50891 4.53139 4.55729 4.61106 4.64204 4.66197 4.66569 4.71417 4.79569 4.83002 4.93538 4.99586 5.02530 5.06323 5.07482 5.22357 5.27656 5.31941 5.34495 5.42025 5.43515 5.90382 6.11844 6.33279 6.36079 6.56269 6.61735 7.14139 7.17842 7.58050 8.13892 8.71276 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.001657 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.427406 B =16890.416049 C =17195.217633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.087 3.913 4 H 0.083 0.917 5 C -0.175 4.175 6 C -0.099 4.099 7 C -0.122 4.122 8 C 0.521 3.479 9 O -0.585 6.585 10 N -0.614 5.614 11 C 0.101 3.899 12 C -0.121 4.121 13 C 0.080 3.920 14 H 0.078 0.922 15 N -0.669 5.669 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.918 5.918 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.137 3.863 29 H 0.068 0.932 30 C -0.145 4.145 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.068 0.932 45 H 0.345 0.655 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.054 0.946 51 H 0.060 0.940 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.655 12.743 20.305 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.029 3.971 4 H 0.101 0.899 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.162 4.162 8 C 0.312 3.688 9 O -0.466 6.466 10 N -0.348 5.348 11 C -0.021 4.021 12 C -0.160 4.160 13 C -0.030 4.030 14 H 0.096 0.904 15 N -0.304 5.304 16 C -0.066 4.066 17 C 0.225 3.775 18 O -0.511 6.511 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.200 1.200 28 C 0.033 3.967 29 H 0.087 0.913 30 C -0.203 4.203 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.087 0.913 45 H 0.166 0.834 46 H 0.128 0.872 47 H 0.087 0.913 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.073 0.927 51 H 0.079 0.921 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.951 11.773 21.076 30.691 hybrid contribution 1.042 0.408 -0.992 1.495 sum -17.909 12.181 20.084 29.537 Atomic orbital electron populations 1.22942 0.79864 1.03476 1.00902 1.87929 1.21094 1.28600 1.95228 1.22200 0.94177 0.84736 0.95957 0.89919 1.22270 1.02541 1.01957 0.96449 1.21422 0.96260 1.02680 0.93338 1.21620 0.93224 1.05817 0.95528 1.21075 0.92368 0.75191 0.80184 1.90674 1.38247 1.51598 1.66050 1.48666 1.08810 1.69050 1.08225 1.22553 0.88059 1.00627 0.90866 1.22846 0.94458 0.99621 0.99034 1.22630 0.93689 0.94050 0.92640 0.90417 1.60306 1.10235 1.52731 1.07083 1.21572 0.99189 0.97040 0.88761 1.20925 0.87353 0.86971 0.82288 1.90506 1.47542 1.53617 1.59466 1.41910 1.34725 1.38415 1.05934 1.19649 1.15687 1.19548 0.91538 0.90511 1.25986 0.99668 0.99726 0.95702 1.69664 1.38937 1.42437 1.04899 0.84958 0.77975 0.78040 0.77541 1.19692 1.19491 1.19990 1.21493 0.86581 0.98388 0.90241 0.91349 1.21840 0.99267 0.98896 1.00330 0.93471 0.92578 0.89273 0.93068 0.90561 0.91588 0.90108 0.92960 0.87604 0.86244 0.88332 0.88476 0.87745 0.91289 0.83427 0.87227 0.91314 0.76880 0.91312 0.92717 0.92143 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.43 16 2 O -0.41 -6.12 9.88 -148.98 -1.47 -7.60 16 3 C 0.09 1.04 2.72 30.59 0.08 1.12 16 4 H 0.08 0.63 7.79 -2.39 -0.02 0.61 16 5 C -0.17 -1.95 9.53 71.98 0.69 -1.27 16 6 C -0.10 -1.58 4.21 30.60 0.13 -1.46 16 7 C -0.12 -1.75 4.61 29.85 0.14 -1.61 16 8 C 0.52 11.81 7.62 87.66 0.67 12.48 16 9 O -0.59 -18.39 14.78 -3.02 -0.04 -18.43 16 10 N -0.61 -12.41 3.08 -788.49 -2.43 -14.84 16 11 C 0.10 1.28 6.68 86.78 0.58 1.86 16 12 C -0.12 -2.06 6.63 31.91 0.21 -1.85 16 13 C 0.08 1.72 3.11 46.10 0.14 1.87 16 14 H 0.08 1.42 7.92 -2.39 -0.02 1.40 16 15 N -0.67 -20.05 5.13 -489.47 -2.51 -22.56 16 16 C 0.07 2.13 6.02 85.55 0.52 2.64 16 17 C 0.44 20.38 7.82 87.66 0.69 21.06 16 18 O -0.62 -34.56 15.78 -3.08 -0.05 -34.60 16 19 N -0.57 -28.90 5.29 -306.99 -1.62 -30.52 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 23 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 24 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 C 0.14 3.26 3.41 45.34 0.15 3.42 16 29 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 30 C -0.14 -4.20 8.30 71.98 0.60 -3.60 16 31 H 0.05 0.32 7.87 -2.39 -0.02 0.30 16 32 H 0.06 0.31 8.08 -2.39 -0.02 0.29 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.60 7.87 -2.39 -0.02 0.58 16 37 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.11 1.42 7.52 -2.39 -0.02 1.40 16 40 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 0.90 7.48 -2.38 -0.02 0.88 16 42 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.34 11.38 6.41 -89.69 -0.57 10.81 16 46 H 0.11 3.04 8.08 -2.39 -0.02 3.02 16 47 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 48 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 49 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 50 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 51 H 0.06 1.79 6.72 -2.39 -0.02 1.77 16 52 H 0.05 1.55 6.52 -2.38 -0.02 1.53 16 Total: -1.00 -75.09 417.62 0.89 -74.21 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -0.39 Total: 40.23 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 7.10 Total: 17.85 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -6.28 Total: -116.58 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -1.57 Total: -60.63 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -75.09 0.89 -74.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178532923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.872 kcal (2) G-P(sol) polarization free energy of solvation -75.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds