Wall clock time and date at job start Wed Apr 1 2020 01:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99851 * 2 1 4 4 C 1.52999 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46716 * 55.00437 * 4 3 2 6 6 C 1.52997 * 109.47317 * 295.00528 * 4 3 2 7 7 C 1.52992 * 109.46961 * 175.00066 * 4 3 2 8 8 C 1.50707 * 109.46966 * 185.00310 * 7 4 3 9 9 O 1.21279 * 119.99998 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99809 * 180.02562 * 8 7 4 11 11 C 1.47422 * 125.64951 * 359.69256 * 10 8 7 12 12 C 1.54696 * 104.94186 * 204.07372 * 11 10 8 13 13 C 1.55156 * 101.67343 * 323.27836 * 12 11 10 14 14 H 1.09001 * 110.71868 * 276.96817 * 13 12 11 15 15 N 1.46905 * 110.71717 * 153.69984 * 13 12 11 16 16 C 1.46900 * 111.00122 * 91.47609 * 15 13 12 17 17 C 1.50697 * 109.47096 * 179.97438 * 16 15 13 18 18 O 1.21284 * 120.00328 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00010 * 180.02562 * 17 16 15 20 20 C 1.37087 * 120.00139 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00454 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00116 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00242 * 180.02562 * 22 20 19 24 24 Si 1.86792 * 120.00024 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46843 * 90.00447 * 24 22 20 26 26 H 1.48495 * 109.47546 * 210.00248 * 24 22 20 27 27 H 1.48496 * 109.47581 * 330.00647 * 24 22 20 28 28 C 1.47019 * 125.64691 * 180.02562 * 10 8 7 29 29 H 1.09007 * 109.88089 * 298.47090 * 28 10 8 30 30 C 1.53000 * 109.88536 * 59.48403 * 28 10 8 31 31 H 1.09004 * 109.46882 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47392 * 299.99675 * 1 2 3 33 33 H 1.08996 * 109.47221 * 60.00002 * 1 2 3 34 34 H 1.09006 * 109.46763 * 59.99684 * 3 2 1 35 35 H 1.08997 * 109.47320 * 300.00734 * 3 2 1 36 36 H 1.09002 * 109.47153 * 299.99641 * 6 4 3 37 37 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 38 38 H 1.09004 * 109.47261 * 59.99813 * 6 4 3 39 39 H 1.08996 * 109.47729 * 305.00119 * 7 4 3 40 40 H 1.09001 * 109.47563 * 65.00698 * 7 4 3 41 41 H 1.08995 * 110.36768 * 323.00267 * 11 10 8 42 42 H 1.09000 * 110.36942 * 85.32648 * 11 10 8 43 43 H 1.08995 * 111.10221 * 205.10946 * 12 11 10 44 44 H 1.08996 * 110.81307 * 81.31995 * 12 11 10 45 45 H 1.00894 * 111.00075 * 327.51856 * 15 13 12 46 46 H 1.08994 * 109.47125 * 300.00082 * 16 15 13 47 47 H 1.09006 * 109.46934 * 59.99906 * 16 15 13 48 48 H 0.97004 * 120.00011 * 359.97438 * 19 17 16 49 49 H 0.96989 * 120.00491 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.47035 * 58.54894 * 30 28 10 51 51 H 1.09005 * 109.47182 * 178.55306 * 30 28 10 52 52 H 1.09004 * 109.46614 * 298.54821 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9952 0.5370 1.3082 7 6 4.1572 2.5770 -0.1251 8 6 5.6538 2.4496 -0.2480 9 8 6.1720 1.3531 -0.2367 10 7 6.4164 3.5541 -0.3705 11 6 5.9196 4.9417 -0.4050 12 6 7.0154 5.7392 -1.1509 13 6 8.3082 5.0505 -0.6391 14 1 8.6067 5.4594 0.3261 15 7 9.3928 5.1863 -1.6206 16 6 10.1931 6.3898 -1.3577 17 6 11.2936 6.4948 -2.3819 18 8 11.4010 5.6500 -3.2455 19 7 12.1591 7.5270 -2.3375 20 6 13.1606 7.6223 -3.2688 21 1 13.2563 6.8700 -4.0378 22 6 14.0532 8.6861 -3.2228 23 7 15.0130 8.7778 -4.1159 24 14 13.8883 9.9869 -1.8924 25 1 14.6890 9.5871 -0.7073 26 1 14.3836 11.2883 -2.4082 27 1 12.4612 10.1193 -1.5037 28 6 7.8808 3.5743 -0.4988 29 1 8.3368 3.1370 0.3895 30 6 8.3053 2.7891 -1.7415 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6885 1.8464 0.8900 35 1 1.6885 1.8465 -0.8899 36 1 3.6793 1.1534 2.1499 37 1 5.0818 0.4506 1.3084 38 1 3.5522 -0.4549 1.3977 39 1 3.7609 3.0734 -1.0108 40 1 3.9142 3.1648 0.7601 41 1 4.9761 4.9934 -0.9483 42 1 5.7969 5.3260 0.6076 43 1 6.9955 6.7917 -0.8686 44 1 6.9120 5.6236 -2.2297 45 1 9.0299 5.1918 -2.5620 46 1 9.5546 7.2710 -1.4183 47 1 10.6297 6.3252 -0.3610 48 1 12.0734 8.2025 -1.6466 49 1 15.6358 9.5205 -4.0840 50 1 7.8398 3.2269 -2.6244 51 1 9.3897 2.8300 -1.8443 52 1 7.9888 1.7509 -1.6408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179821772.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:10 Heat of formation + Delta-G solvation = -111.493302 kcal Electronic energy + Delta-G solvation = -29918.324043 eV Core-core repulsion = 25725.101161 eV Total energy + Delta-G solvation = -4193.222882 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65893 -38.97727 -38.41749 -37.85756 -35.00840 -34.82740 -33.88221 -31.71996 -31.36430 -30.89866 -28.33982 -27.58511 -26.78235 -25.80722 -25.21915 -23.70293 -23.15163 -21.27506 -20.10504 -19.44255 -19.02332 -18.45747 -17.59039 -16.77633 -16.47828 -16.31410 -16.05097 -15.71065 -15.55811 -15.17192 -14.96953 -14.83000 -14.23675 -13.98447 -13.74620 -13.59547 -13.41093 -13.22879 -13.04260 -12.83818 -12.62275 -12.57583 -12.45622 -12.36272 -12.25165 -12.00542 -11.92768 -11.68274 -11.50563 -11.37019 -11.25335 -11.18399 -11.02947 -10.90536 -10.83506 -10.62173 -10.08495 -9.99848 -9.79249 -9.59790 -8.81787 -8.63151 -8.22580 -8.17631 -6.33098 -3.84733 2.46556 2.65719 2.99344 3.04647 3.12964 3.37631 3.70656 3.95014 4.07942 4.15682 4.27260 4.46486 4.50040 4.62298 4.70511 4.79480 4.86928 4.87773 4.92323 4.98712 4.99346 5.00742 5.07390 5.11381 5.19310 5.23282 5.25396 5.39553 5.44871 5.49630 5.51830 5.59482 5.62511 5.73456 5.74593 5.84956 5.86550 5.91070 6.00035 6.13223 6.22395 6.39920 6.58984 6.74180 7.01513 7.34533 7.46847 7.55727 8.02266 8.12275 8.57190 8.92870 9.40006 9.79851 10.80015 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036177 B = 0.001675 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.779043 B =16713.742037 C =16983.334221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.066 3.934 4 C -0.075 4.075 5 H 0.088 0.912 6 C -0.149 4.149 7 C -0.132 4.132 8 C 0.531 3.469 9 O -0.529 6.529 10 N -0.617 5.617 11 C 0.102 3.898 12 C -0.167 4.167 13 C 0.082 3.918 14 H 0.093 0.907 15 N -0.653 5.653 16 C 0.048 3.952 17 C 0.449 3.551 18 O -0.564 6.564 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.144 3.856 29 H 0.077 0.923 30 C -0.152 4.152 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.356 0.644 46 H 0.046 0.954 47 H 0.088 0.912 48 H 0.370 0.630 49 H 0.273 0.727 50 H 0.047 0.953 51 H 0.087 0.913 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.896 -6.969 12.954 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.011 4.011 4 C -0.094 4.094 5 H 0.106 0.894 6 C -0.206 4.206 7 C -0.172 4.172 8 C 0.319 3.681 9 O -0.405 6.405 10 N -0.353 5.353 11 C -0.021 4.021 12 C -0.207 4.207 13 C -0.030 4.030 14 H 0.111 0.889 15 N -0.285 5.285 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.445 6.445 19 N -0.229 5.229 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C 0.041 3.959 29 H 0.095 0.905 30 C -0.210 4.210 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.177 0.823 46 H 0.064 0.936 47 H 0.106 0.894 48 H 0.203 0.797 49 H 0.084 0.916 50 H 0.066 0.934 51 H 0.105 0.895 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -27.830 -8.676 12.613 31.763 hybrid contribution -0.906 2.412 0.694 2.668 sum -28.735 -6.264 13.307 32.281 Atomic orbital electron populations 1.22742 0.81087 1.02818 0.99887 1.87899 1.19540 1.27818 1.95368 1.22594 0.93742 0.84754 1.00009 1.20829 0.91970 0.95258 1.01329 0.89370 1.21884 1.03205 1.00593 0.94885 1.21628 0.92314 0.99061 1.04151 1.20131 0.88709 0.83012 0.76201 1.90691 1.74678 1.25455 1.49701 1.48669 1.07821 1.05959 1.72833 1.22204 0.97831 0.81635 1.00465 1.23546 0.95918 1.00047 1.01195 1.22616 0.89326 0.93935 0.97084 0.88888 1.60026 1.22645 1.39101 1.06734 1.21752 0.95303 0.91499 0.99941 1.19682 0.84968 0.83915 0.87975 1.90575 1.74385 1.40968 1.38602 1.42198 1.28512 1.23133 1.29103 1.19434 1.04543 1.10720 1.08749 0.86270 1.25041 0.95919 0.97727 0.97439 1.69619 1.16332 1.31748 1.34362 0.86666 0.78365 0.82102 0.82183 1.19595 1.20210 1.19579 1.21504 0.78789 0.95749 0.99840 0.90491 1.21935 1.03567 0.99739 0.95720 0.89594 0.94136 0.94113 0.93276 0.93341 0.93667 0.90548 0.92136 0.88935 0.88882 0.90667 0.91163 0.89665 0.90117 0.82291 0.93638 0.89359 0.79715 0.91597 0.93351 0.89461 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.43 10.24 -35.23 -0.36 -3.79 16 3 C 0.07 0.46 5.32 37.16 0.20 0.66 16 4 C -0.07 -0.63 2.27 -90.63 -0.21 -0.84 16 5 H 0.09 0.93 7.95 -51.93 -0.41 0.52 16 6 C -0.15 -1.39 8.83 37.16 0.33 -1.06 16 7 C -0.13 -0.93 4.19 -27.88 -0.12 -1.05 16 8 C 0.53 5.69 7.35 -10.98 -0.08 5.61 16 9 O -0.53 -7.61 12.86 5.56 0.07 -7.54 16 10 N -0.62 -6.02 3.08 -163.15 -0.50 -6.52 16 11 C 0.10 0.68 6.68 -2.65 -0.02 0.66 16 12 C -0.17 -1.31 6.65 -24.70 -0.16 -1.47 16 13 C 0.08 0.85 3.15 -65.88 -0.21 0.64 16 14 H 0.09 0.87 7.83 -51.93 -0.41 0.46 16 15 N -0.65 -9.09 4.41 -106.06 -0.47 -9.56 16 16 C 0.05 0.72 6.03 -4.98 -0.03 0.69 16 17 C 0.45 9.77 7.82 -10.99 -0.09 9.68 16 18 O -0.56 -14.71 15.78 5.55 0.09 -14.62 16 19 N -0.59 -13.64 5.09 -10.97 -0.06 -13.69 16 20 C -0.31 -8.52 10.16 -14.94 -0.15 -8.68 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 23 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 24 Si 0.88 18.99 27.74 -169.99 -4.71 14.27 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 28 C 0.14 1.66 3.48 -66.96 -0.23 1.42 16 29 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 30 C -0.15 -2.03 8.26 37.16 0.31 -1.73 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.88 5.95 -51.93 -0.31 0.57 16 38 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 39 H 0.09 0.50 7.84 -51.93 -0.41 0.09 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.37 7.48 -51.93 -0.39 -0.01 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.70 7.77 -51.93 -0.40 0.29 16 45 H 0.36 5.26 7.43 -39.30 -0.29 4.97 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 48 H 0.37 7.45 5.76 -40.82 -0.24 7.22 16 49 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 50 H 0.05 0.64 7.95 -51.93 -0.41 0.22 16 51 H 0.09 1.32 7.44 -51.93 -0.39 0.93 16 52 H 0.06 0.89 6.74 -51.93 -0.35 0.54 16 LS Contribution 411.90 15.07 6.21 6.21 Total: -1.00 -34.35 411.90 -7.44 -41.79 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -9.04 Total: 11.32 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 0.56 Total: 6.85 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.25 Total: -54.50 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.20 Total: -25.95 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.35 -7.44 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179821772.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.699 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds